{ "area_vx2": 842500.0, "base_shape_zyx": [ 18946, 8174, 8174 ], "bbox": [ [ 3980.99560546875, 3156.675048828125, 6276.5068359375 ], [ 4582.70751953125, 3719.001708984375, 7550.54443359375 ] ], "extra_channels": [ { "dtype": "float32", "file": "flow_gate_local_contrast.tif", "name": "flow_gate_local_contrast", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.local_contrast", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } }, { "dtype": "float32", "file": "flow_gate_component_normalized.tif", "name": "flow_gate_component_normalized", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.component_normalized", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } } ], "fit_config": { "_corr_point_roi_init_": { "effective_seed": [ 17076.93359375, 13727.1376953125, 27367.09375 ], "final_anchor_h": 149.46058610081673, "final_anchor_w": 24.61529842019081, "final_shell_id": "shell_0000.tifxyz", "final_trim_bottom": 28, "final_trim_top": 27, "init_margin_grid_points": 80, "initial_seed": [ 17076.93359375, 13727.1376953125, 27367.09375 ], "initial_shell_id": "shell_0000.tifxyz", "initial_skipped_point_count": 0, "initial_skipped_reasons": {}, "initial_trim_bottom": 28, "initial_trim_top": 27, "initial_usable_point_count": 51, "mode": "corr-point-roi", "model_h": 9223.883819580078, "model_w": 8200.078868865967, "model_w_unit": "voxels", "output_radius_grid_points": 20, "parsed_point_count": 51, "projected_h_span_grid": 24.477676391601563, "projected_h_span_vx": 1223.8838195800781, "projected_points": [ { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 14.814795127143125, "h": 134.6685791015625, "point_id": 16569, "row_index": 0, "w": 23.793907165527344 }, { "collection_id": 2809, "direction_sign": 1, "grid_distance_to_anchor": 6.985318467901244, "h": 142.4871063232422, "point_id": 16570, "row_index": 1, "w": 24.208784103393555 }, { "collection_id": 2809, "direction_sign": 1, "grid_distance_to_anchor": 7.776697041342539, "h": 141.70062255859375, "point_id": 16571, "row_index": 2, "w": 24.10541343688965 }, { "collection_id": 2809, "direction_sign": 1, "grid_distance_to_anchor": 7.2586858922588515, "h": 142.2281494140625, "point_id": 16572, "row_index": 3, "w": 23.99854850769043 }, { "collection_id": 2809, "direction_sign": 1, "grid_distance_to_anchor": 6.5198345520327035, "h": 142.97274780273438, "point_id": 16573, "row_index": 4, "w": 23.970165252685547 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 7.015785785128299, "h": 142.4840850830078, "point_id": 16574, "row_index": 5, "w": 23.873891830444336 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 6.748856593892277, "h": 142.75469970703125, "point_id": 16575, "row_index": 6, "w": 23.854934692382813 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 6.416968821440147, "h": 143.08827209472656, "point_id": 16576, "row_index": 7, "w": 23.85958480834961 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 5.919287068616946, "h": 143.58631896972656, "point_id": 16577, "row_index": 8, "w": 23.886638641357422 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 5.601980721357346, "h": 143.906005859375, "point_id": 16578, "row_index": 9, "w": 23.888093948364258 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 5.3274977651523825, "h": 144.18136596679688, "point_id": 16579, "row_index": 10, "w": 23.899709701538086 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 4.866017232293323, "h": 144.65264892578125, "point_id": 16580, "row_index": 11, "w": 23.86572265625 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 4.408932099920617, "h": 145.113525390625, "point_id": 16581, "row_index": 12, "w": 23.87926483154297 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 4.088348526991763, "h": 145.4288330078125, "point_id": 16582, "row_index": 13, "w": 23.937389373779297 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 3.718207514213461, "h": 145.7924346923828, "point_id": 16583, "row_index": 14, "w": 24.00724220275879 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 3.450061402754435, "h": 146.05404663085938, "point_id": 16584, "row_index": 15, "w": 24.069026947021484 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 3.250860087568808, "h": 146.2584228515625, "point_id": 16585, "row_index": 16, "w": 24.054725646972656 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 2.862484227355734, "h": 146.6566162109375, "point_id": 16586, "row_index": 17, "w": 24.039478302001953 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 2.354572010380612, "h": 147.17880249023438, "point_id": 16587, "row_index": 18, "w": 24.034374237060547 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 1.9732775320962541, "h": 147.57159423828125, "point_id": 16588, "row_index": 19, "w": 24.044742584228516 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 1.8884480272754536, "h": 147.62826538085938, "point_id": 16589, "row_index": 20, "w": 24.15831184387207 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 1.6105780599276704, "h": 147.88583374023438, "point_id": 16590, "row_index": 21, "w": 24.27748680114746 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 1.1514512451992163, "h": 148.32972717285156, "point_id": 16591, "row_index": 22, "w": 24.398508071899414 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 0.8074623956764927, "h": 148.66371154785156, "point_id": 16592, "row_index": 23, "w": 24.484966278076172 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 0.3118959518648794, "h": 149.15455627441406, "point_id": 16593, "row_index": 24, "w": 24.555091857910156 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 0.1252582024921541, "h": 149.58560180664063, "point_id": 16594, "row_index": 25, "w": 24.623088836669922 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 0.7990475416470879, "h": 150.25677490234375, "point_id": 16595, "row_index": 26, "w": 24.682828903198242 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 0.9337596041242407, "h": 150.3894805908203, "point_id": 16596, "row_index": 27, "w": 24.710493087768555 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 0.8806354051577899, "h": 150.32957458496094, "point_id": 16597, "row_index": 28, "w": 24.75804901123047 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 1.231698386706211, "h": 150.6626739501953, "point_id": 16598, "row_index": 29, "w": 24.88374900817871 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 1.689362636357732, "h": 151.09844970703125, "point_id": 16599, "row_index": 30, "w": 25.02924156188965 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 2.0634447486151934, "h": 151.4429473876953, "point_id": 16600, "row_index": 31, "w": 25.188053131103516 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 2.511277821114301, "h": 151.86660766601563, "point_id": 16601, "row_index": 32, "w": 25.334726333618164 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 3.016642329179646, "h": 152.35081481933594, "point_id": 16602, "row_index": 33, "w": 25.479421615600586 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 3.4698994648453665, "h": 152.7805633544922, "point_id": 16603, "row_index": 34, "w": 25.624235153198242 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 3.905609473986972, "h": 153.1851348876953, "point_id": 16604, "row_index": 35, "w": 25.790679931640625 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 4.484537959841828, "h": 153.74581909179688, "point_id": 16605, "row_index": 36, "w": 25.93736457824707 }, { "collection_id": 2809, "direction_sign": 1, "grid_distance_to_anchor": 5.183975683513494, "h": 154.4206085205078, "point_id": 16606, "row_index": 37, "w": 26.122541427612305 }, { "collection_id": 2809, "direction_sign": 1, "grid_distance_to_anchor": 5.880756225838843, "h": 155.08119201660156, "point_id": 16607, "row_index": 38, "w": 26.345062255859375 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 5.458449174332659, "h": 154.67149353027344, "point_id": 16608, "row_index": 39, "w": 26.240447998046875 }, { "collection_id": 2809, "direction_sign": 1, "grid_distance_to_anchor": 7.257872154204326, "h": 156.4956817626953, "point_id": 16609, "row_index": 40, "w": 26.39971351623535 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 5.90181788202691, "h": 155.13726806640625, "point_id": 16610, "row_index": 41, "w": 26.22983741760254 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 6.2185433122554485, "h": 155.42665100097656, "point_id": 16611, "row_index": 42, "w": 26.369251251220703 }, { "collection_id": 2809, "direction_sign": -1, "grid_distance_to_anchor": 6.851379962976213, "h": 156.0319366455078, "point_id": 16612, "row_index": 43, "w": 26.55405044555664 }, { "collection_id": 2809, "direction_sign": 1, "grid_distance_to_anchor": 9.132605045837677, "h": 158.25169372558594, "point_id": 16613, "row_index": 44, "w": 27.089344024658203 }, { "collection_id": 2809, "direction_sign": 1, "grid_distance_to_anchor": 8.840669892629041, "h": 157.9554443359375, "point_id": 16614, "row_index": 45, "w": 27.063732147216797 }, { "collection_id": 2809, "direction_sign": 1, "grid_distance_to_anchor": 9.495619375038391, "h": 158.57870483398438, "point_id": 16615, "row_index": 46, "w": 27.266090393066406 }, { "collection_id": 2809, "direction_sign": 1, "grid_distance_to_anchor": 10.106813348647735, "h": 159.14625549316406, "point_id": 16616, "row_index": 47, "w": 27.502422332763672 }, { "collection_id": 2809, "direction_sign": 1, "grid_distance_to_anchor": 10.042346549496482, "h": 159.05764770507813, "point_id": 16617, "row_index": 48, "w": 27.5725154876709 }, { "collection_id": 2809, "direction_sign": 1, "grid_distance_to_anchor": 9.654155713680078, "h": 158.62164306640625, "point_id": 16618, "row_index": 49, "w": 27.661239624023438 }, { "collection_id": 2809, "direction_sign": 1, "grid_distance_to_anchor": 10.0421279283778, "h": 158.98585510253906, "point_id": 16619, "row_index": 50, "w": 27.79548454284668 } ], "projected_w_span_grid": 4.001577377319336, "projected_w_span_vx": 200.0788688659668, "projection_mode": "normal-line", "skipped_point_count": 0, "skipped_points": [], "skipped_reasons": {}, "usable_point_count": 51, "windings": 1 }, "args": { "approval-inpaint": false, "approval-inpaint-corr-spacing": null, "approval-inpaint-output-mask": false, "approval-inpaint-output-mask-dilate": 3, "approval-inpaint-padding-frac": 0.25, "approval-inpaint-tifxyz": null, "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "crop": null, "cuda-gridsample": 1, "depth": 1, "device": "cuda", "downscale": 4.0, "erode-valid-mask": 0, "flatten-solver": "torch", "init-mode": "shell-dir-crop", "input": "/ephemeral/lasag_strip_outputs/.lasagna_point_strip_work/collection_2809/point_strip.lasagna.json", "mesh-h": 32, "mesh-step": 50, "mesh-w": 32, "model-h": 9223.883819580078, "model-init": "seed", "model-input": null, "model-output": "/tmp/fit_reopt_2abhg6c6/model_reopt.pt", "model-w": 8200.078868865967, "model-w-unit": "voxels", "normal-mask-zero": 0, "out-dir": null, "progress": true, "pyramid-d": false, "seed": [ 17076.93359375, 13727.1376953125, 27367.09375 ], "snapshot-interval": 1000, "sparse-prefetch-backend": "tensorstore", "subsample-mesh": 4, "subsample-winding": 4, "tifxyz-flow-gate-channels": true, "tifxyz-init": null, "winding-step": 25, "winding-volume": null, "windings": 1, "z-center": 0.0 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "2809": { "color": [ 0.0, 0.7450980544090271, 0.6274510025978088 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap446", "points": { "16569": { "creation_time": 16569, "p": [ 17301.46484375, 13479.947265625, 25524.41796875 ], "wind_a": 0.0 }, "16570": { "creation_time": 16570, "p": [ 17297.306640625, 13484.525390625, 25598.224609375 ], "wind_a": 0.0 }, "16571": { "creation_time": 16571, "p": [ 17298.3984375, 13483.3232421875, 25677.552734375 ], "wind_a": 0.0 }, "16572": { "creation_time": 16572, "p": [ 17303.54296875, 13477.6591796875, 25754.3828125 ], "wind_a": 0.0 }, "16573": { "creation_time": 16573, "p": [ 17309.78125, 13470.7919921875, 25830.541015625 ], "wind_a": 0.0 }, "16574": { "creation_time": 16574, "p": [ 17307.701171875, 13473.0810546875, 25909.259765625 ], "wind_a": 0.0 }, "16575": { "creation_time": 16575, "p": [ 17299.384765625, 13482.236328125, 25984.13671875 ], "wind_a": 0.0 }, "16576": { "creation_time": 16576, "p": [ 17289.755859375, 13492.8369140625, 26058.205078125 ], "wind_a": 0.0 }, "16577": { "creation_time": 16577, "p": [ 17280.673828125, 13502.8359375, 26132.609375 ], "wind_a": 0.0 }, "16578": { "creation_time": 16578, "p": [ 17272.359375, 13511.990234375, 26207.486328125 ], "wind_a": 0.0 }, "16579": { "creation_time": 16579, "p": [ 17259.884765625, 13525.7236328125, 26279.802734375 ], "wind_a": 0.0 }, "16580": { "creation_time": 16580, "p": [ 17247.41015625, 13539.4560546875, 26352.1171875 ], "wind_a": 0.0 }, "16581": { "creation_time": 16581, "p": [ 17241.173828125, 13546.322265625, 26428.275390625 ], "wind_a": 0.0 }, "16582": { "creation_time": 16582, "p": [ 17232.857421875, 13555.4775390625, 26503.15234375 ], "wind_a": 0.0 }, "16583": { "creation_time": 16583, "p": [ 17226.62109375, 13562.34375, 26579.310546875 ], "wind_a": 0.0 }, "16584": { "creation_time": 16584, "p": [ 17218.3046875, 13571.4990234375, 26654.1875 ], "wind_a": 0.0 }, "16585": { "creation_time": 16585, "p": [ 17205.830078125, 13585.232421875, 26726.501953125 ], "wind_a": 0.0 }, "16586": { "creation_time": 16586, "p": [ 17190.19140625, 13602.44921875, 26796.8671875 ], "wind_a": 0.0 }, "16587": { "creation_time": 16587, "p": [ 17180.8828125, 13612.697265625, 26871.1328125 ], "wind_a": 0.0 }, "16588": { "creation_time": 16588, "p": [ 17172.92578125, 13621.458984375, 26946.23046875 ], "wind_a": 0.0 }, "16589": { "creation_time": 16589, "p": [ 17160.09375, 13635.5859375, 27018.32421875 ], "wind_a": 0.0 }, "16590": { "creation_time": 16590, "p": [ 17143.4609375, 13653.8955078125, 27088.078125 ], "wind_a": 0.0 }, "16591": { "creation_time": 16591, "p": [ 17124.75, 13674.4951171875, 27156.552734375 ], "wind_a": 0.0 }, "16592": { "creation_time": 16592, "p": [ 17106.0390625, 13695.09375, 27225.025390625 ], "wind_a": 0.0 }, "16593": { "creation_time": 16593, "p": [ 17089.408203125, 13713.404296875, 27294.779296875 ], "wind_a": 0.0 }, "16594": { "creation_time": 16594, "p": [ 17076.93359375, 13727.1376953125, 27367.09375 ], "wind_a": 0.0 }, "16595": { "creation_time": 16595, "p": [ 17070.697265625, 13734.00390625, 27443.251953125 ], "wind_a": 0.0 }, "16596": { "creation_time": 16596, "p": [ 17062.380859375, 13743.1591796875, 27518.12890625 ], "wind_a": 0.0 }, "16597": { "creation_time": 16597, "p": [ 17043.771484375, 13763.6455078125, 27586.666015625 ], "wind_a": 0.0 }, "16598": { "creation_time": 16598, "p": [ 17023.37890625, 13786.09765625, 27654.1015625 ], "wind_a": 0.0 }, "16599": { "creation_time": 16599, "p": [ 17004.16796875, 13807.2451171875, 27722.267578125 ], "wind_a": 0.0 }, "16600": { "creation_time": 16600, "p": [ 16984.060546875, 13829.3828125, 27789.87890625 ], "wind_a": 0.0 }, "16601": { "creation_time": 16601, "p": [ 16966.60546875, 13848.5986328125, 27859.126953125 ], "wind_a": 0.0 }, "16602": { "creation_time": 16602, "p": [ 16947.681640625, 13869.431640625, 27927.46875 ], "wind_a": 0.0 }, "16603": { "creation_time": 16603, "p": [ 16933.482421875, 13885.0634765625, 27998.720703125 ], "wind_a": 0.0 }, "16604": { "creation_time": 16604, "p": [ 16925.16796875, 13894.21875, 28073.59765625 ], "wind_a": 0.0 }, "16605": { "creation_time": 16605, "p": [ 16918.9296875, 13901.0859375, 28149.755859375 ], "wind_a": 0.0 }, "16606": { "creation_time": 16606, "p": [ 16918.9296875, 13901.0859375, 28229.755859375 ], "wind_a": 0.0 }, "16607": { "creation_time": 16607, "p": [ 16925.16796875, 13894.21875, 28305.9140625 ], "wind_a": 0.0 }, "16608": { "creation_time": 16608, "p": [ 16923.087890625, 13896.5078125, 28382.072265625 ], "wind_a": 0.0 }, "16609": { "creation_time": 16609, "p": [ 16918.9296875, 13901.0859375, 28459.509765625 ], "wind_a": 0.0 }, "16610": { "creation_time": 16610, "p": [ 16912.693359375, 13907.9521484375, 28535.66796875 ], "wind_a": 0.0 }, "16611": { "creation_time": 16611, "p": [ 16895.43359375, 13926.953125, 28605.03515625 ], "wind_a": 0.0 }, "16612": { "creation_time": 16612, "p": [ 16879.44921875, 13944.5498046875, 28675.1875 ], "wind_a": 0.0 }, "16613": { "creation_time": 16613, "p": [ 16871.11328125, 13953.7275390625, 28750.052734375 ], "wind_a": 0.0 }, "16614": { "creation_time": 16614, "p": [ 16884.453125, 13939.041015625, 28821.833984375 ], "wind_a": 0.0 }, "16615": { "creation_time": 16615, "p": [ 16909.2578125, 13911.734375, 28886.552734375 ], "wind_a": 0.0 }, "16616": { "creation_time": 16616, "p": [ 16939.943359375, 13877.953125, 28947.650390625 ], "wind_a": 0.0 }, "16617": { "creation_time": 16617, "p": [ 16970.904296875, 13843.865234375, 29008.576171875 ], "wind_a": 0.0 }, "16618": { "creation_time": 16618, "p": [ 16983.669921875, 13829.8115234375, 29080.7109375 ], "wind_a": 0.0 }, "16619": { "creation_time": 16619, "p": [ 16993.7734375, 13818.6884765625, 29154.486328125 ], "wind_a": 0.0 } } } } }, "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ], "vc3d_volume_shape_zyx": [ 18946, 8174, 8174 ] }, "format": "tifxyz", "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "lasagna_job": { "config": { "args": { "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "init-mode": "shell-dir-crop", "mesh-step": 50.0, "model-h": 5000.0, "model-init": "seed", "model-w": 5000.0, "model-w-unit": "voxels", "seed": [ 4269.2333984375, 3431.784423828125, 6841.7734375 ], "tifxyz-flow-gate-channels": true, "windings": 1 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "2809": { "color": [ 0.0, 0.7450980544090271, 0.6274510025978088 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap446", "points": { "16569": { "creation_time": 16569, "p": [ 4325.3662109375, 3369.98681640625, 6381.1044921875 ], "wind_a": 0.0 }, "16570": { "creation_time": 16570, "p": [ 4324.32666015625, 3371.13134765625, 6399.55615234375 ], "wind_a": 0.0 }, "16571": { "creation_time": 16571, "p": [ 4324.599609375, 3370.830810546875, 6419.38818359375 ], "wind_a": 0.0 }, "16572": { "creation_time": 16572, "p": [ 4325.8857421875, 3369.414794921875, 6438.595703125 ], "wind_a": 0.0 }, "16573": { "creation_time": 16573, "p": [ 4327.4453125, 3367.697998046875, 6457.63525390625 ], "wind_a": 0.0 }, "16574": { "creation_time": 16574, "p": [ 4326.92529296875, 3368.270263671875, 6477.31494140625 ], "wind_a": 0.0 }, "16575": { "creation_time": 16575, "p": [ 4324.84619140625, 3370.55908203125, 6496.0341796875 ], "wind_a": 0.0 }, "16576": { "creation_time": 16576, "p": [ 4322.43896484375, 3373.209228515625, 6514.55126953125 ], "wind_a": 0.0 }, "16577": { "creation_time": 16577, "p": [ 4320.16845703125, 3375.708984375, 6533.15234375 ], "wind_a": 0.0 }, "16578": { "creation_time": 16578, "p": [ 4318.08984375, 3377.99755859375, 6551.87158203125 ], "wind_a": 0.0 }, "16579": { "creation_time": 16579, "p": [ 4314.97119140625, 3381.430908203125, 6569.95068359375 ], "wind_a": 0.0 }, "16580": { "creation_time": 16580, "p": [ 4311.8525390625, 3384.864013671875, 6588.029296875 ], "wind_a": 0.0 }, "16581": { "creation_time": 16581, "p": [ 4310.29345703125, 3386.58056640625, 6607.06884765625 ], "wind_a": 0.0 }, "16582": { "creation_time": 16582, "p": [ 4308.21435546875, 3388.869384765625, 6625.7880859375 ], "wind_a": 0.0 }, "16583": { "creation_time": 16583, "p": [ 4306.6552734375, 3390.5859375, 6644.82763671875 ], "wind_a": 0.0 }, "16584": { "creation_time": 16584, "p": [ 4304.576171875, 3392.874755859375, 6663.546875 ], "wind_a": 0.0 }, "16585": { "creation_time": 16585, "p": [ 4301.45751953125, 3396.30810546875, 6681.62548828125 ], "wind_a": 0.0 }, "16586": { "creation_time": 16586, "p": [ 4297.5478515625, 3400.6123046875, 6699.216796875 ], "wind_a": 0.0 }, "16587": { "creation_time": 16587, "p": [ 4295.220703125, 3403.17431640625, 6717.783203125 ], "wind_a": 0.0 }, "16588": { "creation_time": 16588, "p": [ 4293.2314453125, 3405.36474609375, 6736.5576171875 ], "wind_a": 0.0 }, "16589": { "creation_time": 16589, "p": [ 4290.0234375, 3408.896484375, 6754.5810546875 ], "wind_a": 0.0 }, "16590": { "creation_time": 16590, "p": [ 4285.865234375, 3413.473876953125, 6772.01953125 ], "wind_a": 0.0 }, "16591": { "creation_time": 16591, "p": [ 4281.1875, 3418.623779296875, 6789.13818359375 ], "wind_a": 0.0 }, "16592": { "creation_time": 16592, "p": [ 4276.509765625, 3423.7734375, 6806.25634765625 ], "wind_a": 0.0 }, "16593": { "creation_time": 16593, "p": [ 4272.35205078125, 3428.35107421875, 6823.69482421875 ], "wind_a": 0.0 }, "16594": { "creation_time": 16594, "p": [ 4269.2333984375, 3431.784423828125, 6841.7734375 ], "wind_a": 0.0 }, "16595": { "creation_time": 16595, "p": [ 4267.67431640625, 3433.5009765625, 6860.81298828125 ], "wind_a": 0.0 }, "16596": { "creation_time": 16596, "p": [ 4265.59521484375, 3435.789794921875, 6879.5322265625 ], "wind_a": 0.0 }, "16597": { "creation_time": 16597, "p": [ 4260.94287109375, 3440.911376953125, 6896.66650390625 ], "wind_a": 0.0 }, "16598": { "creation_time": 16598, "p": [ 4255.8447265625, 3446.5244140625, 6913.525390625 ], "wind_a": 0.0 }, "16599": { "creation_time": 16599, "p": [ 4251.0419921875, 3451.811279296875, 6930.56689453125 ], "wind_a": 0.0 }, "16600": { "creation_time": 16600, "p": [ 4246.01513671875, 3457.345703125, 6947.4697265625 ], "wind_a": 0.0 }, "16601": { "creation_time": 16601, "p": [ 4241.6513671875, 3462.149658203125, 6964.78173828125 ], "wind_a": 0.0 }, "16602": { "creation_time": 16602, "p": [ 4236.92041015625, 3467.35791015625, 6981.8671875 ], "wind_a": 0.0 }, "16603": { "creation_time": 16603, "p": [ 4233.37060546875, 3471.265869140625, 6999.68017578125 ], "wind_a": 0.0 }, "16604": { "creation_time": 16604, "p": [ 4231.2919921875, 3473.5546875, 7018.3994140625 ], "wind_a": 0.0 }, "16605": { "creation_time": 16605, "p": [ 4229.732421875, 3475.271484375, 7037.43896484375 ], "wind_a": 0.0 }, "16606": { "creation_time": 16606, "p": [ 4229.732421875, 3475.271484375, 7057.43896484375 ], "wind_a": 0.0 }, "16607": { "creation_time": 16607, "p": [ 4231.2919921875, 3473.5546875, 7076.478515625 ], "wind_a": 0.0 }, "16608": { "creation_time": 16608, "p": [ 4230.77197265625, 3474.126953125, 7095.51806640625 ], "wind_a": 0.0 }, "16609": { "creation_time": 16609, "p": [ 4229.732421875, 3475.271484375, 7114.87744140625 ], "wind_a": 0.0 }, "16610": { "creation_time": 16610, "p": [ 4228.17333984375, 3476.988037109375, 7133.9169921875 ], "wind_a": 0.0 }, "16611": { "creation_time": 16611, "p": [ 4223.8583984375, 3481.73828125, 7151.2587890625 ], "wind_a": 0.0 }, "16612": { "creation_time": 16612, "p": [ 4219.8623046875, 3486.137451171875, 7168.796875 ], "wind_a": 0.0 }, "16613": { "creation_time": 16613, "p": [ 4217.7783203125, 3488.431884765625, 7187.51318359375 ], "wind_a": 0.0 }, "16614": { "creation_time": 16614, "p": [ 4221.11328125, 3484.76025390625, 7205.45849609375 ], "wind_a": 0.0 }, "16615": { "creation_time": 16615, "p": [ 4227.314453125, 3477.93359375, 7221.63818359375 ], "wind_a": 0.0 }, "16616": { "creation_time": 16616, "p": [ 4234.98583984375, 3469.48828125, 7236.91259765625 ], "wind_a": 0.0 }, "16617": { "creation_time": 16617, "p": [ 4242.72607421875, 3460.96630859375, 7252.14404296875 ], "wind_a": 0.0 }, "16618": { "creation_time": 16618, "p": [ 4245.91748046875, 3457.452880859375, 7270.177734375 ], "wind_a": 0.0 }, "16619": { "creation_time": 16619, "p": [ 4248.443359375, 3454.672119140625, 7288.62158203125 ], "wind_a": 0.0 } } } } }, "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ] }, "linked_surfaces": [], "model": null, "volume_shape_zyx": [ 18946, 8174, 8174 ] }, "model_source": "/tmp/fit_reopt_2abhg6c6/model_reopt.pt", "scale": [ 0.07999999821186066, 0.07999999821186066 ], "tags": { "date_last_modified": "20260614185644062", "reviewed": { "date": "20260604080934177" } }, "type": "seg", "uuid": "same_wrap000446_lasagna" }