{ "area_vx2": 1597187.5, "base_shape_zyx": [ 18946, 8174, 8174 ], "bbox": [ [ 4015.849365234375, 2945.029541015625, 9261.185546875 ], [ 4595.3564453125, 3620.812744140625, 10657.533203125 ] ], "extra_channels": [ { "dtype": "float32", "file": "flow_gate_local_contrast.tif", "name": "flow_gate_local_contrast", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.local_contrast", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } }, { "dtype": "float32", "file": "flow_gate_component_normalized.tif", "name": "flow_gate_component_normalized", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.component_normalized", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } } ], "fit_config": { "_corr_point_roi_init_": { "effective_seed": [ 17383.490234375, 13060.4814453125, 41954.0078125 ], "final_anchor_h": 233.0, "final_anchor_w": 61.400987923145294, "final_shell_id": "shell_0007.tifxyz", "final_trim_bottom": 21, "final_trim_top": 20, "init_margin_grid_points": 80, "initial_seed": [ 17208.384765625, 13207.412109375, 42149.5234375 ], "initial_shell_id": "shell_0007.tifxyz", "initial_skipped_point_count": 0, "initial_skipped_reasons": {}, "initial_trim_bottom": 21, "initial_trim_top": 20, "initial_usable_point_count": 68, "mode": "corr-point-roi", "model_h": 10560.111236572266, "model_w": 8589.358019828796, "model_w_unit": "voxels", "output_radius_grid_points": 20, "parsed_point_count": 68, "projected_h_span_grid": 51.20222473144531, "projected_h_span_vx": 2560.1112365722656, "projected_points": [ { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 28.6437410703027, "h": 205.33216857910156, "point_id": 42848, "row_index": 0, "w": 53.987823486328125 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 27.957052976951037, "h": 206.0241241455078, "point_id": 42849, "row_index": 1, "w": 54.05939865112305 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 27.525800318767548, "h": 206.44461059570313, "point_id": 42850, "row_index": 2, "w": 54.156612396240234 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 26.424673908080816, "h": 207.49981689453125, "point_id": 42851, "row_index": 3, "w": 54.47249221801758 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 25.633003086188065, "h": 208.26663208007813, "point_id": 42852, "row_index": 4, "w": 54.66961669921875 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 12.534738407242916, "h": 245.23634338378906, "point_id": 42853, "row_index": 5, "w": 1.1197316646575928 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 12.521021451820436, "h": 245.2017822265625, "point_id": 42854, "row_index": 6, "w": 1.2103452682495117 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 23.64262712178759, "h": 210.11468505859375, "point_id": 42855, "row_index": 7, "w": 55.46498107910156 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 22.921951853364117, "h": 210.77899169921875, "point_id": 42856, "row_index": 8, "w": 55.77580642700195 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 21.87999587608633, "h": 211.75929260253906, "point_id": 42857, "row_index": 9, "w": 56.15060043334961 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 21.231467155274352, "h": 212.37997436523438, "point_id": 42858, "row_index": 10, "w": 56.34235763549805 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 9.054040235429134, "h": 241.89073181152344, "point_id": 42859, "row_index": 11, "w": 0.11286772042512894 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 19.28662059984846, "h": 214.20944213867188, "point_id": 42860, "row_index": 12, "w": 57.05487823486328 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 18.631565492953598, "h": 214.83126831054688, "point_id": 42861, "row_index": 13, "w": 57.27395248413086 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 17.850728552825085, "h": 215.57052612304688, "point_id": 42862, "row_index": 14, "w": 57.545867919921875 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 16.99995527280654, "h": 216.3745574951172, "point_id": 42863, "row_index": 15, "w": 57.8523063659668 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 16.039856927119096, "h": 217.29537963867188, "point_id": 42864, "row_index": 16, "w": 58.1387939453125 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 14.26163479638018, "h": 246.78302001953125, "point_id": 42865, "row_index": 17, "w": 2.0646727085113525 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 14.265431047574486, "h": 218.99249267578125, "point_id": 42866, "row_index": 18, "w": 58.70056915283203 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 13.203901453859235, "h": 220.01416015625, "point_id": 42867, "row_index": 19, "w": 59.01122283935547 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 12.509596642340698, "h": 220.6835174560547, "point_id": 42868, "row_index": 20, "w": 59.21140670776367 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 11.828973468001884, "h": 221.35572814941406, "point_id": 42869, "row_index": 21, "w": 59.318790435791016 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 10.770690042461228, "h": 222.39022827148438, "point_id": 42870, "row_index": 22, "w": 59.54612731933594 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 9.65148893464465, "h": 223.5100555419922, "point_id": 42871, "row_index": 23, "w": 59.64252471923828 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 8.892399622474688, "h": 224.2660369873047, "point_id": 42872, "row_index": 24, "w": 59.729862213134766 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 7.729733236358512, "h": 225.43641662597656, "point_id": 42873, "row_index": 25, "w": 59.806941986083984 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 7.479955161797638, "h": 225.7200927734375, "point_id": 42874, "row_index": 26, "w": 59.68265151977539 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 7.849734398943035, "h": 225.35984802246094, "point_id": 42875, "row_index": 27, "w": 59.59920883178711 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 6.987042413937736, "h": 226.1923828125, "point_id": 42876, "row_index": 28, "w": 59.82773971557617 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 6.091981294817569, "h": 227.03457641601563, "point_id": 42877, "row_index": 29, "w": 60.16569137573242 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 5.2492205759048565, "h": 227.8290252685547, "point_id": 42878, "row_index": 30, "w": 60.49802780151367 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 2.7036196068362135, "h": 235.5540313720703, "point_id": 42879, "row_index": 31, "w": 62.28782653808594 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 3.707109092745962, "h": 229.31768798828125, "point_id": 42880, "row_index": 32, "w": 60.97292709350586 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 0.8281093242278191, "h": 232.9548797607422, "point_id": 42881, "row_index": 33, "w": 62.227867126464844 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 1.45230721535588, "h": 231.5550537109375, "point_id": 42882, "row_index": 34, "w": 61.54702377319336 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 0.7793814218788909, "h": 232.2261962890625, "point_id": 42883, "row_index": 35, "w": 61.49406433105469 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 0.17667918433291044, "h": 233.1753692626953, "point_id": 42884, "row_index": 36, "w": 61.422462463378906 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 1.0156117824146944, "h": 233.9934539794922, "point_id": 42885, "row_index": 37, "w": 61.189998626708984 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 2.0567661839488, "h": 235.00552368164063, "point_id": 42886, "row_index": 38, "w": 60.944740295410156 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 2.832761802657458, "h": 235.7146759033203, "point_id": 42887, "row_index": 39, "w": 60.59162139892578 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 4.724678029873661, "h": 237.55722045898438, "point_id": 42888, "row_index": 40, "w": 60.15426254272461 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 4.770854423044202, "h": 237.54966735839844, "point_id": 42889, "row_index": 41, "w": 59.96516799926758 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 5.0198147717510055, "h": 237.86962890625, "point_id": 42890, "row_index": 42, "w": 60.18227767944336 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 4.830202706948326, "h": 237.82330322265625, "point_id": 42891, "row_index": 43, "w": 61.14291000366211 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 5.568855766385326, "h": 238.53257751464844, "point_id": 42892, "row_index": 44, "w": 62.035606384277344 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 6.5721641732382325, "h": 239.47384643554688, "point_id": 42893, "row_index": 45, "w": 62.533531188964844 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 5.0929100216433785, "h": 235.6088104248047, "point_id": 42894, "row_index": 46, "w": 2.7749838829040527 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 5.997163566078643, "h": 238.69189453125, "point_id": 42895, "row_index": 47, "w": 0.2899843454360962 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 12.396866062669487, "h": 244.82203674316406, "point_id": 42896, "row_index": 48, "w": 2.132172107696533 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 13.745816147026206, "h": 246.10963439941406, "point_id": 42897, "row_index": 49, "w": 2.5343821048736572 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 12.366326476929707, "h": 244.8930206298828, "point_id": 42898, "row_index": 50, "w": 1.7895113229751587 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 11.821383091523778, "h": 244.5636749267578, "point_id": 42899, "row_index": 51, "w": 0.8558851480484009 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 12.847287201704809, "h": 245.64501953125, "point_id": 42900, "row_index": 52, "w": 0.6717299818992615 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 11.611695441625642, "h": 244.41738891601563, "point_id": 42901, "row_index": 53, "w": 0.5163369178771973 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 13.846808096738256, "h": 246.60719299316406, "point_id": 42902, "row_index": 54, "w": 0.9658257961273193 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 16.638402496555752, "h": 249.27066040039063, "point_id": 42903, "row_index": 55, "w": 1.8797876834869385 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 19.570664095535257, "h": 252.18682861328125, "point_id": 42904, "row_index": 56, "w": 2.2579946517944336 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 19.61858963518034, "h": 252.23472595214844, "point_id": 42905, "row_index": 57, "w": 2.262901544570923 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 18.841956849142118, "h": 251.46090698242188, "point_id": 42906, "row_index": 58, "w": 2.1711671352386475 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 20.202530221637257, "h": 252.87396240234375, "point_id": 42907, "row_index": 59, "w": 2.029740571975708 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 21.57038819205626, "h": 254.31155395507813, "point_id": 42908, "row_index": 60, "w": 1.7325513362884521 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 20.585601797898768, "h": 253.41561889648438, "point_id": 42909, "row_index": 61, "w": 1.0409702062606812 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 20.063792752160165, "h": 252.8654022216797, "point_id": 42910, "row_index": 62, "w": 1.2155170440673828 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 20.668103343815904, "h": 253.4456329345703, "point_id": 42911, "row_index": 63, "w": 1.4253208637237549 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 20.52873177073079, "h": 253.27777099609375, "point_id": 42912, "row_index": 64, "w": 1.6011178493499756 }, { "collection_id": 2522, "direction_sign": -1, "grid_distance_to_anchor": 21.27075345699861, "h": 254.003662109375, "point_id": 42913, "row_index": 65, "w": 1.7612156867980957 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 23.421510306851204, "h": 256.1269226074219, "point_id": 42914, "row_index": 66, "w": 2.1040401458740234 }, { "collection_id": 2522, "direction_sign": 1, "grid_distance_to_anchor": 23.8475129707163, "h": 256.5343933105469, "point_id": 42915, "row_index": 67, "w": 2.252767562866211 } ], "projected_w_span_grid": 11.787160396575928, "projected_w_span_vx": 589.3580198287964, "projection_mode": "normal-line", "skipped_point_count": 0, "skipped_points": [], "skipped_reasons": {}, "usable_point_count": 68, "windings": 1 }, "args": { "approval-inpaint": false, "approval-inpaint-corr-spacing": null, "approval-inpaint-output-mask": false, "approval-inpaint-output-mask-dilate": 3, "approval-inpaint-padding-frac": 0.25, "approval-inpaint-tifxyz": null, "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "crop": null, "cuda-gridsample": 1, "depth": 1, "device": "cuda", "downscale": 4.0, "erode-valid-mask": 0, "flatten-solver": "torch", "init-mode": "shell-dir-crop", "input": "/ephemeral/lasag_strip_outputs/.lasagna_point_strip_work/collection_2522/point_strip.lasagna.json", "mesh-h": 32, "mesh-step": 50, "mesh-w": 32, "model-h": 10560.111236572266, "model-init": "seed", "model-input": null, "model-output": "/tmp/fit_reopt_ep45oegx/model_reopt.pt", "model-w": 8589.358019828796, "model-w-unit": "voxels", "normal-mask-zero": 0, "out-dir": null, "progress": true, "pyramid-d": false, "seed": [ 17383.490234375, 13060.4814453125, 41954.0078125 ], "snapshot-interval": 1000, "sparse-prefetch-backend": "tensorstore", "subsample-mesh": 4, "subsample-winding": 4, "tifxyz-flow-gate-channels": true, "tifxyz-init": null, "winding-step": 25, "winding-volume": null, "windings": 1, "z-center": 0.0 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "2522": { "color": [ 0.35090112686157227, 0.059297747910022736, 0.7238379716873169 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap358", "points": { "42848": { "creation_time": 42848, "p": [ 16711.884765625, 13624.0263671875, 37193.7109375 ], "wind_a": 0.0 }, "42849": { "creation_time": 42849, "p": [ 16753.876953125, 13588.7900390625, 37303.26171875 ], "wind_a": 0.0 }, "42850": { "creation_time": 42850, "p": [ 16800.91015625, 13549.326171875, 37437.83203125 ], "wind_a": 0.0 }, "42851": { "creation_time": 42851, "p": [ 16865.859375, 13494.826171875, 37562.7109375 ], "wind_a": 0.0 }, "42852": { "creation_time": 42852, "p": [ 16914.857421875, 13453.7109375, 37696.21875 ], "wind_a": 0.0 }, "42853": { "creation_time": 42853, "p": [ 16982.755859375, 13396.73828125, 37816.828125 ], "wind_a": 0.0 }, "42854": { "creation_time": 42854, "p": [ 17049.626953125, 13340.6259765625, 37940.66796875 ], "wind_a": 0.0 }, "42855": { "creation_time": 42855, "p": [ 17121.31640625, 13280.4716796875, 38061.90625 ], "wind_a": 0.0 }, "42856": { "creation_time": 42856, "p": [ 17194.802734375, 13218.80859375, 38182.171875 ], "wind_a": 0.0 }, "42857": { "creation_time": 42857, "p": [ 17265.091796875, 13159.830078125, 38304.1640625 ], "wind_a": 0.0 }, "42858": { "creation_time": 42858, "p": [ 17327.013671875, 13107.8701171875, 38421.546875 ], "wind_a": 0.0 }, "42859": { "creation_time": 42859, "p": [ 17398.8359375, 13047.6044921875, 38542.7109375 ], "wind_a": 0.0 }, "42860": { "creation_time": 42860, "p": [ 17453.759765625, 13001.517578125, 38673.01171875 ], "wind_a": 0.0 }, "42861": { "creation_time": 42861, "p": [ 17505.361328125, 12958.21875, 38805.109375 ], "wind_a": 0.0 }, "42862": { "creation_time": 42862, "p": [ 17564.810546875, 12908.3349609375, 38932.96484375 ], "wind_a": 0.0 }, "42863": { "creation_time": 42863, "p": [ 17621.732421875, 12860.5712890625, 39059.5078125 ], "wind_a": 0.0 }, "42864": { "creation_time": 42864, "p": [ 17667.224609375, 12822.3984375, 39194.91015625 ], "wind_a": 0.0 }, "42865": { "creation_time": 42865, "p": [ 17709.216796875, 12787.162109375, 39332.203125 ], "wind_a": 0.0 }, "42866": { "creation_time": 42866, "p": [ 17740.712890625, 12760.7353515625, 39475.17578125 ], "wind_a": 0.0 }, "42867": { "creation_time": 42867, "p": [ 17751.2109375, 12751.92578125, 39629.5 ], "wind_a": 0.0 }, "42868": { "creation_time": 42868, "p": [ 17751.2109375, 12751.92578125, 39709.5 ], "wind_a": 0.0 }, "42869": { "creation_time": 42869, "p": [ 17732.041015625, 12768.0107421875, 39859.1328125 ], "wind_a": 0.0 }, "42870": { "creation_time": 42870, "p": [ 17704.759765625, 12790.90234375, 40004.3828125 ], "wind_a": 0.0 }, "42871": { "creation_time": 42871, "p": [ 17643.08984375, 12842.6513671875, 40152.48046875 ], "wind_a": 0.0 }, "42872": { "creation_time": 42872, "p": [ 17575.7109375, 12899.1875, 40276.046875 ], "wind_a": 0.0 }, "42873": { "creation_time": 42873, "p": [ 17498.92578125, 12963.619140625, 40391.546875 ], "wind_a": 0.0 }, "42874": { "creation_time": 42874, "p": [ 17420.189453125, 13029.6865234375, 40504.50390625 ], "wind_a": 0.0 }, "42875": { "creation_time": 42875, "p": [ 17405.013671875, 13042.419921875, 40649.9765625 ], "wind_a": 0.0 }, "42876": { "creation_time": 42876, "p": [ 17432.986328125, 13018.94921875, 40794.8515625 ], "wind_a": 0.0 }, "42877": { "creation_time": 42877, "p": [ 17455.677734375, 12999.9072265625, 40942.58203125 ], "wind_a": 0.0 }, "42878": { "creation_time": 42878, "p": [ 17479.0625, 12980.287109375, 41089.9375 ], "wind_a": 0.0 }, "42879": { "creation_time": 42879, "p": [ 17502.4453125, 12960.666015625, 41237.296875 ], "wind_a": 0.0 }, "42880": { "creation_time": 42880, "p": [ 17504.392578125, 12959.0302734375, 41394.1328125 ], "wind_a": 0.0 }, "42881": { "creation_time": 42881, "p": [ 17516.0859375, 12949.220703125, 41545.703125 ], "wind_a": 0.0 }, "42882": { "creation_time": 42882, "p": [ 17488.8046875, 12972.111328125, 41690.953125 ], "wind_a": 0.0 }, "42883": { "creation_time": 42883, "p": [ 17438.466796875, 13014.349609375, 41823.734375 ], "wind_a": 0.0 }, "42884": { "creation_time": 42884, "p": [ 17383.490234375, 13060.4814453125, 41954.0078125 ], "wind_a": 0.0 }, "42885": { "creation_time": 42885, "p": [ 17303.947265625, 13127.224609375, 42068.01953125 ], "wind_a": 0.0 }, "42886": { "creation_time": 42886, "p": [ 17208.384765625, 13207.412109375, 42149.5234375 ], "wind_a": 0.0 }, "42887": { "creation_time": 42887, "p": [ 17106.876953125, 13292.5869140625, 42210.80859375 ], "wind_a": 0.0 }, "42888": { "creation_time": 42888, "p": [ 16906.130859375, 13461.033203125, 42348.203125 ], "wind_a": 0.0 }, "42889": { "creation_time": 42889, "p": [ 16832.19140625, 13523.076171875, 42381.51953125 ], "wind_a": 0.0 }, "42890": { "creation_time": 42890, "p": [ 16744.025390625, 13597.056640625, 42482.08203125 ], "wind_a": 0.0 }, "42891": { "creation_time": 42891, "p": [ 16690.443359375, 13642.0185546875, 42613.109375 ], "wind_a": 0.0 }, "42892": { "creation_time": 42892, "p": [ 16667.931640625, 13660.9072265625, 42760.9375 ], "wind_a": 0.0 }, "42893": { "creation_time": 42893, "p": [ 16621.142578125, 13700.16796875, 42895.63671875 ], "wind_a": 0.0 }, "42894": { "creation_time": 42894, "p": [ 16614.884765625, 13705.4189453125, 43045.21875 ], "wind_a": 0.0 }, "42895": { "creation_time": 42895, "p": [ 16650.91796875, 13675.18359375, 43185.734375 ], "wind_a": 0.0 }, "42896": { "creation_time": 42896, "p": [ 16603.47265625, 13714.9951171875, 43620.61328125 ], "wind_a": 0.0 }, "42897": { "creation_time": 42897, "p": [ 16511.822265625, 13791.8994140625, 43718.046875 ], "wind_a": 0.0 }, "42898": { "creation_time": 42898, "p": [ 16433.986328125, 13857.2119140625, 43832.70703125 ], "wind_a": 0.0 }, "42899": { "creation_time": 42899, "p": [ 16429.732421875, 13860.78125, 43985.8046875 ], "wind_a": 0.0 }, "42900": { "creation_time": 42900, "p": [ 16382.943359375, 13900.0419921875, 44120.5078125 ], "wind_a": 0.0 }, "42901": { "creation_time": 42901, "p": [ 16404.2109375, 13882.1962890625, 44269.0078125 ], "wind_a": 0.0 }, "42902": { "creation_time": 42902, "p": [ 16433.986328125, 13857.2119140625, 44412.90625 ], "wind_a": 0.0 }, "42903": { "creation_time": 42903, "p": [ 16425.478515625, 13864.3505859375, 44563.70703125 ], "wind_a": 0.0 }, "42904": { "creation_time": 42904, "p": [ 16268.09765625, 13996.41015625, 44635.890625 ], "wind_a": 0.0 }, "42905": { "creation_time": 42905, "p": [ 16213.6826171875, 14042.0693359375, 44673.609375 ], "wind_a": 0.0 }, "42906": { "creation_time": 42906, "p": [ 16126.28515625, 14115.4052734375, 44776.59375 ], "wind_a": 0.0 }, "42907": { "creation_time": 42907, "p": [ 16059.4248046875, 14171.5078125, 44897.1875 ], "wind_a": 0.0 }, "42908": { "creation_time": 42908, "p": [ 15960.298828125, 14254.6845703125, 44971.0625 ], "wind_a": 0.0 }, "42909": { "creation_time": 42909, "p": [ 15873.4169921875, 14327.5869140625, 45067.8203125 ], "wind_a": 0.0 }, "42910": { "creation_time": 42910, "p": [ 15840.888671875, 14354.8818359375, 45210.234375 ], "wind_a": 0.0 }, "42911": { "creation_time": 42911, "p": [ 15825.7275390625, 14367.603515625, 45362.03515625 ], "wind_a": 0.0 }, "42912": { "creation_time": 42912, "p": [ 15825.7275390625, 14367.603515625, 45442.03515625 ], "wind_a": 0.0 }, "42913": { "creation_time": 42913, "p": [ 15838.48828125, 14356.896484375, 45595.1328125 ], "wind_a": 0.0 }, "42914": { "creation_time": 42914, "p": [ 15817.2197265625, 14374.7412109375, 45743.6328125 ], "wind_a": 0.0 }, "42915": { "creation_time": 42915, "p": [ 15783.19140625, 14403.294921875, 45885.234375 ], "wind_a": 0.0 } }, "tags": { "same_wrap_direction": "z" } } } }, "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ], "vc3d_volume_shape_zyx": [ 18946, 8174, 8174 ] }, "format": "tifxyz", "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "lasagna_job": { "config": { "args": { "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "init-mode": "shell-dir-crop", "mesh-step": 50.0, "model-h": 5000.0, "model-init": "seed", "model-w": 5000.0, "model-w-unit": "voxels", "seed": [ 4372.201171875, 3243.02783203125, 10422.73828125 ], "tifxyz-flow-gate-channels": true, "windings": 1 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "2522": { "color": [ 0.35090112686157227, 0.059297747910022736, 0.7238379716873169 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap358", "points": { "42848": { "creation_time": 42848, "p": [ 4177.97119140625, 3406.006591796875, 9298.427734375 ], "wind_a": 0.0 }, "42849": { "creation_time": 42849, "p": [ 4188.46923828125, 3397.197509765625, 9325.8154296875 ], "wind_a": 0.0 }, "42850": { "creation_time": 42850, "p": [ 4200.2275390625, 3387.33154296875, 9359.4580078125 ], "wind_a": 0.0 }, "42851": { "creation_time": 42851, "p": [ 4216.46484375, 3373.70654296875, 9390.677734375 ], "wind_a": 0.0 }, "42852": { "creation_time": 42852, "p": [ 4228.71435546875, 3363.427734375, 9424.0546875 ], "wind_a": 0.0 }, "42853": { "creation_time": 42853, "p": [ 4245.68896484375, 3349.1845703125, 9454.20703125 ], "wind_a": 0.0 }, "42854": { "creation_time": 42854, "p": [ 4262.40673828125, 3335.156494140625, 9485.1669921875 ], "wind_a": 0.0 }, "42855": { "creation_time": 42855, "p": [ 4280.3291015625, 3320.117919921875, 9515.4765625 ], "wind_a": 0.0 }, "42856": { "creation_time": 42856, "p": [ 4298.70068359375, 3304.7021484375, 9545.54296875 ], "wind_a": 0.0 }, "42857": { "creation_time": 42857, "p": [ 4316.27294921875, 3289.95751953125, 9576.041015625 ], "wind_a": 0.0 }, "42858": { "creation_time": 42858, "p": [ 4331.75341796875, 3276.967529296875, 9605.38671875 ], "wind_a": 0.0 }, "42859": { "creation_time": 42859, "p": [ 4349.708984375, 3261.901123046875, 9635.677734375 ], "wind_a": 0.0 }, "42860": { "creation_time": 42860, "p": [ 4363.43994140625, 3250.37939453125, 9668.2529296875 ], "wind_a": 0.0 }, "42861": { "creation_time": 42861, "p": [ 4376.34033203125, 3239.5546875, 9701.27734375 ], "wind_a": 0.0 }, "42862": { "creation_time": 42862, "p": [ 4391.20263671875, 3227.083740234375, 9733.2412109375 ], "wind_a": 0.0 }, "42863": { "creation_time": 42863, "p": [ 4405.43310546875, 3215.142822265625, 9764.876953125 ], "wind_a": 0.0 }, "42864": { "creation_time": 42864, "p": [ 4416.80615234375, 3205.599609375, 9798.7275390625 ], "wind_a": 0.0 }, "42865": { "creation_time": 42865, "p": [ 4427.30419921875, 3196.79052734375, 9833.05078125 ], "wind_a": 0.0 }, "42866": { "creation_time": 42866, "p": [ 4435.17822265625, 3190.183837890625, 9868.7939453125 ], "wind_a": 0.0 }, "42867": { "creation_time": 42867, "p": [ 4437.802734375, 3187.9814453125, 9907.375 ], "wind_a": 0.0 }, "42868": { "creation_time": 42868, "p": [ 4437.802734375, 3187.9814453125, 9927.375 ], "wind_a": 0.0 }, "42869": { "creation_time": 42869, "p": [ 4433.01025390625, 3192.002685546875, 9964.783203125 ], "wind_a": 0.0 }, "42870": { "creation_time": 42870, "p": [ 4426.18994140625, 3197.7255859375, 10001.095703125 ], "wind_a": 0.0 }, "42871": { "creation_time": 42871, "p": [ 4410.7724609375, 3210.662841796875, 10038.1201171875 ], "wind_a": 0.0 }, "42872": { "creation_time": 42872, "p": [ 4393.927734375, 3224.796875, 10069.01171875 ], "wind_a": 0.0 }, "42873": { "creation_time": 42873, "p": [ 4374.7314453125, 3240.90478515625, 10097.88671875 ], "wind_a": 0.0 }, "42874": { "creation_time": 42874, "p": [ 4355.04736328125, 3257.421630859375, 10126.1259765625 ], "wind_a": 0.0 }, "42875": { "creation_time": 42875, "p": [ 4351.25341796875, 3260.60498046875, 10162.494140625 ], "wind_a": 0.0 }, "42876": { "creation_time": 42876, "p": [ 4358.24658203125, 3254.7373046875, 10198.712890625 ], "wind_a": 0.0 }, "42877": { "creation_time": 42877, "p": [ 4363.91943359375, 3249.976806640625, 10235.6455078125 ], "wind_a": 0.0 }, "42878": { "creation_time": 42878, "p": [ 4369.765625, 3245.07177734375, 10272.484375 ], "wind_a": 0.0 }, "42879": { "creation_time": 42879, "p": [ 4375.611328125, 3240.16650390625, 10309.32421875 ], "wind_a": 0.0 }, "42880": { "creation_time": 42880, "p": [ 4376.09814453125, 3239.757568359375, 10348.533203125 ], "wind_a": 0.0 }, "42881": { "creation_time": 42881, "p": [ 4379.021484375, 3237.30517578125, 10386.42578125 ], "wind_a": 0.0 }, "42882": { "creation_time": 42882, "p": [ 4372.201171875, 3243.02783203125, 10422.73828125 ], "wind_a": 0.0 }, "42883": { "creation_time": 42883, "p": [ 4359.61669921875, 3253.58740234375, 10455.93359375 ], "wind_a": 0.0 }, "42884": { "creation_time": 42884, "p": [ 4345.87255859375, 3265.120361328125, 10488.501953125 ], "wind_a": 0.0 }, "42885": { "creation_time": 42885, "p": [ 4325.98681640625, 3281.80615234375, 10517.0048828125 ], "wind_a": 0.0 }, "42886": { "creation_time": 42886, "p": [ 4302.09619140625, 3301.85302734375, 10537.380859375 ], "wind_a": 0.0 }, "42887": { "creation_time": 42887, "p": [ 4276.71923828125, 3323.146728515625, 10552.7021484375 ], "wind_a": 0.0 }, "42888": { "creation_time": 42888, "p": [ 4226.53271484375, 3365.25830078125, 10587.05078125 ], "wind_a": 0.0 }, "42889": { "creation_time": 42889, "p": [ 4208.0478515625, 3380.76904296875, 10595.3798828125 ], "wind_a": 0.0 }, "42890": { "creation_time": 42890, "p": [ 4186.00634765625, 3399.26416015625, 10620.5205078125 ], "wind_a": 0.0 }, "42891": { "creation_time": 42891, "p": [ 4172.61083984375, 3410.504638671875, 10653.27734375 ], "wind_a": 0.0 }, "42892": { "creation_time": 42892, "p": [ 4166.98291015625, 3415.226806640625, 10690.234375 ], "wind_a": 0.0 }, "42893": { "creation_time": 42893, "p": [ 4155.28564453125, 3425.0419921875, 10723.9091796875 ], "wind_a": 0.0 }, "42894": { "creation_time": 42894, "p": [ 4153.72119140625, 3426.354736328125, 10761.3046875 ], "wind_a": 0.0 }, "42895": { "creation_time": 42895, "p": [ 4162.7294921875, 3418.7958984375, 10796.43359375 ], "wind_a": 0.0 }, "42896": { "creation_time": 42896, "p": [ 4150.8681640625, 3428.748779296875, 10905.1533203125 ], "wind_a": 0.0 }, "42897": { "creation_time": 42897, "p": [ 4127.95556640625, 3447.974853515625, 10929.51171875 ], "wind_a": 0.0 }, "42898": { "creation_time": 42898, "p": [ 4108.49658203125, 3464.302978515625, 10958.1767578125 ], "wind_a": 0.0 }, "42899": { "creation_time": 42899, "p": [ 4107.43310546875, 3465.1953125, 10996.451171875 ], "wind_a": 0.0 }, "42900": { "creation_time": 42900, "p": [ 4095.73583984375, 3475.010498046875, 11030.126953125 ], "wind_a": 0.0 }, "42901": { "creation_time": 42901, "p": [ 4101.052734375, 3470.549072265625, 11067.251953125 ], "wind_a": 0.0 }, "42902": { "creation_time": 42902, "p": [ 4108.49658203125, 3464.302978515625, 11103.2265625 ], "wind_a": 0.0 }, "42903": { "creation_time": 42903, "p": [ 4106.36962890625, 3466.087646484375, 11140.9267578125 ], "wind_a": 0.0 }, "42904": { "creation_time": 42904, "p": [ 4067.0244140625, 3499.1025390625, 11158.97265625 ], "wind_a": 0.0 }, "42905": { "creation_time": 42905, "p": [ 4053.420654296875, 3510.517333984375, 11168.40234375 ], "wind_a": 0.0 }, "42906": { "creation_time": 42906, "p": [ 4031.5712890625, 3528.851318359375, 11194.1484375 ], "wind_a": 0.0 }, "42907": { "creation_time": 42907, "p": [ 4014.856201171875, 3542.876953125, 11224.296875 ], "wind_a": 0.0 }, "42908": { "creation_time": 42908, "p": [ 3990.07470703125, 3563.671142578125, 11242.765625 ], "wind_a": 0.0 }, "42909": { "creation_time": 42909, "p": [ 3968.354248046875, 3581.896728515625, 11266.955078125 ], "wind_a": 0.0 }, "42910": { "creation_time": 42910, "p": [ 3960.22216796875, 3588.720458984375, 11302.55859375 ], "wind_a": 0.0 }, "42911": { "creation_time": 42911, "p": [ 3956.431884765625, 3591.90087890625, 11340.5087890625 ], "wind_a": 0.0 }, "42912": { "creation_time": 42912, "p": [ 3956.431884765625, 3591.90087890625, 11360.5087890625 ], "wind_a": 0.0 }, "42913": { "creation_time": 42913, "p": [ 3959.6220703125, 3589.22412109375, 11398.783203125 ], "wind_a": 0.0 }, "42914": { "creation_time": 42914, "p": [ 3954.304931640625, 3593.685302734375, 11435.908203125 ], "wind_a": 0.0 }, "42915": { "creation_time": 42915, "p": [ 3945.7978515625, 3600.82373046875, 11471.30859375 ], "wind_a": 0.0 } }, "tags": { "same_wrap_direction": "z" } } } }, "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ] }, "linked_surfaces": [], "model": null, "volume_shape_zyx": [ 18946, 8174, 8174 ] }, "model_source": "/tmp/fit_reopt_ep45oegx/model_reopt.pt", "scale": [ 0.07999999821186066, 0.07999999821186066 ], "tags": { "date_last_modified": "20260614185644017", "reviewed": { "date": "20260604080934169" } }, "type": "seg", "uuid": "same_wrap000358_lasagna" }