{ "area_vx2": 1034843.75, "base_shape_zyx": [ 18946, 8174, 8174 ], "bbox": [ [ 5337.59912109375, 3672.921875, 8969.349609375 ], [ 6118.99462890625, 4699.97509765625, 9541.79296875 ] ], "extra_channels": [ { "dtype": "float32", "file": "flow_gate_local_contrast.tif", "name": "flow_gate_local_contrast", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.local_contrast", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } }, { "dtype": "float32", "file": "flow_gate_component_normalized.tif", "name": "flow_gate_component_normalized", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.component_normalized", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } } ], "fit_config": { "_corr_point_roi_init_": { "effective_seed": [ 24236.455078125, 16840.84765625, 37037.04296875 ], "final_anchor_h": 223.73405992984772, "final_anchor_w": 50.90063889324665, "final_shell_id": "shell_0002.tifxyz", "final_trim_bottom": 33, "final_trim_top": 0, "init_margin_grid_points": 80, "initial_seed": [ 24264.21875, 17375.546875, 37037.04296875 ], "initial_shell_id": "shell_0001.tifxyz", "initial_skipped_point_count": 0, "initial_skipped_reasons": {}, "initial_trim_bottom": 36, "initial_trim_top": 4, "initial_usable_point_count": 73, "mode": "corr-point-roi", "model_h": 8875.504302978516, "model_w": 9079.112815856934, "model_w_unit": "voxels", "output_radius_grid_points": 20, "parsed_point_count": 73, "projected_h_span_grid": 17.510086059570313, "projected_h_span_vx": 875.5043029785156, "projected_points": [ { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 9.026269896068378, "h": 223.5916748046875, "point_id": 45351, "row_index": 0, "w": 41.875492095947266 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 8.663112058778273, "h": 223.56651306152344, "point_id": 45352, "row_index": 1, "w": 42.2391471862793 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 8.319635633750174, "h": 223.5416259765625, "point_id": 45353, "row_index": 2, "w": 42.583229064941406 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 7.951677443266456, "h": 223.53269958496094, "point_id": 45354, "row_index": 3, "w": 42.95151138305664 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 7.563618812907588, "h": 223.52740478515625, "point_id": 45355, "row_index": 4, "w": 43.33984375 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 7.1818202707515075, "h": 223.5106658935547, "point_id": 45356, "row_index": 5, "w": 43.722293853759766 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 6.829117210218896, "h": 223.4800262451172, "point_id": 45357, "row_index": 6, "w": 44.07624816894531 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 6.48325230206917, "h": 223.46267700195313, "point_id": 45358, "row_index": 7, "w": 44.42306900024414 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 6.124450866587222, "h": 223.44834899902344, "point_id": 45359, "row_index": 8, "w": 44.78285598754883 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 5.743526077711579, "h": 223.43939208984375, "point_id": 45360, "row_index": 9, "w": 45.164676666259766 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 5.368072246677953, "h": 223.4135284423828, "point_id": 45361, "row_index": 10, "w": 45.542144775390625 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 5.012692709694654, "h": 223.3831787109375, "point_id": 45362, "row_index": 11, "w": 45.90024185180664 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 4.667989991337006, "h": 223.3722381591797, "point_id": 45363, "row_index": 12, "w": 46.2466926574707 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 4.28165243798053, "h": 223.41969299316406, "point_id": 45364, "row_index": 13, "w": 46.63054275512695 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 3.9467847933922866, "h": 223.42813110351563, "point_id": 45365, "row_index": 14, "w": 46.965728759765625 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 3.5881965160007807, "h": 223.42697143554688, "point_id": 45366, "row_index": 15, "w": 47.32560729980469 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 3.206603854866874, "h": 223.4012451171875, "point_id": 45367, "row_index": 16, "w": 47.71135330200195 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 4.241199027477527, "h": 227.21226501464844, "point_id": 45368, "row_index": 17, "w": 48.47373580932617 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 2.5108566649163793, "h": 223.50106811523438, "point_id": 45369, "row_index": 18, "w": 48.40061569213867 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 2.2075062607536236, "h": 223.50384521484375, "point_id": 45370, "row_index": 19, "w": 48.705169677734375 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 1.8230257160956644, "h": 223.5132598876953, "point_id": 45371, "row_index": 20, "w": 49.091033935546875 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 1.2972849960386363, "h": 223.554443359375, "point_id": 45372, "row_index": 21, "w": 49.615848541259766 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 0.7746777033623949, "h": 223.6269073486328, "point_id": 45373, "row_index": 22, "w": 50.13340759277344 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 0.3446601020567864, "h": 223.69287109375, "point_id": 45374, "row_index": 23, "w": 50.558448791503906 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 0.09779366897000023, "h": 223.7267303466797, "point_id": 45375, "row_index": 24, "w": 50.9981575012207 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 0.5608601476182598, "h": 223.7867889404297, "point_id": 45376, "row_index": 25, "w": 51.459014892578125 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 0.9415025365090262, "h": 223.86813354492188, "point_id": 45377, "row_index": 26, "w": 51.83254623413086 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 1.3004507666339165, "h": 223.8852081298828, "point_id": 45378, "row_index": 27, "w": 52.19227600097656 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 1.6144533556772418, "h": 223.82603454589844, "point_id": 45379, "row_index": 28, "w": 52.51247024536133 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 1.9462428825436882, "h": 223.80023193359375, "point_id": 45380, "row_index": 29, "w": 52.84575653076172 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 2.279253625597776, "h": 223.68252563476563, "point_id": 45381, "row_index": 30, "w": 53.1793098449707 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 2.6361613785322158, "h": 223.586669921875, "point_id": 45382, "row_index": 31, "w": 53.532676696777344 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 2.977716423021324, "h": 223.61708068847656, "point_id": 45383, "row_index": 32, "w": 53.87605667114258 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 3.32006296213995, "h": 223.6825714111328, "point_id": 45384, "row_index": 33, "w": 54.22030258178711 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 3.6483743688122225, "h": 223.78285217285156, "point_id": 45385, "row_index": 34, "w": 54.54868698120117 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 4.008138354001298, "h": 223.87754821777344, "point_id": 45386, "row_index": 35, "w": 54.90620803833008 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 4.342493288828733, "h": 223.9601287841797, "point_id": 45387, "row_index": 36, "w": 55.23724365234375 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 4.7101545676801635, "h": 224.11878967285156, "point_id": 45388, "row_index": 37, "w": 55.595054626464844 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 5.397917270923834, "h": 225.7061004638672, "point_id": 45389, "row_index": 38, "w": 55.92543411254883 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 5.820815949310045, "h": 225.87110900878906, "point_id": 45390, "row_index": 39, "w": 56.314964294433594 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 5.94216914525322, "h": 224.13714599609375, "point_id": 45391, "row_index": 40, "w": 56.82912063598633 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 6.596003721346971, "h": 224.13734436035156, "point_id": 45392, "row_index": 41, "w": 57.48430252075195 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 7.419100061158501, "h": 224.0287322998047, "point_id": 45393, "row_index": 42, "w": 58.31388473510742 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 8.171076499216976, "h": 223.9945526123047, "point_id": 45394, "row_index": 43, "w": 59.067562103271484 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 8.700690103555589, "h": 223.93507385253906, "point_id": 45395, "row_index": 44, "w": 59.59900665283203 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 9.242850828181599, "h": 223.53411865234375, "point_id": 45396, "row_index": 45, "w": 60.141326904296875 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 9.779467631644666, "h": 223.15707397460938, "point_id": 45397, "row_index": 46, "w": 60.66307067871094 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 10.220965504766594, "h": 222.96908569335938, "point_id": 45398, "row_index": 47, "w": 61.09293746948242 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 10.601637213436655, "h": 222.84088134765625, "point_id": 45399, "row_index": 48, "w": 61.46458435058594 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 11.034488714710678, "h": 222.70333862304688, "point_id": 45400, "row_index": 49, "w": 61.88688278198242 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 11.462104489824393, "h": 222.5481719970703, "point_id": 45401, "row_index": 50, "w": 62.301231384277344 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 11.802956235137426, "h": 232.5902099609375, "point_id": 45402, "row_index": 51, "w": 43.09817886352539 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 12.21544783863363, "h": 232.7408905029297, "point_id": 45403, "row_index": 52, "w": 42.648719787597656 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 11.301555430498924, "h": 232.10031127929688, "point_id": 45404, "row_index": 53, "w": 43.302547454833984 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 8.807845378882059, "h": 230.2044219970703, "point_id": 45405, "row_index": 54, "w": 44.92464065551758 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 7.2143809700910735, "h": 228.72792053222656, "point_id": 45406, "row_index": 55, "w": 45.69404220581055 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 7.339557146271621, "h": 228.84950256347656, "point_id": 45407, "row_index": 56, "w": 45.63743209838867 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 7.924143211207037, "h": 229.28994750976563, "point_id": 45408, "row_index": 57, "w": 45.250492095947266 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 8.499989083946474, "h": 229.48817443847656, "point_id": 45409, "row_index": 58, "w": 44.64444351196289 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 8.519409695804947, "h": 229.32093811035156, "point_id": 45410, "row_index": 59, "w": 44.468910217285156 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 8.400795294104386, "h": 228.0658721923828, "point_id": 45411, "row_index": 60, "w": 43.70280838012695 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 9.685986287286275, "h": 227.22918701171875, "point_id": 45412, "row_index": 61, "w": 41.86723327636719 }, { "collection_id": 769, "direction_sign": 1, "grid_distance_to_anchor": 10.37716271123776, "h": 225.73886108398438, "point_id": 45413, "row_index": 62, "w": 40.71897506713867 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 11.66339449765491, "h": 216.15830993652344, "point_id": 45414, "row_index": 63, "w": 42.032562255859375 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 7.377960045813962, "h": 220.9056854248047, "point_id": 45415, "row_index": 64, "w": 44.08634567260742 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 6.5980515901454275, "h": 220.14324951171875, "point_id": 45416, "row_index": 65, "w": 45.365264892578125 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 7.006707982668318, "h": 219.17416381835938, "point_id": 45417, "row_index": 66, "w": 45.58074188232422 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 7.462462963789704, "h": 218.49021911621094, "point_id": 45418, "row_index": 67, "w": 45.59116744995117 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 7.554110087014503, "h": 218.006103515625, "point_id": 45419, "row_index": 68, "w": 45.97569274902344 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 8.166199533342493, "h": 217.05271911621094, "point_id": 45420, "row_index": 69, "w": 46.20526885986328 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 9.06280444112475, "h": 216.04515075683594, "point_id": 45421, "row_index": 70, "w": 46.103233337402344 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 9.745433479611767, "h": 215.23080444335938, "point_id": 45422, "row_index": 71, "w": 46.13953399658203 }, { "collection_id": 769, "direction_sign": -1, "grid_distance_to_anchor": 7.971385948355855, "h": 224.13546752929688, "point_id": 45423, "row_index": 72, "w": 58.86191177368164 } ], "projected_w_span_grid": 21.582256317138672, "projected_w_span_vx": 1079.1128158569336, "projection_mode": "normal-line", "skipped_point_count": 0, "skipped_points": [], "skipped_reasons": {}, "usable_point_count": 73, "windings": 1 }, "args": { "approval-inpaint": false, "approval-inpaint-corr-spacing": null, "approval-inpaint-output-mask": false, "approval-inpaint-output-mask-dilate": 3, "approval-inpaint-padding-frac": 0.25, "approval-inpaint-tifxyz": null, "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "crop": null, "cuda-gridsample": 1, "depth": 1, "device": "cuda", "downscale": 4.0, "erode-valid-mask": 0, "flatten-solver": "torch", "init-mode": "shell-dir-crop", "input": "/ephemeral/lasag_strip_outputs/.lasagna_point_strip_work/collection_769/point_strip.lasagna.json", "mesh-h": 32, "mesh-step": 50, "mesh-w": 32, "model-h": 8875.504302978516, "model-init": "seed", "model-input": null, "model-output": "/tmp/fit_reopt_zkvzjszl/model_reopt.pt", "model-w": 9079.112815856934, "model-w-unit": "voxels", "normal-mask-zero": 0, "out-dir": null, "progress": true, "pyramid-d": false, "seed": [ 24236.455078125, 16840.84765625, 37037.04296875 ], "snapshot-interval": 1000, "sparse-prefetch-backend": "tensorstore", "subsample-mesh": 4, "subsample-winding": 4, "tifxyz-flow-gate-channels": true, "tifxyz-init": null, "winding-step": 25, "winding-volume": null, "windings": 1, "z-center": 0.0 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "769": { "color": [ 0.6643162369728088, 0.39484161138534546, 0.48252543807029724 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap398", "points": { "45351": { "creation_time": 45351, "p": [ 23081.494140625, 15464.3017578125, 37037.04296875 ], "wind_a": 0.0 }, "45352": { "creation_time": 45352, "p": [ 23118.431640625, 15529.001953125, 37037.04296875 ], "wind_a": 0.0 }, "45353": { "creation_time": 45353, "p": [ 23159.294921875, 15592.076171875, 37037.04296875 ], "wind_a": 0.0 }, "45354": { "creation_time": 45354, "p": [ 23211.9375, 15650.2705078125, 37037.04296875 ], "wind_a": 0.0 }, "45355": { "creation_time": 45355, "p": [ 23268.505859375, 15706.8388671875, 37037.04296875 ], "wind_a": 0.0 }, "45356": { "creation_time": 45356, "p": [ 23314.70703125, 15767.701171875, 37037.04296875 ], "wind_a": 0.0 }, "45357": { "creation_time": 45357, "p": [ 23354.158203125, 15831.361328125, 37037.04296875 ], "wind_a": 0.0 }, "45358": { "creation_time": 45358, "p": [ 23402.875, 15891.181640625, 37037.04296875 ], "wind_a": 0.0 }, "45359": { "creation_time": 45359, "p": [ 23457.142578125, 15945.4501953125, 37037.04296875 ], "wind_a": 0.0 }, "45360": { "creation_time": 45360, "p": [ 23509.78515625, 16003.6455078125, 37037.04296875 ], "wind_a": 0.0 }, "45361": { "creation_time": 45361, "p": [ 23553.47265625, 16065.548828125, 37037.04296875 ], "wind_a": 0.0 }, "45362": { "creation_time": 45362, "p": [ 23599.36328125, 16126.541015625, 37037.04296875 ], "wind_a": 0.0 }, "45363": { "creation_time": 45363, "p": [ 23642.31640625, 16185.49609375, 37037.04296875 ], "wind_a": 0.0 }, "45364": { "creation_time": 45364, "p": [ 23698.421875, 16242.2568359375, 37037.04296875 ], "wind_a": 0.0 }, "45365": { "creation_time": 45365, "p": [ 23756.6171875, 16294.8984375, 37037.04296875 ], "wind_a": 0.0 }, "45366": { "creation_time": 45366, "p": [ 23813.185546875, 16351.466796875, 37037.04296875 ], "wind_a": 0.0 }, "45367": { "creation_time": 45367, "p": [ 23871.37890625, 16404.109375, 37037.04296875 ], "wind_a": 0.0 }, "45368": { "creation_time": 45368, "p": [ 23924.0234375, 16462.3046875, 37037.04296875 ], "wind_a": 0.0 }, "45369": { "creation_time": 45369, "p": [ 23983.84375, 16511.01953125, 37037.04296875 ], "wind_a": 0.0 }, "45370": { "creation_time": 45370, "p": [ 24050.169921875, 16544.03125, 37037.04296875 ], "wind_a": 0.0 }, "45371": { "creation_time": 45371, "p": [ 24116.49609375, 16577.041015625, 37037.04296875 ], "wind_a": 0.0 }, "45372": { "creation_time": 45372, "p": [ 24172.390625, 16627.3828125, 37037.04296875 ], "wind_a": 0.0 }, "45373": { "creation_time": 45373, "p": [ 24197.5859375, 16696.947265625, 37037.04296875 ], "wind_a": 0.0 }, "45374": { "creation_time": 45374, "p": [ 24214.85546875, 16769.794921875, 37037.04296875 ], "wind_a": 0.0 }, "45375": { "creation_time": 45375, "p": [ 24236.455078125, 16840.84765625, 37037.04296875 ], "wind_a": 0.0 }, "45376": { "creation_time": 45376, "p": [ 24242.0078125, 16918.546875, 37037.04296875 ], "wind_a": 0.0 }, "45377": { "creation_time": 45377, "p": [ 24230.90234375, 16993.947265625, 37037.04296875 ], "wind_a": 0.0 }, "45378": { "creation_time": 45378, "p": [ 24225.349609375, 17071.6484375, 37037.04296875 ], "wind_a": 0.0 }, "45379": { "creation_time": 45379, "p": [ 24228.80078125, 17150.21875, 37037.04296875 ], "wind_a": 0.0 }, "45380": { "creation_time": 45380, "p": [ 24242.0078125, 17224.74609375, 37037.04296875 ], "wind_a": 0.0 }, "45381": { "creation_time": 45381, "p": [ 24253.11328125, 17300.1484375, 37037.04296875 ], "wind_a": 0.0 }, "45382": { "creation_time": 45382, "p": [ 24264.21875, 17375.546875, 37037.04296875 ], "wind_a": 0.0 }, "45383": { "creation_time": 45383, "p": [ 24275.32421875, 17450.947265625, 37037.04296875 ], "wind_a": 0.0 }, "45384": { "creation_time": 45384, "p": [ 24286.4296875, 17526.34765625, 37037.04296875 ], "wind_a": 0.0 }, "45385": { "creation_time": 45385, "p": [ 24303.087890625, 17599.447265625, 37037.04296875 ], "wind_a": 0.0 }, "45386": { "creation_time": 45386, "p": [ 24319.74609375, 17672.546875, 37037.04296875 ], "wind_a": 0.0 }, "45387": { "creation_time": 45387, "p": [ 24336.404296875, 17745.6484375, 37037.04296875 ], "wind_a": 0.0 }, "45388": { "creation_time": 45388, "p": [ 24353.134765625, 17818.716796875, 37037.04296875 ], "wind_a": 0.0 }, "45389": { "creation_time": 45389, "p": [ 24369.720703125, 17891.84765625, 37037.04296875 ], "wind_a": 0.0 }, "45390": { "creation_time": 45390, "p": [ 24383.818359375, 17966.0078125, 37037.04296875 ], "wind_a": 0.0 }, "45391": { "creation_time": 45391, "p": [ 24397.197265625, 18040.46484375, 37037.04296875 ], "wind_a": 0.0 }, "45392": { "creation_time": 45392, "p": [ 24397.484375, 18115.74609375, 37037.04296875 ], "wind_a": 0.0 }, "45393": { "creation_time": 45393, "p": [ 24386.044921875, 18191.0078125, 37037.04296875 ], "wind_a": 0.0 }, "45394": { "creation_time": 45394, "p": [ 24341.95703125, 18252.74609375, 37037.04296875 ], "wind_a": 0.0 }, "45395": { "creation_time": 45395, "p": [ 24292.5390625, 18312.27734375, 37037.04296875 ], "wind_a": 0.0 }, "45396": { "creation_time": 45396, "p": [ 24235.970703125, 18368.84765625, 37037.04296875 ], "wind_a": 0.0 }, "45397": { "creation_time": 45397, "p": [ 24174.5234375, 18413.63671875, 37037.04296875 ], "wind_a": 0.0 }, "45398": { "creation_time": 45398, "p": [ 24111.44921875, 18454.5, 37037.04296875 ], "wind_a": 0.0 }, "45399": { "creation_time": 45399, "p": [ 24046.37109375, 18490.521484375, 37037.04296875 ], "wind_a": 0.0 }, "45400": { "creation_time": 45400, "p": [ 23980.169921875, 18523.837890625, 37037.04296875 ], "wind_a": 0.0 }, "45401": { "creation_time": 45401, "p": [ 23911.669921875, 18551.6015625, 37037.04296875 ], "wind_a": 0.0 }, "45402": { "creation_time": 45402, "p": [ 23840.87109375, 18573.8125, 37037.04296875 ], "wind_a": 0.0 }, "45403": { "creation_time": 45403, "p": [ 23770.0703125, 18596.0234375, 37037.04296875 ], "wind_a": 0.0 }, "45404": { "creation_time": 45404, "p": [ 23700.478515625, 18621.15234375, 37037.04296875 ], "wind_a": 0.0 }, "45405": { "creation_time": 45405, "p": [ 23629.2734375, 18642.3828125, 37037.04296875 ], "wind_a": 0.0 }, "45406": { "creation_time": 45406, "p": [ 23553.0703125, 18651.548828125, 37037.04296875 ], "wind_a": 0.0 }, "45407": { "creation_time": 45407, "p": [ 23475.37109375, 18657.1015625, 37037.04296875 ], "wind_a": 0.0 }, "45408": { "creation_time": 45408, "p": [ 23399.392578125, 18666.8125, 37037.04296875 ], "wind_a": 0.0 }, "45409": { "creation_time": 45409, "p": [ 23322.26953125, 18673.759765625, 37037.04296875 ], "wind_a": 0.0 }, "45410": { "creation_time": 45410, "p": [ 23246.87109375, 18684.865234375, 37037.04296875 ], "wind_a": 0.0 }, "45411": { "creation_time": 45411, "p": [ 23166.87109375, 18684.865234375, 37037.04296875 ], "wind_a": 0.0 }, "45412": { "creation_time": 45412, "p": [ 23086.921875, 18684.9921875, 37037.04296875 ], "wind_a": 0.0 }, "45413": { "creation_time": 45413, "p": [ 23009.169921875, 18690.41796875, 37037.04296875 ], "wind_a": 0.0 }, "45414": { "creation_time": 45414, "p": [ 22929.169921875, 18690.41796875, 37037.04296875 ], "wind_a": 0.0 }, "45415": { "creation_time": 45415, "p": [ 22853.76953125, 18679.3125, 37037.04296875 ], "wind_a": 0.0 }, "45416": { "creation_time": 45416, "p": [ 22779.330078125, 18665.888671875, 37037.04296875 ], "wind_a": 0.0 }, "45417": { "creation_time": 45417, "p": [ 22709.87109375, 18640.443359375, 37037.04296875 ], "wind_a": 0.0 }, "45418": { "creation_time": 45418, "p": [ 22641.37109375, 18612.6796875, 37037.04296875 ], "wind_a": 0.0 }, "45419": { "creation_time": 45419, "p": [ 22572.21875, 18586.48828125, 37037.04296875 ], "wind_a": 0.0 }, "45420": { "creation_time": 45420, "p": [ 22505.892578125, 18553.478515625, 37037.04296875 ], "wind_a": 0.0 }, "45421": { "creation_time": 45421, "p": [ 22441.19140625, 18516.54296875, 37037.04296875 ], "wind_a": 0.0 }, "45422": { "creation_time": 45422, "p": [ 22378.1171875, 18475.6796875, 37037.04296875 ], "wind_a": 0.0 }, "45423": { "creation_time": 45423, "p": [ 22342.986328125, 18457.205078125, 37037.04296875 ], "wind_a": 0.0 } } } } }, "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ], "vc3d_volume_shape_zyx": [ 18946, 8174, 8174 ] }, "format": "tifxyz", "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "lasagna_job": { "config": { "args": { "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "init-mode": "shell-dir-crop", "mesh-step": 50.0, "model-h": 5000.0, "model-init": "seed", "model-w": 5000.0, "model-w-unit": "voxels", "seed": [ 6084.10107421875, 4436.412109375, 9259.2607421875 ], "tifxyz-flow-gate-channels": true, "windings": 1 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "769": { "color": [ 0.6643162369728088, 0.39484161138534546, 0.48252543807029724 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap398", "points": { "45351": { "creation_time": 45351, "p": [ 5770.37353515625, 3866.075439453125, 9259.2607421875 ], "wind_a": 0.0 }, "45352": { "creation_time": 45352, "p": [ 5779.60791015625, 3882.25048828125, 9259.2607421875 ], "wind_a": 0.0 }, "45353": { "creation_time": 45353, "p": [ 5789.82373046875, 3898.01904296875, 9259.2607421875 ], "wind_a": 0.0 }, "45354": { "creation_time": 45354, "p": [ 5802.984375, 3912.567626953125, 9259.2607421875 ], "wind_a": 0.0 }, "45355": { "creation_time": 45355, "p": [ 5817.12646484375, 3926.709716796875, 9259.2607421875 ], "wind_a": 0.0 }, "45356": { "creation_time": 45356, "p": [ 5828.6767578125, 3941.92529296875, 9259.2607421875 ], "wind_a": 0.0 }, "45357": { "creation_time": 45357, "p": [ 5838.53955078125, 3957.84033203125, 9259.2607421875 ], "wind_a": 0.0 }, "45358": { "creation_time": 45358, "p": [ 5850.71875, 3972.79541015625, 9259.2607421875 ], "wind_a": 0.0 }, "45359": { "creation_time": 45359, "p": [ 5864.28564453125, 3986.362548828125, 9259.2607421875 ], "wind_a": 0.0 }, "45360": { "creation_time": 45360, "p": [ 5877.4462890625, 4000.911376953125, 9259.2607421875 ], "wind_a": 0.0 }, "45361": { "creation_time": 45361, "p": [ 5888.3681640625, 4016.38720703125, 9259.2607421875 ], "wind_a": 0.0 }, "45362": { "creation_time": 45362, "p": [ 5899.8408203125, 4031.63525390625, 9259.2607421875 ], "wind_a": 0.0 }, "45363": { "creation_time": 45363, "p": [ 5910.5791015625, 4046.3740234375, 9259.2607421875 ], "wind_a": 0.0 }, "45364": { "creation_time": 45364, "p": [ 5924.60546875, 4060.564208984375, 9259.2607421875 ], "wind_a": 0.0 }, "45365": { "creation_time": 45365, "p": [ 5939.154296875, 4073.724609375, 9259.2607421875 ], "wind_a": 0.0 }, "45366": { "creation_time": 45366, "p": [ 5953.29638671875, 4087.86669921875, 9259.2607421875 ], "wind_a": 0.0 }, "45367": { "creation_time": 45367, "p": [ 5967.8447265625, 4101.02734375, 9259.2607421875 ], "wind_a": 0.0 }, "45368": { "creation_time": 45368, "p": [ 5981.005859375, 4115.576171875, 9259.2607421875 ], "wind_a": 0.0 }, "45369": { "creation_time": 45369, "p": [ 5995.9609375, 4127.7548828125, 9259.2607421875 ], "wind_a": 0.0 }, "45370": { "creation_time": 45370, "p": [ 6012.54248046875, 4136.0078125, 9259.2607421875 ], "wind_a": 0.0 }, "45371": { "creation_time": 45371, "p": [ 6029.1240234375, 4144.26025390625, 9259.2607421875 ], "wind_a": 0.0 }, "45372": { "creation_time": 45372, "p": [ 6043.09765625, 4156.845703125, 9259.2607421875 ], "wind_a": 0.0 }, "45373": { "creation_time": 45373, "p": [ 6049.396484375, 4174.23681640625, 9259.2607421875 ], "wind_a": 0.0 }, "45374": { "creation_time": 45374, "p": [ 6053.7138671875, 4192.44873046875, 9259.2607421875 ], "wind_a": 0.0 }, "45375": { "creation_time": 45375, "p": [ 6059.11376953125, 4210.2119140625, 9259.2607421875 ], "wind_a": 0.0 }, "45376": { "creation_time": 45376, "p": [ 6060.501953125, 4229.63671875, 9259.2607421875 ], "wind_a": 0.0 }, "45377": { "creation_time": 45377, "p": [ 6057.7255859375, 4248.48681640625, 9259.2607421875 ], "wind_a": 0.0 }, "45378": { "creation_time": 45378, "p": [ 6056.33740234375, 4267.912109375, 9259.2607421875 ], "wind_a": 0.0 }, "45379": { "creation_time": 45379, "p": [ 6057.2001953125, 4287.5546875, 9259.2607421875 ], "wind_a": 0.0 }, "45380": { "creation_time": 45380, "p": [ 6060.501953125, 4306.1865234375, 9259.2607421875 ], "wind_a": 0.0 }, "45381": { "creation_time": 45381, "p": [ 6063.2783203125, 4325.037109375, 9259.2607421875 ], "wind_a": 0.0 }, "45382": { "creation_time": 45382, "p": [ 6066.0546875, 4343.88671875, 9259.2607421875 ], "wind_a": 0.0 }, "45383": { "creation_time": 45383, "p": [ 6068.8310546875, 4362.73681640625, 9259.2607421875 ], "wind_a": 0.0 }, "45384": { "creation_time": 45384, "p": [ 6071.607421875, 4381.5869140625, 9259.2607421875 ], "wind_a": 0.0 }, "45385": { "creation_time": 45385, "p": [ 6075.77197265625, 4399.86181640625, 9259.2607421875 ], "wind_a": 0.0 }, "45386": { "creation_time": 45386, "p": [ 6079.9365234375, 4418.13671875, 9259.2607421875 ], "wind_a": 0.0 }, "45387": { "creation_time": 45387, "p": [ 6084.10107421875, 4436.412109375, 9259.2607421875 ], "wind_a": 0.0 }, "45388": { "creation_time": 45388, "p": [ 6088.28369140625, 4454.67919921875, 9259.2607421875 ], "wind_a": 0.0 }, "45389": { "creation_time": 45389, "p": [ 6092.43017578125, 4472.9619140625, 9259.2607421875 ], "wind_a": 0.0 }, "45390": { "creation_time": 45390, "p": [ 6095.95458984375, 4491.501953125, 9259.2607421875 ], "wind_a": 0.0 }, "45391": { "creation_time": 45391, "p": [ 6099.29931640625, 4510.1162109375, 9259.2607421875 ], "wind_a": 0.0 }, "45392": { "creation_time": 45392, "p": [ 6099.37109375, 4528.9365234375, 9259.2607421875 ], "wind_a": 0.0 }, "45393": { "creation_time": 45393, "p": [ 6096.51123046875, 4547.751953125, 9259.2607421875 ], "wind_a": 0.0 }, "45394": { "creation_time": 45394, "p": [ 6085.4892578125, 4563.1865234375, 9259.2607421875 ], "wind_a": 0.0 }, "45395": { "creation_time": 45395, "p": [ 6073.134765625, 4578.0693359375, 9259.2607421875 ], "wind_a": 0.0 }, "45396": { "creation_time": 45396, "p": [ 6058.99267578125, 4592.2119140625, 9259.2607421875 ], "wind_a": 0.0 }, "45397": { "creation_time": 45397, "p": [ 6043.630859375, 4603.4091796875, 9259.2607421875 ], "wind_a": 0.0 }, "45398": { "creation_time": 45398, "p": [ 6027.8623046875, 4613.625, 9259.2607421875 ], "wind_a": 0.0 }, "45399": { "creation_time": 45399, "p": [ 6011.5927734375, 4622.63037109375, 9259.2607421875 ], "wind_a": 0.0 }, "45400": { "creation_time": 45400, "p": [ 5995.04248046875, 4630.95947265625, 9259.2607421875 ], "wind_a": 0.0 }, "45401": { "creation_time": 45401, "p": [ 5977.91748046875, 4637.900390625, 9259.2607421875 ], "wind_a": 0.0 }, "45402": { "creation_time": 45402, "p": [ 5960.2177734375, 4643.453125, 9259.2607421875 ], "wind_a": 0.0 }, "45403": { "creation_time": 45403, "p": [ 5942.517578125, 4649.005859375, 9259.2607421875 ], "wind_a": 0.0 }, "45404": { "creation_time": 45404, "p": [ 5925.11962890625, 4655.2880859375, 9259.2607421875 ], "wind_a": 0.0 }, "45405": { "creation_time": 45405, "p": [ 5907.318359375, 4660.595703125, 9259.2607421875 ], "wind_a": 0.0 }, "45406": { "creation_time": 45406, "p": [ 5888.267578125, 4662.88720703125, 9259.2607421875 ], "wind_a": 0.0 }, "45407": { "creation_time": 45407, "p": [ 5868.8427734375, 4664.275390625, 9259.2607421875 ], "wind_a": 0.0 }, "45408": { "creation_time": 45408, "p": [ 5849.84814453125, 4666.703125, 9259.2607421875 ], "wind_a": 0.0 }, "45409": { "creation_time": 45409, "p": [ 5830.5673828125, 4668.43994140625, 9259.2607421875 ], "wind_a": 0.0 }, "45410": { "creation_time": 45410, "p": [ 5811.7177734375, 4671.21630859375, 9259.2607421875 ], "wind_a": 0.0 }, "45411": { "creation_time": 45411, "p": [ 5791.7177734375, 4671.21630859375, 9259.2607421875 ], "wind_a": 0.0 }, "45412": { "creation_time": 45412, "p": [ 5771.73046875, 4671.248046875, 9259.2607421875 ], "wind_a": 0.0 }, "45413": { "creation_time": 45413, "p": [ 5752.29248046875, 4672.6044921875, 9259.2607421875 ], "wind_a": 0.0 }, "45414": { "creation_time": 45414, "p": [ 5732.29248046875, 4672.6044921875, 9259.2607421875 ], "wind_a": 0.0 }, "45415": { "creation_time": 45415, "p": [ 5713.4423828125, 4669.828125, 9259.2607421875 ], "wind_a": 0.0 }, "45416": { "creation_time": 45416, "p": [ 5694.83251953125, 4666.47216796875, 9259.2607421875 ], "wind_a": 0.0 }, "45417": { "creation_time": 45417, "p": [ 5677.4677734375, 4660.11083984375, 9259.2607421875 ], "wind_a": 0.0 }, "45418": { "creation_time": 45418, "p": [ 5660.3427734375, 4653.169921875, 9259.2607421875 ], "wind_a": 0.0 }, "45419": { "creation_time": 45419, "p": [ 5643.0546875, 4646.6220703125, 9259.2607421875 ], "wind_a": 0.0 }, "45420": { "creation_time": 45420, "p": [ 5626.47314453125, 4638.36962890625, 9259.2607421875 ], "wind_a": 0.0 }, "45421": { "creation_time": 45421, "p": [ 5610.2978515625, 4629.1357421875, 9259.2607421875 ], "wind_a": 0.0 }, "45422": { "creation_time": 45422, "p": [ 5594.529296875, 4618.919921875, 9259.2607421875 ], "wind_a": 0.0 }, "45423": { "creation_time": 45423, "p": [ 5585.74658203125, 4614.30126953125, 9259.2607421875 ], "wind_a": 0.0 } } } } }, "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ] }, "linked_surfaces": [], "model": null, "volume_shape_zyx": [ 18946, 8174, 8174 ] }, "model_source": "/tmp/fit_reopt_zkvzjszl/model_reopt.pt", "scale": [ 0.07999999821186066, 0.07999999821186066 ], "tags": { "date_last_modified": "20260614185644029", "reviewed": { "date": "20260604080934171" } }, "type": "seg", "uuid": "same_wrap000398_lasagna" }