{
  "version": 1,
  "complete": true,
  "ct": "/home/sean/Documents/volpkgs/s1_ds2.volpkg/volumes/s1_ds2.zarr/2",
  "settings": {
    "threshold": 65,
    "ct_sigma": 1,
    "seed_radius": 3,
    "closing_radius": 12,
    "boundary_sigma": 4
  },
  "include_internal_cavities": true,
  "z_range": [
    0,
    4737
  ],
  "partial": false,
  "mapping": "CT index = floor(target index * scale), zero origin",
  "levels": [
    {
      "source": "/home/sean/Desktop/spiral_dataset/lasagna_inputs/las_008_nx.ome.zarr/4",
      "output": "/tmp/ct_mask_script_test/full_volume/las_008_nx.ome.zarr/4",
      "scale_zyx": [
        "1",
        "1",
        "1"
      ]
    },
    {
      "source": "/home/sean/Desktop/spiral_dataset/lasagna_inputs/las_008_nx.ome.zarr/5",
      "output": "/tmp/ct_mask_script_test/full_volume/las_008_nx.ome.zarr/5",
      "scale_zyx": [
        "2",
        "2",
        "2"
      ]
    },
    {
      "source": "/home/sean/Desktop/spiral_dataset/lasagna_inputs/las_008_ny.ome.zarr/4",
      "output": "/tmp/ct_mask_script_test/full_volume/las_008_ny.ome.zarr/4",
      "scale_zyx": [
        "1",
        "1",
        "1"
      ]
    },
    {
      "source": "/home/sean/Desktop/spiral_dataset/lasagna_inputs/las_008_ny.ome.zarr/5",
      "output": "/tmp/ct_mask_script_test/full_volume/las_008_ny.ome.zarr/5",
      "scale_zyx": [
        "2",
        "2",
        "2"
      ]
    }
  ],
  "workers": 2,
  "mask_workers": 4,
  "batch_depth": 128,
  "batches": [
    {
      "z_range": [
        0,
        128
      ],
      "read_seconds": 0.1627258276566863,
      "mask_seconds": 1.6317262221127748,
      "apply_seconds": 1.1938780825585127,
      "copied": 0,
      "masked": 610,
      "skipped": 36254,
      "boundary_zeroed": 13826034
    },
    {
      "z_range": [
        128,
        256
      ],
      "read_seconds": 0.2368320794776082,
      "mask_seconds": 6.691456226631999,
      "apply_seconds": 1.694069305434823,
      "copied": 2934,
      "masked": 2586,
      "skipped": 31344,
      "boundary_zeroed": 43033260
    },
    {
      "z_range": [
        256,
        384
      ],
      "read_seconds": 0.31506763957440853,
      "mask_seconds": 7.6200256403535604,
      "apply_seconds": 1.9064002726227045,
      "copied": 6510,
      "masked": 2504,
      "skipped": 27850,
      "boundary_zeroed": 40466410
    },
    {
      "z_range": [
        384,
        512
      ],
      "read_seconds": 0.33767593558877707,
      "mask_seconds": 7.915333456359804,
      "apply_seconds": 2.036763275973499,
      "copied": 7720,
      "masked": 2136,
      "skipped": 27008,
      "boundary_zeroed": 35228012
    },
    {
      "z_range": [
        512,
        640
      ],
      "read_seconds": 0.3735063783824444,
      "mask_seconds": 7.933371076360345,
      "apply_seconds": 1.9987694565206766,
      "copied": 7822,
      "masked": 2204,
      "skipped": 26838,
      "boundary_zeroed": 36635662
    },
    {
      "z_range": [
        640,
        768
      ],
      "read_seconds": 0.34169042110443115,
      "mask_seconds": 8.098922401666641,
      "apply_seconds": 2.0799533231183887,
      "copied": 8198,
      "masked": 2248,
      "skipped": 26418,
      "boundary_zeroed": 37407004
    },
    {
      "z_range": [
        768,
        896
      ],
      "read_seconds": 0.3412590380758047,
      "mask_seconds": 8.166052688844502,
      "apply_seconds": 2.047419977374375,
      "copied": 8384,
      "masked": 2148,
      "skipped": 26332,
      "boundary_zeroed": 35597600
    },
    {
      "z_range": [
        896,
        1024
      ],
      "read_seconds": 0.34709661547094584,
      "mask_seconds": 8.077206201851368,
      "apply_seconds": 2.1327668223530054,
      "copied": 8572,
      "masked": 2192,
      "skipped": 26100,
      "boundary_zeroed": 36133930
    },
    {
      "z_range": [
        1024,
        1152
      ],
      "read_seconds": 0.37173423543572426,
      "mask_seconds": 7.790963131003082,
      "apply_seconds": 4.400486917234957,
      "copied": 8830,
      "masked": 2242,
      "skipped": 25792,
      "boundary_zeroed": 37568566
    },
    {
      "z_range": [
        1152,
        1280
      ],
      "read_seconds": 0.4384967312216759,
      "mask_seconds": 7.639955809339881,
      "apply_seconds": 4.346148674376309,
      "copied": 8952,
      "masked": 2150,
      "skipped": 25762,
      "boundary_zeroed": 36320966
    },
    {
      "z_range": [
        1280,
        1408
      ],
      "read_seconds": 0.4818399837240577,
      "mask_seconds": 7.755166734568775,
      "apply_seconds": 3.7770291548222303,
      "copied": 8920,
      "masked": 2290,
      "skipped": 25654,
      "boundary_zeroed": 38064618
    },
    {
      "z_range": [
        1408,
        1536
      ],
      "read_seconds": 0.5608909893780947,
      "mask_seconds": 7.6179613983258605,
      "apply_seconds": 4.525981543585658,
      "copied": 8722,
      "masked": 2102,
      "skipped": 26040,
      "boundary_zeroed": 34873578
    },
    {
      "z_range": [
        1536,
        1664
      ],
      "read_seconds": 0.490528654307127,
      "mask_seconds": 7.544997062534094,
      "apply_seconds": 4.295150022022426,
      "copied": 8524,
      "masked": 1934,
      "skipped": 26406,
      "boundary_zeroed": 31909034
    },
    {
      "z_range": [
        1664,
        1792
      ],
      "read_seconds": 0.44910258054733276,
      "mask_seconds": 7.6199571415781975,
      "apply_seconds": 4.177441947162151,
      "copied": 8382,
      "masked": 1908,
      "skipped": 26574,
      "boundary_zeroed": 31817570
    },
    {
      "z_range": [
        1792,
        1920
      ],
      "read_seconds": 0.47010744735598564,
      "mask_seconds": 7.604580947197974,
      "apply_seconds": 3.988542279228568,
      "copied": 8088,
      "masked": 1856,
      "skipped": 26920,
      "boundary_zeroed": 30994300
    },
    {
      "z_range": [
        1920,
        2048
      ],
      "read_seconds": 0.39456550125032663,
      "mask_seconds": 7.65202674921602,
      "apply_seconds": 3.4880163306370378,
      "copied": 8166,
      "masked": 1812,
      "skipped": 26886,
      "boundary_zeroed": 29053206
    },
    {
      "z_range": [
        2048,
        2176
      ],
      "read_seconds": 0.3188043422996998,
      "mask_seconds": 7.661186382174492,
      "apply_seconds": 2.0125981541350484,
      "copied": 8466,
      "masked": 1836,
      "skipped": 26562,
      "boundary_zeroed": 29899404
    },
    {
      "z_range": [
        2176,
        2304
      ],
      "read_seconds": 0.3877387773245573,
      "mask_seconds": 7.720108711160719,
      "apply_seconds": 4.30408322904259,
      "copied": 8588,
      "masked": 1934,
      "skipped": 26342,
      "boundary_zeroed": 31308344
    },
    {
      "z_range": [
        2304,
        2432
      ],
      "read_seconds": 0.5240753469988704,
      "mask_seconds": 7.829866249114275,
      "apply_seconds": 3.2991083869710565,
      "copied": 8848,
      "masked": 1984,
      "skipped": 26032,
      "boundary_zeroed": 32250542
    },
    {
      "z_range": [
        2432,
        2560
      ],
      "read_seconds": 0.37098218500614166,
      "mask_seconds": 7.91182704269886,
      "apply_seconds": 3.222098839469254,
      "copied": 8794,
      "masked": 2110,
      "skipped": 25960,
      "boundary_zeroed": 34365830
    },
    {
      "z_range": [
        2560,
        2688
      ],
      "read_seconds": 0.4619422238320112,
      "mask_seconds": 8.005494295619428,
      "apply_seconds": 4.413089737296104,
      "copied": 8202,
      "masked": 2156,
      "skipped": 26506,
      "boundary_zeroed": 35924702
    },
    {
      "z_range": [
        2688,
        2816
      ],
      "read_seconds": 0.3399841208010912,
      "mask_seconds": 8.038299221545458,
      "apply_seconds": 3.9529972169548273,
      "copied": 8494,
      "masked": 2040,
      "skipped": 26330,
      "boundary_zeroed": 34201722
    },
    {
      "z_range": [
        2816,
        2944
      ],
      "read_seconds": 0.3740230295807123,
      "mask_seconds": 8.050522468984127,
      "apply_seconds": 3.6990843983367085,
      "copied": 8800,
      "masked": 1994,
      "skipped": 26070,
      "boundary_zeroed": 32869004
    },
    {
      "z_range": [
        2944,
        3072
      ],
      "read_seconds": 0.48562148679047823,
      "mask_seconds": 8.17714961618185,
      "apply_seconds": 4.22169460169971,
      "copied": 9160,
      "masked": 1908,
      "skipped": 25796,
      "boundary_zeroed": 31393606
    },
    {
      "z_range": [
        3072,
        3200
      ],
      "read_seconds": 0.5718427421525121,
      "mask_seconds": 8.05483538005501,
      "apply_seconds": 4.222760614007711,
      "copied": 9424,
      "masked": 1956,
      "skipped": 25484,
      "boundary_zeroed": 33056762
    },
    {
      "z_range": [
        3200,
        3328
      ],
      "read_seconds": 0.49968872778117657,
      "mask_seconds": 8.100066765211523,
      "apply_seconds": 4.622215020470321,
      "copied": 9666,
      "masked": 1972,
      "skipped": 25226,
      "boundary_zeroed": 32717006
    },
    {
      "z_range": [
        3328,
        3456
      ],
      "read_seconds": 0.4559177476912737,
      "mask_seconds": 8.087503650225699,
      "apply_seconds": 3.3276485167443752,
      "copied": 9652,
      "masked": 2004,
      "skipped": 25208,
      "boundary_zeroed": 32789318
    },
    {
      "z_range": [
        3456,
        3584
      ],
      "read_seconds": 0.3585590058937669,
      "mask_seconds": 8.022817674092948,
      "apply_seconds": 4.075259704142809,
      "copied": 9512,
      "masked": 2018,
      "skipped": 25334,
      "boundary_zeroed": 33474380
    },
    {
      "z_range": [
        3584,
        3712
      ],
      "read_seconds": 0.46138325333595276,
      "mask_seconds": 7.851578693836927,
      "apply_seconds": 4.124139807187021,
      "copied": 8828,
      "masked": 2236,
      "skipped": 25800,
      "boundary_zeroed": 36354098
    },
    {
      "z_range": [
        3712,
        3840
      ],
      "read_seconds": 0.42513206135481596,
      "mask_seconds": 7.6980923460796475,
      "apply_seconds": 4.114295895211399,
      "copied": 8468,
      "masked": 2154,
      "skipped": 26242,
      "boundary_zeroed": 35203224
    },
    {
      "z_range": [
        3840,
        3968
      ],
      "read_seconds": 0.5402367450296879,
      "mask_seconds": 7.608434556052089,
      "apply_seconds": 3.4774758433923125,
      "copied": 8404,
      "masked": 2070,
      "skipped": 26390,
      "boundary_zeroed": 34448486
    },
    {
      "z_range": [
        3968,
        4096
      ],
      "read_seconds": 0.35062678903341293,
      "mask_seconds": 7.357122343964875,
      "apply_seconds": 3.750715058296919,
      "copied": 8038,
      "masked": 2042,
      "skipped": 26784,
      "boundary_zeroed": 32002706
    },
    {
      "z_range": [
        4096,
        4224
      ],
      "read_seconds": 0.350589482113719,
      "mask_seconds": 7.2027124566957355,
      "apply_seconds": 3.9728185683488846,
      "copied": 7410,
      "masked": 2138,
      "skipped": 27316,
      "boundary_zeroed": 34529624
    },
    {
      "z_range": [
        4224,
        4352
      ],
      "read_seconds": 0.3117819903418422,
      "mask_seconds": 6.606239055283368,
      "apply_seconds": 3.5820096638053656,
      "copied": 6170,
      "masked": 1970,
      "skipped": 28724,
      "boundary_zeroed": 32363642
    },
    {
      "z_range": [
        4352,
        4480
      ],
      "read_seconds": 0.32568744849413633,
      "mask_seconds": 5.867880484089255,
      "apply_seconds": 2.71274402923882,
      "copied": 4662,
      "masked": 1968,
      "skipped": 30234,
      "boundary_zeroed": 32507446
    },
    {
      "z_range": [
        4480,
        4608
      ],
      "read_seconds": 0.1946030668914318,
      "mask_seconds": 5.0868691662326455,
      "apply_seconds": 1.8653862532228231,
      "copied": 1788,
      "masked": 2062,
      "skipped": 33014,
      "boundary_zeroed": 36275620
    },
    {
      "z_range": [
        4608,
        4736
      ],
      "read_seconds": 0.11612382624298334,
      "mask_seconds": 4.253000539727509,
      "apply_seconds": 1.3373534567654133,
      "copied": 202,
      "masked": 586,
      "skipped": 36076,
      "boundary_zeroed": 11589382
    },
    {
      "z_range": [
        4736,
        4737
      ],
      "read_seconds": 0.010667373426258564,
      "mask_seconds": 0.11754342075437307,
      "apply_seconds": 0.33333730697631836,
      "copied": 0,
      "masked": 8,
      "skipped": 10232,
      "boundary_zeroed": 6890
    }
  ],
  "totals": {
    "copied": 280300,
    "masked": 74068,
    "skipped": 1019840,
    "boundary_zeroed": 1228461488
  },
  "elapsed_seconds": 409.8083632234484
}
