{ "area_vx2": 851250.0, "base_shape_zyx": [ 18946, 8174, 8174 ], "bbox": [ [ 4680.96484375, 2829.197021484375, 6536.0458984375 ], [ 5180.96923828125, 3319.40576171875, 8163.1982421875 ] ], "extra_channels": [ { "dtype": "float32", "file": "flow_gate_local_contrast.tif", "name": "flow_gate_local_contrast", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.local_contrast", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } }, { "dtype": "float32", "file": "flow_gate_component_normalized.tif", "name": "flow_gate_component_normalized", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.component_normalized", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } } ], "fit_config": { "_corr_point_roi_init_": { "effective_seed": [ 20094.36328125, 12072.2744140625, 29371.509765625 ], "final_anchor_h": 167.87735775113106, "final_anchor_w": 9.453443139791489, "final_shell_id": "shell_0007.tifxyz", "final_trim_bottom": 21, "final_trim_top": 20, "init_margin_grid_points": 80, "initial_seed": [ 20085.1328125, 12082.349609375, 29297.169921875 ], "initial_shell_id": "shell_0007.tifxyz", "initial_skipped_point_count": 0, "initial_skipped_reasons": {}, "initial_trim_bottom": 21, "initial_trim_top": 20, "initial_usable_point_count": 62, "mode": "corr-point-roi", "model_h": 9182.000732421875, "model_w": 8075.041627883911, "model_w_unit": "voxels", "output_radius_grid_points": 20, "parsed_point_count": 62, "projected_h_span_grid": 23.6400146484375, "projected_h_span_vx": 1182.000732421875, "projected_points": [ { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 11.847968230720584, "h": 156.06195068359375, "point_id": 22661, "row_index": 0, "w": 8.575657844543457 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 11.462504507897687, "h": 156.44650268554688, "point_id": 22662, "row_index": 1, "w": 8.6022310256958 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 10.921552839629712, "h": 156.98031616210938, "point_id": 22663, "row_index": 2, "w": 8.722142219543457 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 10.30181401659162, "h": 157.599609375, "point_id": 22664, "row_index": 3, "w": 8.749695777893066 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 9.65440664310997, "h": 158.249267578125, "point_id": 22665, "row_index": 4, "w": 8.741089820861816 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 9.36644302142227, "h": 158.54345703125, "point_id": 22666, "row_index": 5, "w": 8.673345565795898 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 9.099711081998947, "h": 158.8072509765625, "point_id": 22667, "row_index": 6, "w": 8.720023155212402 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 8.928049338493677, "h": 158.97740173339844, "point_id": 22668, "row_index": 7, "w": 8.745737075805664 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 8.339880613863638, "h": 159.56300354003906, "point_id": 22669, "row_index": 8, "w": 8.80142879486084 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 7.994815508102327, "h": 159.91334533691406, "point_id": 22670, "row_index": 9, "w": 8.752314567565918 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 7.5304673956359505, "h": 160.3839569091797, "point_id": 22671, "row_index": 10, "w": 8.707197189331055 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 7.194294743343684, "h": 160.7390594482422, "point_id": 22672, "row_index": 11, "w": 8.557578086853027 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 7.043533712526107, "h": 160.8930206298828, "point_id": 22673, "row_index": 12, "w": 8.542179107666016 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 6.561145386983417, "h": 161.38209533691406, "point_id": 22674, "row_index": 13, "w": 8.525976181030273 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 6.304058830126675, "h": 161.63430786132813, "point_id": 22675, "row_index": 14, "w": 8.578522682189941 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 6.281927976870243, "h": 161.6648712158203, "point_id": 22676, "row_index": 15, "w": 8.521976470947266 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 6.197243658742963, "h": 161.7588653564453, "point_id": 22677, "row_index": 16, "w": 8.468618392944336 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 5.793979611621575, "h": 162.16043090820313, "point_id": 22678, "row_index": 17, "w": 8.511664390563965 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 5.35920450042628, "h": 162.6207733154297, "point_id": 22679, "row_index": 18, "w": 8.409703254699707 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 4.933975732199172, "h": 163.05845642089844, "point_id": 22680, "row_index": 19, "w": 8.39405345916748 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 4.524416629655624, "h": 163.4987030029297, "point_id": 22681, "row_index": 20, "w": 8.314264297485352 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 3.973723598364992, "h": 164.06654357910156, "point_id": 22682, "row_index": 21, "w": 8.327310562133789 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 3.6232456403506883, "h": 164.445068359375, "point_id": 22683, "row_index": 22, "w": 8.29271125793457 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 3.096698575203462, "h": 164.99581909179688, "point_id": 22684, "row_index": 23, "w": 8.31930160522461 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 2.5255796455813178, "h": 165.6200408935547, "point_id": 22685, "row_index": 24, "w": 8.320714950561523 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 1.646896565078236, "h": 166.6578369140625, "point_id": 22686, "row_index": 25, "w": 8.34662914276123 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 2.0608929911358804, "h": 166.10858154296875, "point_id": 22687, "row_index": 26, "w": 8.395751953125 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 1.9296382432601034, "h": 166.2705841064453, "point_id": 22688, "row_index": 27, "w": 8.38490104675293 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 1.3387547925446386, "h": 166.86981201171875, "point_id": 22689, "row_index": 28, "w": 8.571901321411133 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 0.6262847391568597, "h": 167.82908630371094, "point_id": 22690, "row_index": 29, "w": 8.829021453857422 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 0.49665125836782065, "h": 168.11392211914063, "point_id": 22691, "row_index": 30, "w": 9.016751289367676 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 0.5085919919463108, "h": 167.6305694580078, "point_id": 22692, "row_index": 31, "w": 9.008739471435547 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 0.3791052338290789, "h": 167.8875274658203, "point_id": 22693, "row_index": 32, "w": 9.074474334716797 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 0.5755701481296179, "h": 168.41197204589844, "point_id": 22694, "row_index": 33, "w": 9.240209579467773 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 0.9734934340748691, "h": 168.84959411621094, "point_id": 22695, "row_index": 34, "w": 9.403986930847168 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 0.8792041688660452, "h": 168.7394561767578, "point_id": 22696, "row_index": 35, "w": 9.280856132507324 }, { "collection_id": 347, "direction_sign": -1, "grid_distance_to_anchor": 1.293314194480829, "h": 169.12339782714844, "point_id": 22697, "row_index": 36, "w": 9.106966972351074 }, { "collection_id": 347, "direction_sign": -1, "grid_distance_to_anchor": 2.7945326963490187, "h": 165.15049743652344, "point_id": 22698, "row_index": 37, "w": 8.842177391052246 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 2.0663888915752655, "h": 169.91384887695313, "point_id": 22699, "row_index": 38, "w": 9.103204727172852 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 2.7239878068138816, "h": 170.60009765625, "point_id": 22700, "row_index": 39, "w": 9.370999336242676 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 3.1617032760441526, "h": 171.03863525390625, "point_id": 22701, "row_index": 40, "w": 9.505329132080078 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 3.560307131410354, "h": 171.43577575683594, "point_id": 22702, "row_index": 41, "w": 9.569409370422363 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 4.770337881526047, "h": 172.64505004882813, "point_id": 22703, "row_index": 42, "w": 9.61229419708252 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 5.559508201285504, "h": 173.4269256591797, "point_id": 22704, "row_index": 43, "w": 9.785749435424805 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 5.481165298984359, "h": 173.34796142578125, "point_id": 22705, "row_index": 44, "w": 9.793543815612793 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 5.380917983497694, "h": 173.25340270996094, "point_id": 22706, "row_index": 45, "w": 9.682394981384277 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 5.756691350094931, "h": 173.63143920898438, "point_id": 22707, "row_index": 46, "w": 9.626769065856934 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 5.7568747042987365, "h": 173.63351440429688, "point_id": 22708, "row_index": 47, "w": 9.544365882873535 }, { "collection_id": 347, "direction_sign": -1, "grid_distance_to_anchor": 5.552645407579723, "h": 173.4287872314453, "point_id": 22709, "row_index": 48, "w": 9.569640159606934 }, { "collection_id": 347, "direction_sign": -1, "grid_distance_to_anchor": 5.391002197061963, "h": 173.26748657226563, "point_id": 22710, "row_index": 49, "w": 9.356407165527344 }, { "collection_id": 347, "direction_sign": -1, "grid_distance_to_anchor": 6.154090574185313, "h": 174.0285186767578, "point_id": 22711, "row_index": 50, "w": 9.263574600219727 }, { "collection_id": 347, "direction_sign": -1, "grid_distance_to_anchor": 6.339697365689137, "h": 174.20436096191406, "point_id": 22712, "row_index": 51, "w": 9.05245304107666 }, { "collection_id": 347, "direction_sign": -1, "grid_distance_to_anchor": 6.92614324574756, "h": 174.7860107421875, "point_id": 22713, "row_index": 52, "w": 8.96153450012207 }, { "collection_id": 347, "direction_sign": -1, "grid_distance_to_anchor": 6.7984457704512975, "h": 174.6431884765625, "point_id": 22714, "row_index": 53, "w": 8.788311958312988 }, { "collection_id": 347, "direction_sign": -1, "grid_distance_to_anchor": 5.93582152468754, "h": 173.7583770751953, "point_id": 22715, "row_index": 54, "w": 8.648714065551758 }, { "collection_id": 347, "direction_sign": -1, "grid_distance_to_anchor": 6.783458097788097, "h": 174.594970703125, "point_id": 22716, "row_index": 55, "w": 8.51058578491211 }, { "collection_id": 347, "direction_sign": -1, "grid_distance_to_anchor": 7.42570083027717, "h": 175.24163818359375, "point_id": 22717, "row_index": 56, "w": 8.50033950805664 }, { "collection_id": 347, "direction_sign": -1, "grid_distance_to_anchor": 9.09739202516515, "h": 176.93161010742188, "point_id": 22718, "row_index": 57, "w": 8.568538665771484 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 10.21412719160041, "h": 178.0719451904297, "point_id": 22719, "row_index": 58, "w": 8.821951866149902 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 11.698776258782958, "h": 179.5697784423828, "point_id": 22720, "row_index": 59, "w": 9.067873001098633 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 11.837697287948666, "h": 179.70196533203125, "point_id": 22721, "row_index": 60, "w": 8.896906852722168 }, { "collection_id": 347, "direction_sign": 1, "grid_distance_to_anchor": 11.476038881432657, "h": 179.33311462402344, "point_id": 22722, "row_index": 61, "w": 8.771458625793457 } ], "projected_w_span_grid": 1.5008325576782227, "projected_w_span_vx": 75.04162788391113, "projection_mode": "normal-line", "skipped_point_count": 0, "skipped_points": [], "skipped_reasons": {}, "usable_point_count": 62, "windings": 1 }, "args": { "approval-inpaint": false, "approval-inpaint-corr-spacing": null, "approval-inpaint-output-mask": false, "approval-inpaint-output-mask-dilate": 3, "approval-inpaint-padding-frac": 0.25, "approval-inpaint-tifxyz": null, "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "crop": null, "cuda-gridsample": 1, "depth": 1, "device": "cuda", "downscale": 4.0, "erode-valid-mask": 0, "flatten-solver": "torch", "init-mode": "shell-dir-crop", "input": "/ephemeral/lasag_strip_outputs/.lasagna_point_strip_work/collection_347/point_strip.lasagna.json", "mesh-h": 32, "mesh-step": 50, "mesh-w": 32, "model-h": 9182.000732421875, "model-init": "seed", "model-input": null, "model-output": "/tmp/fit_reopt_1naaqgow/model_reopt.pt", "model-w": 8075.041627883911, "model-w-unit": "voxels", "normal-mask-zero": 0, "out-dir": null, "progress": true, "pyramid-d": false, "seed": [ 20094.36328125, 12072.2744140625, 29371.509765625 ], "snapshot-interval": 1000, "sparse-prefetch-backend": "tensorstore", "subsample-mesh": 4, "subsample-winding": 4, "tifxyz-flow-gate-channels": true, "tifxyz-init": null, "winding-step": 25, "winding-volume": null, "windings": 1, "z-center": 0.0 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "347": { "color": [ 1.0, 0.6274510025978088, 0.8627451062202454 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap780", "points": { "22661": { "creation_time": 22661, "p": [ 19752.984375, 12444.826171875, 27100.814453125 ], "wind_a": 0.0 }, "22662": { "creation_time": 22662, "p": [ 19760.48828125, 12436.638671875, 27176.21484375 ], "wind_a": 0.0 }, "22663": { "creation_time": 22663, "p": [ 19767.990234375, 12428.4501953125, 27251.61328125 ], "wind_a": 0.0 }, "22664": { "creation_time": 22664, "p": [ 19775.494140625, 12420.2626953125, 27327.013671875 ], "wind_a": 0.0 }, "22665": { "creation_time": 22665, "p": [ 19790.498046875, 12403.88671875, 27397.8125 ], "wind_a": 0.0 }, "22666": { "creation_time": 22666, "p": [ 19805.50390625, 12387.5107421875, 27468.61328125 ], "wind_a": 0.0 }, "22667": { "creation_time": 22667, "p": [ 19820.509765625, 12371.134765625, 27539.4140625 ], "wind_a": 0.0 }, "22668": { "creation_time": 22668, "p": [ 19832.166015625, 12358.4150390625, 27612.267578125 ], "wind_a": 0.0 }, "22669": { "creation_time": 22669, "p": [ 19846.76953125, 12342.4775390625, 27683.3125 ], "wind_a": 0.0 }, "22670": { "creation_time": 22670, "p": [ 19861.775390625, 12326.1005859375, 27754.11328125 ], "wind_a": 0.0 }, "22671": { "creation_time": 22671, "p": [ 19876.78125, 12309.7255859375, 27824.912109375 ], "wind_a": 0.0 }, "22672": { "creation_time": 22672, "p": [ 19892.19140625, 12292.908203125, 27895.46484375 ], "wind_a": 0.0 }, "22673": { "creation_time": 22673, "p": [ 19906.79296875, 12276.9736328125, 27966.51171875 ], "wind_a": 0.0 }, "22674": { "creation_time": 22674, "p": [ 19921.798828125, 12260.59765625, 28037.3125 ], "wind_a": 0.0 }, "22675": { "creation_time": 22675, "p": [ 19933.052734375, 12248.3154296875, 28110.412109375 ], "wind_a": 0.0 }, "22676": { "creation_time": 22676, "p": [ 19941.60546875, 12238.9814453125, 28185.16796875 ], "wind_a": 0.0 }, "22677": { "creation_time": 22677, "p": [ 19948.05859375, 12231.939453125, 28261.2109375 ], "wind_a": 0.0 }, "22678": { "creation_time": 22678, "p": [ 19948.05859375, 12231.939453125, 28341.2109375 ], "wind_a": 0.0 }, "22679": { "creation_time": 22679, "p": [ 19948.05859375, 12231.939453125, 28421.2109375 ], "wind_a": 0.0 }, "22680": { "creation_time": 22680, "p": [ 19951.810546875, 12227.845703125, 28498.912109375 ], "wind_a": 0.0 }, "22681": { "creation_time": 22681, "p": [ 19954.962890625, 12224.404296875, 28576.978515625 ], "wind_a": 0.0 }, "22682": { "creation_time": 22682, "p": [ 19956.04296875, 12223.2255859375, 28656.31640625 ], "wind_a": 0.0 }, "22683": { "creation_time": 22683, "p": [ 19966.814453125, 12211.4697265625, 28729.7109375 ], "wind_a": 0.0 }, "22684": { "creation_time": 22684, "p": [ 19981.8203125, 12195.09375, 28800.51171875 ], "wind_a": 0.0 }, "22685": { "creation_time": 22685, "p": [ 19996.826171875, 12178.7177734375, 28871.310546875 ], "wind_a": 0.0 }, "22686": { "creation_time": 22686, "p": [ 20013.416015625, 12160.6142578125, 28941.138671875 ], "wind_a": 0.0 }, "22687": { "creation_time": 22687, "p": [ 20030.58984375, 12141.8720703125, 29010.609375 ], "wind_a": 0.0 }, "22688": { "creation_time": 22688, "p": [ 20045.595703125, 12125.49609375, 29081.41015625 ], "wind_a": 0.0 }, "22689": { "creation_time": 22689, "p": [ 20056.849609375, 12113.21484375, 29154.509765625 ], "wind_a": 0.0 }, "22690": { "creation_time": 22690, "p": [ 20070.7890625, 12098.001953125, 29225.962890625 ], "wind_a": 0.0 }, "22691": { "creation_time": 22691, "p": [ 20085.1328125, 12082.349609375, 29297.169921875 ], "wind_a": 0.0 }, "22692": { "creation_time": 22692, "p": [ 20094.36328125, 12072.2744140625, 29371.509765625 ], "wind_a": 0.0 }, "22693": { "creation_time": 22693, "p": [ 20101.8671875, 12064.0869140625, 29446.91015625 ], "wind_a": 0.0 }, "22694": { "creation_time": 22694, "p": [ 20105.6171875, 12059.9931640625, 29524.609375 ], "wind_a": 0.0 }, "22695": { "creation_time": 22695, "p": [ 20113.12109375, 12051.8046875, 29600.009765625 ], "wind_a": 0.0 }, "22696": { "creation_time": 22696, "p": [ 20116.873046875, 12047.7109375, 29677.708984375 ], "wind_a": 0.0 }, "22697": { "creation_time": 22697, "p": [ 20116.873046875, 12047.7109375, 29757.708984375 ], "wind_a": 0.0 }, "22698": { "creation_time": 22698, "p": [ 20113.12109375, 12051.8046875, 29835.408203125 ], "wind_a": 0.0 }, "22699": { "creation_time": 22699, "p": [ 20113.12109375, 12051.8046875, 29915.41015625 ], "wind_a": 0.0 }, "22700": { "creation_time": 22700, "p": [ 20113.12109375, 12051.8046875, 29995.41015625 ], "wind_a": 0.0 }, "22701": { "creation_time": 22701, "p": [ 20116.873046875, 12047.7109375, 30073.109375 ], "wind_a": 0.0 }, "22702": { "creation_time": 22702, "p": [ 20120.623046875, 12043.6171875, 30150.80859375 ], "wind_a": 0.0 }, "22703": { "creation_time": 22703, "p": [ 20130.37890625, 12032.9716796875, 30224.828125 ], "wind_a": 0.0 }, "22704": { "creation_time": 22704, "p": [ 20146.8828125, 12014.958984375, 30294.708984375 ], "wind_a": 0.0 }, "22705": { "creation_time": 22705, "p": [ 20164.369140625, 11995.8759765625, 30363.98828125 ], "wind_a": 0.0 }, "22706": { "creation_time": 22706, "p": [ 20176.060546875, 11983.1181640625, 30436.8203125 ], "wind_a": 0.0 }, "22707": { "creation_time": 22707, "p": [ 20188.1484375, 11969.92578125, 30509.408203125 ], "wind_a": 0.0 }, "22708": { "creation_time": 22708, "p": [ 20191.900390625, 11965.83203125, 30587.107421875 ], "wind_a": 0.0 }, "22709": { "creation_time": 22709, "p": [ 20191.900390625, 11965.83203125, 30662.5078125 ], "wind_a": 0.0 }, "22710": { "creation_time": 22710, "p": [ 20181.744140625, 11976.9150390625, 30736.28125 ], "wind_a": 0.0 }, "22711": { "creation_time": 22711, "p": [ 20173.142578125, 11986.3017578125, 30811.0078125 ], "wind_a": 0.0 }, "22712": { "creation_time": 22712, "p": [ 20166.322265625, 11993.74609375, 30886.82421875 ], "wind_a": 0.0 }, "22713": { "creation_time": 22713, "p": [ 20161.888671875, 11998.5830078125, 30964.107421875 ], "wind_a": 0.0 }, "22714": { "creation_time": 22714, "p": [ 20148.24609375, 12013.47265625, 31035.7421875 ], "wind_a": 0.0 }, "22715": { "creation_time": 22715, "p": [ 20125.9453125, 12037.8095703125, 31102.0703125 ], "wind_a": 0.0 }, "22716": { "creation_time": 22716, "p": [ 20101.8671875, 12064.0869140625, 31167.306640625 ], "wind_a": 0.0 }, "22717": { "creation_time": 22717, "p": [ 20083.994140625, 12083.58984375, 31236.349609375 ], "wind_a": 0.0 }, "22718": { "creation_time": 22718, "p": [ 20071.85546875, 12096.8388671875, 31308.90625 ], "wind_a": 0.0 }, "22719": { "creation_time": 22719, "p": [ 20075.607421875, 12092.7451171875, 31386.60546875 ], "wind_a": 0.0 }, "22720": { "creation_time": 22720, "p": [ 20092.134765625, 12074.7080078125, 31456.47265625 ], "wind_a": 0.0 }, "22721": { "creation_time": 22721, "p": [ 20109.369140625, 12055.8994140625, 31525.90625 ], "wind_a": 0.0 }, "22722": { "creation_time": 22722, "p": [ 20116.873046875, 12047.7109375, 31565.27734375 ], "wind_a": 0.0 } } } } }, "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ], "vc3d_volume_shape_zyx": [ 18946, 8174, 8174 ] }, "format": "tifxyz", "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "lasagna_job": { "config": { "args": { "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "init-mode": "shell-dir-crop", "mesh-step": 50.0, "model-h": 5000.0, "model-init": "seed", "model-w": 5000.0, "model-w-unit": "voxels", "seed": [ 5023.5908203125, 3018.068603515625, 7342.87744140625 ], "tifxyz-flow-gate-channels": true, "windings": 1 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "347": { "color": [ 1.0, 0.6274510025978088, 0.8627451062202454 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap780", "points": { "22661": { "creation_time": 22661, "p": [ 4938.24609375, 3111.20654296875, 6775.20361328125 ], "wind_a": 0.0 }, "22662": { "creation_time": 22662, "p": [ 4940.1220703125, 3109.15966796875, 6794.0537109375 ], "wind_a": 0.0 }, "22663": { "creation_time": 22663, "p": [ 4941.99755859375, 3107.112548828125, 6812.9033203125 ], "wind_a": 0.0 }, "22664": { "creation_time": 22664, "p": [ 4943.87353515625, 3105.065673828125, 6831.75341796875 ], "wind_a": 0.0 }, "22665": { "creation_time": 22665, "p": [ 4947.62451171875, 3100.9716796875, 6849.453125 ], "wind_a": 0.0 }, "22666": { "creation_time": 22666, "p": [ 4951.3759765625, 3096.877685546875, 6867.1533203125 ], "wind_a": 0.0 }, "22667": { "creation_time": 22667, "p": [ 4955.12744140625, 3092.78369140625, 6884.853515625 ], "wind_a": 0.0 }, "22668": { "creation_time": 22668, "p": [ 4958.04150390625, 3089.603759765625, 6903.06689453125 ], "wind_a": 0.0 }, "22669": { "creation_time": 22669, "p": [ 4961.6923828125, 3085.619384765625, 6920.828125 ], "wind_a": 0.0 }, "22670": { "creation_time": 22670, "p": [ 4965.44384765625, 3081.525146484375, 6938.5283203125 ], "wind_a": 0.0 }, "22671": { "creation_time": 22671, "p": [ 4969.1953125, 3077.431396484375, 6956.22802734375 ], "wind_a": 0.0 }, "22672": { "creation_time": 22672, "p": [ 4973.0478515625, 3073.22705078125, 6973.8662109375 ], "wind_a": 0.0 }, "22673": { "creation_time": 22673, "p": [ 4976.6982421875, 3069.243408203125, 6991.6279296875 ], "wind_a": 0.0 }, "22674": { "creation_time": 22674, "p": [ 4980.44970703125, 3065.1494140625, 7009.328125 ], "wind_a": 0.0 }, "22675": { "creation_time": 22675, "p": [ 4983.26318359375, 3062.078857421875, 7027.60302734375 ], "wind_a": 0.0 }, "22676": { "creation_time": 22676, "p": [ 4985.4013671875, 3059.745361328125, 7046.2919921875 ], "wind_a": 0.0 }, "22677": { "creation_time": 22677, "p": [ 4987.0146484375, 3057.98486328125, 7065.302734375 ], "wind_a": 0.0 }, "22678": { "creation_time": 22678, "p": [ 4987.0146484375, 3057.98486328125, 7085.302734375 ], "wind_a": 0.0 }, "22679": { "creation_time": 22679, "p": [ 4987.0146484375, 3057.98486328125, 7105.302734375 ], "wind_a": 0.0 }, "22680": { "creation_time": 22680, "p": [ 4987.95263671875, 3056.96142578125, 7124.72802734375 ], "wind_a": 0.0 }, "22681": { "creation_time": 22681, "p": [ 4988.74072265625, 3056.10107421875, 7144.24462890625 ], "wind_a": 0.0 }, "22682": { "creation_time": 22682, "p": [ 4989.0107421875, 3055.806396484375, 7164.0791015625 ], "wind_a": 0.0 }, "22683": { "creation_time": 22683, "p": [ 4991.70361328125, 3052.867431640625, 7182.427734375 ], "wind_a": 0.0 }, "22684": { "creation_time": 22684, "p": [ 4995.455078125, 3048.7734375, 7200.1279296875 ], "wind_a": 0.0 }, "22685": { "creation_time": 22685, "p": [ 4999.20654296875, 3044.679443359375, 7217.82763671875 ], "wind_a": 0.0 }, "22686": { "creation_time": 22686, "p": [ 5003.35400390625, 3040.153564453125, 7235.28466796875 ], "wind_a": 0.0 }, "22687": { "creation_time": 22687, "p": [ 5007.6474609375, 3035.468017578125, 7252.65234375 ], "wind_a": 0.0 }, "22688": { "creation_time": 22688, "p": [ 5011.39892578125, 3031.3740234375, 7270.3525390625 ], "wind_a": 0.0 }, "22689": { "creation_time": 22689, "p": [ 5014.21240234375, 3028.3037109375, 7288.62744140625 ], "wind_a": 0.0 }, "22690": { "creation_time": 22690, "p": [ 5017.697265625, 3024.50048828125, 7306.49072265625 ], "wind_a": 0.0 }, "22691": { "creation_time": 22691, "p": [ 5021.283203125, 3020.58740234375, 7324.29248046875 ], "wind_a": 0.0 }, "22692": { "creation_time": 22692, "p": [ 5023.5908203125, 3018.068603515625, 7342.87744140625 ], "wind_a": 0.0 }, "22693": { "creation_time": 22693, "p": [ 5025.466796875, 3016.021728515625, 7361.7275390625 ], "wind_a": 0.0 }, "22694": { "creation_time": 22694, "p": [ 5026.404296875, 3014.998291015625, 7381.15234375 ], "wind_a": 0.0 }, "22695": { "creation_time": 22695, "p": [ 5028.2802734375, 3012.951171875, 7400.00244140625 ], "wind_a": 0.0 }, "22696": { "creation_time": 22696, "p": [ 5029.21826171875, 3011.927734375, 7419.42724609375 ], "wind_a": 0.0 }, "22697": { "creation_time": 22697, "p": [ 5029.21826171875, 3011.927734375, 7439.42724609375 ], "wind_a": 0.0 }, "22698": { "creation_time": 22698, "p": [ 5028.2802734375, 3012.951171875, 7458.85205078125 ], "wind_a": 0.0 }, "22699": { "creation_time": 22699, "p": [ 5028.2802734375, 3012.951171875, 7478.8525390625 ], "wind_a": 0.0 }, "22700": { "creation_time": 22700, "p": [ 5028.2802734375, 3012.951171875, 7498.8525390625 ], "wind_a": 0.0 }, "22701": { "creation_time": 22701, "p": [ 5029.21826171875, 3011.927734375, 7518.27734375 ], "wind_a": 0.0 }, "22702": { "creation_time": 22702, "p": [ 5030.15576171875, 3010.904296875, 7537.7021484375 ], "wind_a": 0.0 }, "22703": { "creation_time": 22703, "p": [ 5032.5947265625, 3008.242919921875, 7556.20703125 ], "wind_a": 0.0 }, "22704": { "creation_time": 22704, "p": [ 5036.720703125, 3003.73974609375, 7573.67724609375 ], "wind_a": 0.0 }, "22705": { "creation_time": 22705, "p": [ 5041.09228515625, 2998.968994140625, 7590.9970703125 ], "wind_a": 0.0 }, "22706": { "creation_time": 22706, "p": [ 5044.01513671875, 2995.779541015625, 7609.205078125 ], "wind_a": 0.0 }, "22707": { "creation_time": 22707, "p": [ 5047.037109375, 2992.4814453125, 7627.35205078125 ], "wind_a": 0.0 }, "22708": { "creation_time": 22708, "p": [ 5047.97509765625, 2991.4580078125, 7646.77685546875 ], "wind_a": 0.0 }, "22709": { "creation_time": 22709, "p": [ 5047.97509765625, 2991.4580078125, 7665.626953125 ], "wind_a": 0.0 }, "22710": { "creation_time": 22710, "p": [ 5045.43603515625, 2994.228759765625, 7684.0703125 ], "wind_a": 0.0 }, "22711": { "creation_time": 22711, "p": [ 5043.28564453125, 2996.575439453125, 7702.751953125 ], "wind_a": 0.0 }, "22712": { "creation_time": 22712, "p": [ 5041.58056640625, 2998.4365234375, 7721.7060546875 ], "wind_a": 0.0 }, "22713": { "creation_time": 22713, "p": [ 5040.47216796875, 2999.645751953125, 7741.02685546875 ], "wind_a": 0.0 }, "22714": { "creation_time": 22714, "p": [ 5037.0615234375, 3003.3681640625, 7758.935546875 ], "wind_a": 0.0 }, "22715": { "creation_time": 22715, "p": [ 5031.486328125, 3009.452392578125, 7775.517578125 ], "wind_a": 0.0 }, "22716": { "creation_time": 22716, "p": [ 5025.466796875, 3016.021728515625, 7791.82666015625 ], "wind_a": 0.0 }, "22717": { "creation_time": 22717, "p": [ 5020.99853515625, 3020.8974609375, 7809.08740234375 ], "wind_a": 0.0 }, "22718": { "creation_time": 22718, "p": [ 5017.9638671875, 3024.209716796875, 7827.2265625 ], "wind_a": 0.0 }, "22719": { "creation_time": 22719, "p": [ 5018.90185546875, 3023.186279296875, 7846.6513671875 ], "wind_a": 0.0 }, "22720": { "creation_time": 22720, "p": [ 5023.03369140625, 3018.677001953125, 7864.1181640625 ], "wind_a": 0.0 }, "22721": { "creation_time": 22721, "p": [ 5027.34228515625, 3013.974853515625, 7881.4765625 ], "wind_a": 0.0 }, "22722": { "creation_time": 22722, "p": [ 5029.21826171875, 3011.927734375, 7891.3193359375 ], "wind_a": 0.0 } } } } }, "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ] }, "linked_surfaces": [], "model": null, "volume_shape_zyx": [ 18946, 8174, 8174 ] }, "model_source": "/tmp/fit_reopt_1naaqgow/model_reopt.pt", "scale": [ 0.07999999821186066, 0.07999999821186066 ], "tags": { "date_last_modified": "20260614185644197", "reviewed": { "date": "20260604080934202" } }, "type": "seg", "uuid": "same_wrap000780_lasagna" }