{ "area_vx2": 939843.75, "base_shape_zyx": [ 18946, 8174, 8174 ], "bbox": [ [ 4647.521484375, 2852.086181640625, 6423.02392578125 ], [ 5165.7314453125, 3424.151611328125, 8185.9482421875 ] ], "extra_channels": [ { "dtype": "float32", "file": "flow_gate_local_contrast.tif", "name": "flow_gate_local_contrast", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.local_contrast", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } }, { "dtype": "float32", "file": "flow_gate_component_normalized.tif", "name": "flow_gate_component_normalized", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.component_normalized", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } } ], "fit_config": { "_corr_point_roi_init_": { "effective_seed": [ 19931.873046875, 12249.603515625, 29094.076171875 ], "final_anchor_h": 165.68949446827173, "final_anchor_w": 9.072160579264164, "final_shell_id": "shell_0007.tifxyz", "final_trim_bottom": 21, "final_trim_top": 20, "init_margin_grid_points": 80, "initial_seed": [ 19946.33984375, 12233.81640625, 29165.20703125 ], "initial_shell_id": "shell_0007.tifxyz", "initial_skipped_point_count": 0, "initial_skipped_reasons": {}, "initial_trim_bottom": 21, "initial_trim_top": 20, "initial_usable_point_count": 70, "mode": "corr-point-roi", "model_h": 9241.830444335938, "model_w": 8071.448040008545, "model_w_unit": "voxels", "output_radius_grid_points": 20, "parsed_point_count": 70, "projected_h_span_grid": 24.83660888671875, "projected_h_span_vx": 1241.8304443359375, "projected_points": [ { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 10.673512098852308, "h": 155.02305603027344, "point_id": 22481, "row_index": 0, "w": 8.683635711669922 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 10.383052173113686, "h": 155.31231689453125, "point_id": 22482, "row_index": 1, "w": 8.722935676574707 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 10.536714300305634, "h": 155.16062927246094, "point_id": 22483, "row_index": 2, "w": 8.665533065795898 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 10.433136082564051, "h": 155.2652587890625, "point_id": 22484, "row_index": 3, "w": 8.641302108764648 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 10.345310075544438, "h": 155.35655212402344, "point_id": 22485, "row_index": 4, "w": 8.566450119018555 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 9.968485161735638, "h": 155.73348999023438, "point_id": 22486, "row_index": 5, "w": 8.573491096496582 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 9.933379930714493, "h": 155.76864624023438, "point_id": 22487, "row_index": 6, "w": 8.573354721069336 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 9.44325580606415, "h": 156.25625610351563, "point_id": 22488, "row_index": 7, "w": 8.637310981750488 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 8.661863122050672, "h": 157.0357666015625, "point_id": 22489, "row_index": 8, "w": 8.69683837890625 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 8.210415084716871, "h": 157.48338317871094, "point_id": 22490, "row_index": 9, "w": 8.806353569030762 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 7.888277973050482, "h": 157.80471801757813, "point_id": 22491, "row_index": 10, "w": 8.837150573730469 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 7.346500268393916, "h": 158.34719848632813, "point_id": 22492, "row_index": 11, "w": 8.823653221130371 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 6.719238186612989, "h": 158.97637939453125, "point_id": 22493, "row_index": 12, "w": 8.785371780395508 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 6.596206899576125, "h": 159.0998077392578, "point_id": 22494, "row_index": 13, "w": 8.778946876525879 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 6.530089027326589, "h": 159.16587829589844, "point_id": 22495, "row_index": 14, "w": 8.78148078918457 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 6.127104999440269, "h": 159.57095336914063, "point_id": 22496, "row_index": 15, "w": 8.748323440551758 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 5.732812071800406, "h": 159.96310424804688, "point_id": 22497, "row_index": 16, "w": 8.800887107849121 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 5.55779878854252, "h": 160.14022827148438, "point_id": 22498, "row_index": 17, "w": 8.764309883117676 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 5.255295670452699, "h": 160.4449005126953, "point_id": 22499, "row_index": 18, "w": 8.73694896697998 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 4.37610442703733, "h": 161.32000732421875, "point_id": 22500, "row_index": 19, "w": 8.831594467163086 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 3.780491166174752, "h": 161.91195678710938, "point_id": 22501, "row_index": 20, "w": 8.92275333404541 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 3.449188330403895, "h": 162.24356079101563, "point_id": 22502, "row_index": 21, "w": 8.922356605529785 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 3.250011082024556, "h": 162.448486328125, "point_id": 22503, "row_index": 22, "w": 8.83042049407959 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 3.1444025109132037, "h": 162.5663299560547, "point_id": 22504, "row_index": 23, "w": 8.707317352294922 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 3.0941341223934673, "h": 162.62762451171875, "point_id": 22505, "row_index": 24, "w": 8.626494407653809 }, { "collection_id": 2258, "direction_sign": -1, "grid_distance_to_anchor": 3.1253780983180595, "h": 162.5974884033203, "point_id": 22506, "row_index": 25, "w": 8.616653442382813 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 0.13947385868616208, "h": 165.79029846191406, "point_id": 22507, "row_index": 26, "w": 8.975768089294434 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 1.513154910948861, "h": 164.23208618164063, "point_id": 22508, "row_index": 27, "w": 8.66522216796875 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 1.1398243127009526, "h": 164.67108154296875, "point_id": 22509, "row_index": 28, "w": 8.560267448425293 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 0.9145430889315848, "h": 164.9727020263672, "point_id": 22510, "row_index": 29, "w": 8.504183769226074 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 0.6763561595769705, "h": 165.35377502441406, "point_id": 22511, "row_index": 30, "w": 8.485006332397461 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 0.6576802150003015, "h": 165.7279815673828, "point_id": 22512, "row_index": 31, "w": 8.415607452392578 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 0.7235873191206462, "h": 165.98492431640625, "point_id": 22513, "row_index": 32, "w": 8.411630630493164 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 0.807186042755745, "h": 166.32650756835938, "point_id": 22514, "row_index": 33, "w": 8.576415061950684 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 1.498828320574868, "h": 167.13580322265625, "point_id": 22515, "row_index": 34, "w": 8.67887020111084 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 1.9491459775398408, "h": 167.62429809570313, "point_id": 22516, "row_index": 35, "w": 8.836141586303711 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 2.1144487541163564, "h": 167.80392456054688, "point_id": 22517, "row_index": 36, "w": 9.08104419708252 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 2.263447006529717, "h": 167.94967651367188, "point_id": 22518, "row_index": 37, "w": 9.193690299987793 }, { "collection_id": 2258, "direction_sign": -1, "grid_distance_to_anchor": 1.5484741022025992, "h": 167.23793029785156, "point_id": 22519, "row_index": 38, "w": 9.061273574829102 }, { "collection_id": 2258, "direction_sign": -1, "grid_distance_to_anchor": 1.739960667546994, "h": 167.42306518554688, "point_id": 22520, "row_index": 39, "w": 9.221142768859863 }, { "collection_id": 2258, "direction_sign": -1, "grid_distance_to_anchor": 2.5856992014211677, "h": 168.26736450195313, "point_id": 22521, "row_index": 40, "w": 9.273223876953125 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 3.0752854300973507, "h": 168.76095581054688, "point_id": 22522, "row_index": 41, "w": 9.225476264953613 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 3.861969948717375, "h": 169.54751586914063, "point_id": 22523, "row_index": 42, "w": 9.246753692626953 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 4.377451393757891, "h": 170.0606231689453, "point_id": 22524, "row_index": 43, "w": 9.307351112365723 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 4.231752866562314, "h": 169.9174041748047, "point_id": 22525, "row_index": 44, "w": 9.252470970153809 }, { "collection_id": 2258, "direction_sign": -1, "grid_distance_to_anchor": 4.33067583246608, "h": 170.01406860351563, "point_id": 22526, "row_index": 45, "w": 9.301968574523926 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 5.312296823389687, "h": 170.97833251953125, "point_id": 22527, "row_index": 46, "w": 9.57084846496582 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 6.11010898171156, "h": 171.75994873046875, "point_id": 22528, "row_index": 47, "w": 9.767154693603516 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 6.419173737880639, "h": 172.07373046875, "point_id": 22529, "row_index": 48, "w": 9.740982055664063 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 6.8769943049249065, "h": 172.53521728515625, "point_id": 22530, "row_index": 49, "w": 9.727240562438965 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 7.09444449555865, "h": 172.75772094726563, "point_id": 22531, "row_index": 50, "w": 9.6815185546875 }, { "collection_id": 2258, "direction_sign": -1, "grid_distance_to_anchor": 6.487773568258624, "h": 172.1550750732422, "point_id": 22532, "row_index": 51, "w": 9.608325958251953 }, { "collection_id": 2258, "direction_sign": -1, "grid_distance_to_anchor": 6.7506570551864495, "h": 172.4062042236328, "point_id": 22533, "row_index": 52, "w": 9.748311996459961 }, { "collection_id": 2258, "direction_sign": -1, "grid_distance_to_anchor": 7.356881166398069, "h": 173.00613403320313, "point_id": 22534, "row_index": 53, "w": 9.840591430664063 }, { "collection_id": 2258, "direction_sign": -1, "grid_distance_to_anchor": 5.58919468484354, "h": 160.1013641357422, "point_id": 22535, "row_index": 54, "w": 8.963088989257813 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 10.340346018974884, "h": 176.01937866210938, "point_id": 22536, "row_index": 55, "w": 9.537185668945313 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 9.483116520286828, "h": 175.16952514648438, "point_id": 22537, "row_index": 56, "w": 9.314064025878906 }, { "collection_id": 2258, "direction_sign": -1, "grid_distance_to_anchor": 8.88363340862864, "h": 174.57135009765625, "point_id": 22538, "row_index": 57, "w": 9.249876976013184 }, { "collection_id": 2258, "direction_sign": -1, "grid_distance_to_anchor": 8.723893795794844, "h": 174.413330078125, "point_id": 22539, "row_index": 58, "w": 9.104022979736328 }, { "collection_id": 2258, "direction_sign": -1, "grid_distance_to_anchor": 8.774455481627317, "h": 174.4639434814453, "point_id": 22540, "row_index": 59, "w": 9.061506271362305 }, { "collection_id": 2258, "direction_sign": -1, "grid_distance_to_anchor": 9.130563013346402, "h": 174.81988525390625, "point_id": 22541, "row_index": 60, "w": 9.016079902648926 }, { "collection_id": 2258, "direction_sign": -1, "grid_distance_to_anchor": 9.511177426868377, "h": 175.20066833496094, "point_id": 22542, "row_index": 61, "w": 9.080389976501465 }, { "collection_id": 2258, "direction_sign": -1, "grid_distance_to_anchor": 10.057139672010145, "h": 175.74526977539063, "point_id": 22543, "row_index": 62, "w": 9.237814903259277 }, { "collection_id": 2258, "direction_sign": -1, "grid_distance_to_anchor": 10.892385717714035, "h": 176.58056640625, "point_id": 22544, "row_index": 63, "w": 9.241331100463867 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 12.443630009858971, "h": 178.13076782226563, "point_id": 22545, "row_index": 64, "w": 9.31432819366455 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 14.174666883539011, "h": 179.8596649169922, "point_id": 22546, "row_index": 65, "w": 9.429162979125977 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 14.046626470434338, "h": 179.72958374023438, "point_id": 22547, "row_index": 66, "w": 9.500656127929688 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 13.686641717146243, "h": 179.37290954589844, "point_id": 22548, "row_index": 67, "w": 9.369336128234863 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 13.425391198274667, "h": 179.1139678955078, "point_id": 22549, "row_index": 68, "w": 9.229138374328613 }, { "collection_id": 2258, "direction_sign": 1, "grid_distance_to_anchor": 13.439916785151794, "h": 179.1284942626953, "point_id": 22550, "row_index": 69, "w": 9.229156494140625 } ], "projected_w_span_grid": 1.4289608001708984, "projected_w_span_vx": 71.44804000854492, "projection_mode": "normal-line", "skipped_point_count": 0, "skipped_points": [], "skipped_reasons": {}, "usable_point_count": 70, "windings": 1 }, "args": { "approval-inpaint": false, "approval-inpaint-corr-spacing": null, "approval-inpaint-output-mask": false, "approval-inpaint-output-mask-dilate": 3, "approval-inpaint-padding-frac": 0.25, "approval-inpaint-tifxyz": null, "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "crop": null, "cuda-gridsample": 1, "depth": 1, "device": "cuda", "downscale": 4.0, "erode-valid-mask": 0, "flatten-solver": "torch", "init-mode": "shell-dir-crop", "input": "/ephemeral/lasag_strip_outputs/.lasagna_point_strip_work/collection_2258/point_strip.lasagna.json", "mesh-h": 32, "mesh-step": 50, "mesh-w": 32, "model-h": 9241.830444335938, "model-init": "seed", "model-input": null, "model-output": "/tmp/fit_reopt_h7ka15s3/model_reopt.pt", "model-w": 8071.448040008545, "model-w-unit": "voxels", "normal-mask-zero": 0, "out-dir": null, "progress": true, "pyramid-d": false, "seed": [ 19931.873046875, 12249.603515625, 29094.076171875 ], "snapshot-interval": 1000, "sparse-prefetch-backend": "tensorstore", "subsample-mesh": 4, "subsample-winding": 4, "tifxyz-flow-gate-channels": true, "tifxyz-init": null, "winding-step": 25, "winding-volume": null, "windings": 1, "z-center": 0.0 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "2258": { "color": [ 0.0, 0.47058823704719543, 1.0 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap777", "points": { "22481": { "creation_time": 22481, "p": [ 19552.2578125, 12663.8818359375, 26690.607421875 ], "wind_a": 0.0 }, "22482": { "creation_time": 22482, "p": [ 19576.94921875, 12636.9375, 26755.46875 ], "wind_a": 0.0 }, "22483": { "creation_time": 22483, "p": [ 19598.138671875, 12613.8115234375, 26822.4765625 ], "wind_a": 0.0 }, "22484": { "creation_time": 22484, "p": [ 19613.984375, 12596.51953125, 26892.76171875 ], "wind_a": 0.0 }, "22485": { "creation_time": 22485, "p": [ 19623.2421875, 12586.4150390625, 26967.0859375 ], "wind_a": 0.0 }, "22486": { "creation_time": 22486, "p": [ 19626.330078125, 12583.046875, 27045.193359375 ], "wind_a": 0.0 }, "22487": { "creation_time": 22487, "p": [ 19632.501953125, 12576.3115234375, 27121.41015625 ], "wind_a": 0.0 }, "22488": { "creation_time": 22488, "p": [ 19638.673828125, 12569.5751953125, 27197.625 ], "wind_a": 0.0 }, "22489": { "creation_time": 22489, "p": [ 19644.84765625, 12562.8388671875, 27273.83984375 ], "wind_a": 0.0 }, "22490": { "creation_time": 22490, "p": [ 19657.19140625, 12549.3662109375, 27346.271484375 ], "wind_a": 0.0 }, "22491": { "creation_time": 22491, "p": [ 19670.365234375, 12534.9912109375, 27418.1953125 ], "wind_a": 0.0 }, "22492": { "creation_time": 22492, "p": [ 19684.96875, 12519.052734375, 27489.240234375 ], "wind_a": 0.0 }, "22493": { "creation_time": 22493, "p": [ 19703.15234375, 12499.2099609375, 27558.091796875 ], "wind_a": 0.0 }, "22494": { "creation_time": 22494, "p": [ 19717.36328125, 12483.7001953125, 27629.37890625 ], "wind_a": 0.0 }, "22495": { "creation_time": 22495, "p": [ 19728.177734375, 12471.8994140625, 27702.75 ], "wind_a": 0.0 }, "22496": { "creation_time": 22496, "p": [ 19737.435546875, 12461.794921875, 27777.072265625 ], "wind_a": 0.0 }, "22497": { "creation_time": 22497, "p": [ 19746.6953125, 12451.6904296875, 27851.396484375 ], "wind_a": 0.0 }, "22498": { "creation_time": 22498, "p": [ 19752.8671875, 12444.9541015625, 27927.611328125 ], "wind_a": 0.0 }, "22499": { "creation_time": 22499, "p": [ 19759.041015625, 12438.2177734375, 28003.826171875 ], "wind_a": 0.0 }, "22500": { "creation_time": 22500, "p": [ 19771.384765625, 12424.7451171875, 28076.2578125 ], "wind_a": 0.0 }, "22501": { "creation_time": 22501, "p": [ 19788.470703125, 12406.0986328125, 28145.78125 ], "wind_a": 0.0 }, "22502": { "creation_time": 22502, "p": [ 19805.333984375, 12387.6962890625, 28215.443359375 ], "wind_a": 0.0 }, "22503": { "creation_time": 22503, "p": [ 19823.44140625, 12367.9365234375, 28284.341796875 ], "wind_a": 0.0 }, "22504": { "creation_time": 22504, "p": [ 19836.197265625, 12354.0146484375, 28356.51953125 ], "wind_a": 0.0 }, "22505": { "creation_time": 22505, "p": [ 19842.37109375, 12347.2783203125, 28432.736328125 ], "wind_a": 0.0 }, "22506": { "creation_time": 22506, "p": [ 19845.45703125, 12343.91015625, 28510.84375 ], "wind_a": 0.0 }, "22507": { "creation_time": 22507, "p": [ 19842.37109375, 12347.2783203125, 28588.951171875 ], "wind_a": 0.0 }, "22508": { "creation_time": 22508, "p": [ 19845.45703125, 12343.91015625, 28667.05859375 ], "wind_a": 0.0 }, "22509": { "creation_time": 22509, "p": [ 19860.888671875, 12327.0693359375, 28737.59765625 ], "wind_a": 0.0 }, "22510": { "creation_time": 22510, "p": [ 19876.3203125, 12310.2294921875, 28808.13671875 ], "wind_a": 0.0 }, "22511": { "creation_time": 22511, "p": [ 19891.67578125, 12293.4697265625, 28878.720703125 ], "wind_a": 0.0 }, "22512": { "creation_time": 22512, "p": [ 19905.888671875, 12277.9609375, 28950.0078125 ], "wind_a": 0.0 }, "22513": { "creation_time": 22513, "p": [ 19916.44140625, 12266.443359375, 29023.537109375 ], "wind_a": 0.0 }, "22514": { "creation_time": 22514, "p": [ 19931.873046875, 12249.603515625, 29094.076171875 ], "wind_a": 0.0 }, "22515": { "creation_time": 22515, "p": [ 19946.33984375, 12233.81640625, 29165.20703125 ], "wind_a": 0.0 }, "22516": { "creation_time": 22516, "p": [ 19964.916015625, 12213.5439453125, 29233.81640625 ], "wind_a": 0.0 }, "22517": { "creation_time": 22517, "p": [ 19984.33984375, 12192.3447265625, 29301.90625 ], "wind_a": 0.0 }, "22518": { "creation_time": 22518, "p": [ 19996.685546875, 12178.8720703125, 29374.337890625 ], "wind_a": 0.0 }, "22519": { "creation_time": 22519, "p": [ 20002.857421875, 12172.13671875, 29450.5546875 ], "wind_a": 0.0 }, "22520": { "creation_time": 22520, "p": [ 19996.685546875, 12178.8720703125, 29526.76953125 ], "wind_a": 0.0 }, "22521": { "creation_time": 22521, "p": [ 19993.599609375, 12182.240234375, 29604.876953125 ], "wind_a": 0.0 }, "22522": { "creation_time": 22522, "p": [ 19990.513671875, 12185.6083984375, 29682.984375 ], "wind_a": 0.0 }, "22523": { "creation_time": 22523, "p": [ 19993.599609375, 12182.240234375, 29761.091796875 ], "wind_a": 0.0 }, "22524": { "creation_time": 22524, "p": [ 19999.35546875, 12175.9580078125, 29837.5625 ], "wind_a": 0.0 }, "22525": { "creation_time": 22525, "p": [ 20005.943359375, 12168.7685546875, 29913.5234375 ], "wind_a": 0.0 }, "22526": { "creation_time": 22526, "p": [ 20005.943359375, 12168.7685546875, 29993.5234375 ], "wind_a": 0.0 }, "22527": { "creation_time": 22527, "p": [ 20005.943359375, 12168.7685546875, 30073.5234375 ], "wind_a": 0.0 }, "22528": { "creation_time": 22528, "p": [ 20012.1171875, 12162.0322265625, 30149.73828125 ], "wind_a": 0.0 }, "22529": { "creation_time": 22529, "p": [ 20021.375, 12151.927734375, 30224.0625 ], "wind_a": 0.0 }, "22530": { "creation_time": 22530, "p": [ 20030.634765625, 12141.8232421875, 30298.384765625 ], "wind_a": 0.0 }, "22531": { "creation_time": 22531, "p": [ 20039.89453125, 12131.71875, 30372.708984375 ], "wind_a": 0.0 }, "22532": { "creation_time": 22532, "p": [ 20039.89453125, 12131.71875, 30448.923828125 ], "wind_a": 0.0 }, "22533": { "creation_time": 22533, "p": [ 20027.548828125, 12145.19140625, 30521.35546875 ], "wind_a": 0.0 }, "22534": { "creation_time": 22534, "p": [ 20021.375, 12151.927734375, 30597.5703125 ], "wind_a": 0.0 }, "22535": { "creation_time": 22535, "p": [ 20021.375, 12151.927734375, 30677.5703125 ], "wind_a": 0.0 }, "22536": { "creation_time": 22536, "p": [ 20032.841796875, 12139.4140625, 30750.541015625 ], "wind_a": 0.0 }, "22537": { "creation_time": 22537, "p": [ 20042.98046875, 12128.3505859375, 30824.32421875 ], "wind_a": 0.0 }, "22538": { "creation_time": 22538, "p": [ 20049.15234375, 12121.6142578125, 30900.541015625 ], "wind_a": 0.0 }, "22539": { "creation_time": 22539, "p": [ 20040.287109375, 12131.2890625, 30975.10546875 ], "wind_a": 0.0 }, "22540": { "creation_time": 22540, "p": [ 20024.462890625, 12148.5595703125, 31045.40234375 ], "wind_a": 0.0 }, "22541": { "creation_time": 22541, "p": [ 20003.13671875, 12171.8330078125, 31112.326171875 ], "wind_a": 0.0 }, "22542": { "creation_time": 22542, "p": [ 19981.25390625, 12195.712890625, 31178.91015625 ], "wind_a": 0.0 }, "22543": { "creation_time": 22543, "p": [ 19962.736328125, 12215.921875, 31247.556640625 ], "wind_a": 0.0 }, "22544": { "creation_time": 22544, "p": [ 19947.3046875, 12232.7626953125, 31318.095703125 ], "wind_a": 0.0 }, "22545": { "creation_time": 22545, "p": [ 19947.3046875, 12232.7626953125, 31394.310546875 ], "wind_a": 0.0 }, "22546": { "creation_time": 22546, "p": [ 19960.72265625, 12218.1201171875, 31466.083984375 ], "wind_a": 0.0 }, "22547": { "creation_time": 22547, "p": [ 19981.25390625, 12195.712890625, 31533.49609375 ], "wind_a": 0.0 }, "22548": { "creation_time": 22548, "p": [ 19997.873046875, 12177.576171875, 31603.306640625 ], "wind_a": 0.0 }, "22549": { "creation_time": 22549, "p": [ 20009.03125, 12165.400390625, 31676.466796875 ], "wind_a": 0.0 }, "22550": { "creation_time": 22550, "p": [ 20009.03125, 12165.400390625, 31679.208984375 ], "wind_a": 0.0 } } } } }, "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ], "vc3d_volume_shape_zyx": [ 18946, 8174, 8174 ] }, "format": "tifxyz", "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "lasagna_job": { "config": { "args": { "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "init-mode": "shell-dir-crop", "mesh-step": 50.0, "model-h": 5000.0, "model-init": "seed", "model-w": 5000.0, "model-w-unit": "voxels", "seed": [ 4991.22900390625, 3053.385986328125, 7308.4541015625 ], "tifxyz-flow-gate-channels": true, "windings": 1 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "2258": { "color": [ 0.0, 0.47058823704719543, 1.0 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap777", "points": { "22481": { "creation_time": 22481, "p": [ 4888.064453125, 3165.970458984375, 6672.65185546875 ], "wind_a": 0.0 }, "22482": { "creation_time": 22482, "p": [ 4894.2373046875, 3159.234375, 6688.8671875 ], "wind_a": 0.0 }, "22483": { "creation_time": 22483, "p": [ 4899.53466796875, 3153.452880859375, 6705.619140625 ], "wind_a": 0.0 }, "22484": { "creation_time": 22484, "p": [ 4903.49609375, 3149.1298828125, 6723.1904296875 ], "wind_a": 0.0 }, "22485": { "creation_time": 22485, "p": [ 4905.810546875, 3146.603759765625, 6741.771484375 ], "wind_a": 0.0 }, "22486": { "creation_time": 22486, "p": [ 4906.58251953125, 3145.76171875, 6761.29833984375 ], "wind_a": 0.0 }, "22487": { "creation_time": 22487, "p": [ 4908.12548828125, 3144.077880859375, 6780.3525390625 ], "wind_a": 0.0 }, "22488": { "creation_time": 22488, "p": [ 4909.66845703125, 3142.393798828125, 6799.40625 ], "wind_a": 0.0 }, "22489": { "creation_time": 22489, "p": [ 4911.2119140625, 3140.709716796875, 6818.4599609375 ], "wind_a": 0.0 }, "22490": { "creation_time": 22490, "p": [ 4914.2978515625, 3137.341552734375, 6836.56787109375 ], "wind_a": 0.0 }, "22491": { "creation_time": 22491, "p": [ 4917.59130859375, 3133.747802734375, 6854.548828125 ], "wind_a": 0.0 }, "22492": { "creation_time": 22492, "p": [ 4921.2421875, 3129.76318359375, 6872.31005859375 ], "wind_a": 0.0 }, "22493": { "creation_time": 22493, "p": [ 4925.7880859375, 3124.802490234375, 6889.52294921875 ], "wind_a": 0.0 }, "22494": { "creation_time": 22494, "p": [ 4929.3408203125, 3120.925048828125, 6907.3447265625 ], "wind_a": 0.0 }, "22495": { "creation_time": 22495, "p": [ 4932.04443359375, 3117.974853515625, 6925.6875 ], "wind_a": 0.0 }, "22496": { "creation_time": 22496, "p": [ 4934.35888671875, 3115.44873046875, 6944.26806640625 ], "wind_a": 0.0 }, "22497": { "creation_time": 22497, "p": [ 4936.673828125, 3112.922607421875, 6962.84912109375 ], "wind_a": 0.0 }, "22498": { "creation_time": 22498, "p": [ 4938.216796875, 3111.238525390625, 6981.90283203125 ], "wind_a": 0.0 }, "22499": { "creation_time": 22499, "p": [ 4939.76025390625, 3109.554443359375, 7000.95654296875 ], "wind_a": 0.0 }, "22500": { "creation_time": 22500, "p": [ 4942.84619140625, 3106.186279296875, 7019.064453125 ], "wind_a": 0.0 }, "22501": { "creation_time": 22501, "p": [ 4947.11767578125, 3101.524658203125, 7036.4453125 ], "wind_a": 0.0 }, "22502": { "creation_time": 22502, "p": [ 4951.33349609375, 3096.924072265625, 7053.86083984375 ], "wind_a": 0.0 }, "22503": { "creation_time": 22503, "p": [ 4955.8603515625, 3091.984130859375, 7071.08544921875 ], "wind_a": 0.0 }, "22504": { "creation_time": 22504, "p": [ 4959.04931640625, 3088.503662109375, 7089.1298828125 ], "wind_a": 0.0 }, "22505": { "creation_time": 22505, "p": [ 4960.5927734375, 3086.819580078125, 7108.18408203125 ], "wind_a": 0.0 }, "22506": { "creation_time": 22506, "p": [ 4961.3642578125, 3085.9775390625, 7127.7109375 ], "wind_a": 0.0 }, "22507": { "creation_time": 22507, "p": [ 4960.5927734375, 3086.819580078125, 7147.23779296875 ], "wind_a": 0.0 }, "22508": { "creation_time": 22508, "p": [ 4961.3642578125, 3085.9775390625, 7166.7646484375 ], "wind_a": 0.0 }, "22509": { "creation_time": 22509, "p": [ 4965.22216796875, 3081.767333984375, 7184.3994140625 ], "wind_a": 0.0 }, "22510": { "creation_time": 22510, "p": [ 4969.080078125, 3077.557373046875, 7202.0341796875 ], "wind_a": 0.0 }, "22511": { "creation_time": 22511, "p": [ 4972.9189453125, 3073.367431640625, 7219.68017578125 ], "wind_a": 0.0 }, "22512": { "creation_time": 22512, "p": [ 4976.47216796875, 3069.490234375, 7237.501953125 ], "wind_a": 0.0 }, "22513": { "creation_time": 22513, "p": [ 4979.1103515625, 3066.61083984375, 7255.88427734375 ], "wind_a": 0.0 }, "22514": { "creation_time": 22514, "p": [ 4982.96826171875, 3062.40087890625, 7273.51904296875 ], "wind_a": 0.0 }, "22515": { "creation_time": 22515, "p": [ 4986.5849609375, 3058.4541015625, 7291.3017578125 ], "wind_a": 0.0 }, "22516": { "creation_time": 22516, "p": [ 4991.22900390625, 3053.385986328125, 7308.4541015625 ], "wind_a": 0.0 }, "22517": { "creation_time": 22517, "p": [ 4996.0849609375, 3048.086181640625, 7325.4765625 ], "wind_a": 0.0 }, "22518": { "creation_time": 22518, "p": [ 4999.17138671875, 3044.718017578125, 7343.58447265625 ], "wind_a": 0.0 }, "22519": { "creation_time": 22519, "p": [ 5000.71435546875, 3043.0341796875, 7362.638671875 ], "wind_a": 0.0 }, "22520": { "creation_time": 22520, "p": [ 4999.17138671875, 3044.718017578125, 7381.6923828125 ], "wind_a": 0.0 }, "22521": { "creation_time": 22521, "p": [ 4998.39990234375, 3045.56005859375, 7401.21923828125 ], "wind_a": 0.0 }, "22522": { "creation_time": 22522, "p": [ 4997.62841796875, 3046.402099609375, 7420.74609375 ], "wind_a": 0.0 }, "22523": { "creation_time": 22523, "p": [ 4998.39990234375, 3045.56005859375, 7440.27294921875 ], "wind_a": 0.0 }, "22524": { "creation_time": 22524, "p": [ 4999.8388671875, 3043.989501953125, 7459.390625 ], "wind_a": 0.0 }, "22525": { "creation_time": 22525, "p": [ 5001.48583984375, 3042.192138671875, 7478.380859375 ], "wind_a": 0.0 }, "22526": { "creation_time": 22526, "p": [ 5001.48583984375, 3042.192138671875, 7498.380859375 ], "wind_a": 0.0 }, "22527": { "creation_time": 22527, "p": [ 5001.48583984375, 3042.192138671875, 7518.380859375 ], "wind_a": 0.0 }, "22528": { "creation_time": 22528, "p": [ 5003.029296875, 3040.508056640625, 7537.4345703125 ], "wind_a": 0.0 }, "22529": { "creation_time": 22529, "p": [ 5005.34375, 3037.98193359375, 7556.015625 ], "wind_a": 0.0 }, "22530": { "creation_time": 22530, "p": [ 5007.65869140625, 3035.455810546875, 7574.59619140625 ], "wind_a": 0.0 }, "22531": { "creation_time": 22531, "p": [ 5009.9736328125, 3032.9296875, 7593.17724609375 ], "wind_a": 0.0 }, "22532": { "creation_time": 22532, "p": [ 5009.9736328125, 3032.9296875, 7612.23095703125 ], "wind_a": 0.0 }, "22533": { "creation_time": 22533, "p": [ 5006.88720703125, 3036.2978515625, 7630.3388671875 ], "wind_a": 0.0 }, "22534": { "creation_time": 22534, "p": [ 5005.34375, 3037.98193359375, 7649.392578125 ], "wind_a": 0.0 }, "22535": { "creation_time": 22535, "p": [ 5005.34375, 3037.98193359375, 7669.392578125 ], "wind_a": 0.0 }, "22536": { "creation_time": 22536, "p": [ 5008.21044921875, 3034.853515625, 7687.63525390625 ], "wind_a": 0.0 }, "22537": { "creation_time": 22537, "p": [ 5010.7451171875, 3032.087646484375, 7706.0810546875 ], "wind_a": 0.0 }, "22538": { "creation_time": 22538, "p": [ 5012.2880859375, 3030.403564453125, 7725.13525390625 ], "wind_a": 0.0 }, "22539": { "creation_time": 22539, "p": [ 5010.07177734375, 3032.822265625, 7743.7763671875 ], "wind_a": 0.0 }, "22540": { "creation_time": 22540, "p": [ 5006.11572265625, 3037.139892578125, 7761.3505859375 ], "wind_a": 0.0 }, "22541": { "creation_time": 22541, "p": [ 5000.7841796875, 3042.958251953125, 7778.08154296875 ], "wind_a": 0.0 }, "22542": { "creation_time": 22542, "p": [ 4995.3134765625, 3048.92822265625, 7794.7275390625 ], "wind_a": 0.0 }, "22543": { "creation_time": 22543, "p": [ 4990.68408203125, 3053.98046875, 7811.88916015625 ], "wind_a": 0.0 }, "22544": { "creation_time": 22544, "p": [ 4986.826171875, 3058.190673828125, 7829.52392578125 ], "wind_a": 0.0 }, "22545": { "creation_time": 22545, "p": [ 4986.826171875, 3058.190673828125, 7848.57763671875 ], "wind_a": 0.0 }, "22546": { "creation_time": 22546, "p": [ 4990.1806640625, 3054.530029296875, 7866.52099609375 ], "wind_a": 0.0 }, "22547": { "creation_time": 22547, "p": [ 4995.3134765625, 3048.92822265625, 7883.3740234375 ], "wind_a": 0.0 }, "22548": { "creation_time": 22548, "p": [ 4999.46826171875, 3044.39404296875, 7900.82666015625 ], "wind_a": 0.0 }, "22549": { "creation_time": 22549, "p": [ 5002.2578125, 3041.35009765625, 7919.11669921875 ], "wind_a": 0.0 }, "22550": { "creation_time": 22550, "p": [ 5002.2578125, 3041.35009765625, 7919.80224609375 ], "wind_a": 0.0 } } } } }, "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ] }, "linked_surfaces": [], "model": null, "volume_shape_zyx": [ 18946, 8174, 8174 ] }, "model_source": "/tmp/fit_reopt_h7ka15s3/model_reopt.pt", "scale": [ 0.07999999821186066, 0.07999999821186066 ], "tags": { "date_last_modified": "20260614185644194", "reviewed": { "date": "20260604080934202" } }, "type": "seg", "uuid": "same_wrap000777_lasagna" }