{ "area_vx2": 827968.75, "base_shape_zyx": [ 18946, 8174, 8174 ], "bbox": [ [ 5326.30078125, 3283.54931640625, 8941.919921875 ], [ 5912.1572265625, 4428.9716796875, 9474.6142578125 ] ], "extra_channels": [ { "dtype": "float32", "file": "flow_gate_local_contrast.tif", "name": "flow_gate_local_contrast", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.local_contrast", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } }, { "dtype": "float32", "file": "flow_gate_component_normalized.tif", "name": "flow_gate_component_normalized", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.component_normalized", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } } ], "fit_config": { "_corr_point_roi_init_": { "effective_seed": [ 22811.14453125, 15904.1640625, 36814.98828125 ], "final_anchor_h": 218.19420923292637, "final_anchor_w": 39.51116491854191, "final_shell_id": "shell_0006.tifxyz", "final_trim_bottom": 35, "final_trim_top": 5, "init_margin_grid_points": 80, "initial_seed": [ 22811.14453125, 15904.1640625, 36814.98828125 ], "initial_shell_id": "shell_0006.tifxyz", "initial_skipped_point_count": 0, "initial_skipped_reasons": {}, "initial_trim_bottom": 35, "initial_trim_top": 5, "initial_usable_point_count": 57, "mode": "corr-point-roi", "model_h": 8077.830505371094, "model_w": 9029.135704040527, "model_w_unit": "voxels", "output_radius_grid_points": 20, "parsed_point_count": 57, "projected_h_span_grid": 1.556610107421875, "projected_h_span_vx": 77.83050537109375, "projected_points": [ { "collection_id": 686, "direction_sign": 1, "grid_distance_to_anchor": 10.076397494147905, "h": 217.8080596923828, "point_id": 54170, "row_index": 0, "w": 29.442169189453125 }, { "collection_id": 686, "direction_sign": 1, "grid_distance_to_anchor": 9.825718236224994, "h": 217.80947875976563, "point_id": 54171, "row_index": 1, "w": 29.692981719970703 }, { "collection_id": 686, "direction_sign": 1, "grid_distance_to_anchor": 9.465995883353832, "h": 217.82290649414063, "point_id": 54172, "row_index": 2, "w": 30.052453994750977 }, { "collection_id": 686, "direction_sign": 1, "grid_distance_to_anchor": 9.10708203725016, "h": 217.83126831054688, "point_id": 54173, "row_index": 3, "w": 30.411317825317383 }, { "collection_id": 686, "direction_sign": 1, "grid_distance_to_anchor": 8.745639208266216, "h": 217.84925842285156, "point_id": 54174, "row_index": 4, "w": 30.77233123779297 }, { "collection_id": 686, "direction_sign": 1, "grid_distance_to_anchor": 8.38861522196736, "h": 217.86048889160156, "point_id": 54175, "row_index": 5, "w": 31.12919044494629 }, { "collection_id": 686, "direction_sign": 1, "grid_distance_to_anchor": 8.03277651411727, "h": 217.8733673095703, "point_id": 54176, "row_index": 6, "w": 31.484798431396484 }, { "collection_id": 686, "direction_sign": 1, "grid_distance_to_anchor": 7.6727853850610614, "h": 217.8899688720703, "point_id": 54177, "row_index": 7, "w": 31.84441375732422 }, { "collection_id": 686, "direction_sign": 1, "grid_distance_to_anchor": 7.3146533677318, "h": 217.90066528320313, "point_id": 54178, "row_index": 8, "w": 32.2024040222168 }, { "collection_id": 686, "direction_sign": 1, "grid_distance_to_anchor": 6.953780587502006, "h": 217.9117889404297, "point_id": 54179, "row_index": 9, "w": 32.5631217956543 }, { "collection_id": 686, "direction_sign": 1, "grid_distance_to_anchor": 6.595943359432186, "h": 217.9192352294922, "point_id": 54180, "row_index": 10, "w": 32.920955657958984 }, { "collection_id": 686, "direction_sign": 1, "grid_distance_to_anchor": 6.234727757502626, "h": 217.9341278076172, "point_id": 54181, "row_index": 11, "w": 33.281864166259766 }, { "collection_id": 686, "direction_sign": 1, "grid_distance_to_anchor": 5.873677787737809, "h": 217.94725036621094, "point_id": 54182, "row_index": 12, "w": 33.64268112182617 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 5.51273428337196, "h": 217.95932006835938, "point_id": 54183, "row_index": 13, "w": 34.00343704223633 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 5.152478215390752, "h": 217.96531677246094, "point_id": 54184, "row_index": 14, "w": 34.363773345947266 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 4.788834489057568, "h": 217.97772216796875, "point_id": 54185, "row_index": 15, "w": 34.72722625732422 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 4.429476847826306, "h": 217.982666015625, "point_id": 54186, "row_index": 16, "w": 35.08674240112305 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 4.068513868890867, "h": 217.98944091796875, "point_id": 54187, "row_index": 17, "w": 35.44780731201172 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 3.7020226882270397, "h": 218.0069580078125, "point_id": 54188, "row_index": 18, "w": 35.813880920410156 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 3.339080533312067, "h": 218.02647399902344, "point_id": 54189, "row_index": 19, "w": 36.176300048828125 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 2.9698676194277485, "h": 218.03488159179688, "point_id": 54190, "row_index": 20, "w": 36.54557418823242 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 2.592791246893282, "h": 218.06031799316406, "point_id": 54191, "row_index": 21, "w": 36.92183303833008 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 2.2160676255580936, "h": 218.08932495117188, "point_id": 54192, "row_index": 22, "w": 37.29758071899414 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 1.8424408094139104, "h": 218.11090087890625, "point_id": 54193, "row_index": 23, "w": 37.67060852050781 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 1.4840821493898488, "h": 218.1377716064453, "point_id": 54194, "row_index": 24, "w": 38.02815628051758 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 1.1139044861726644, "h": 218.1551513671875, "point_id": 54195, "row_index": 25, "w": 38.397945404052734 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 0.7476170612940284, "h": 218.16641235351563, "point_id": 54196, "row_index": 26, "w": 38.76406478881836 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 0.3737808355080068, "h": 218.17469787597656, "point_id": 54197, "row_index": 27, "w": 39.13789367675781 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 0.0022172835109541393, "h": 218.19302368164063, "point_id": 54198, "row_index": 28, "w": 39.513038635253906 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 0.36104320328371325, "h": 218.1971435546875, "point_id": 54199, "row_index": 29, "w": 39.872196197509766 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 0.723488235864994, "h": 218.20977783203125, "point_id": 54200, "row_index": 30, "w": 40.2344856262207 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 1.090426075255014, "h": 218.21408081054688, "point_id": 54201, "row_index": 31, "w": 40.601409912109375 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 1.4577890209039652, "h": 218.23126220703125, "point_id": 54202, "row_index": 32, "w": 40.968482971191406 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 1.8226430264368123, "h": 218.25218200683594, "point_id": 54203, "row_index": 33, "w": 41.3328857421875 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 2.1846445956867617, "h": 218.2642364501953, "point_id": 54204, "row_index": 34, "w": 41.69468688964844 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 2.5502946191056974, "h": 218.26856994628906, "point_id": 54205, "row_index": 35, "w": 42.06037521362305 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 2.9212031950620667, "h": 218.2790069580078, "point_id": 54206, "row_index": 36, "w": 42.43113708496094 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 3.2895582630860085, "h": 218.3011474609375, "point_id": 54207, "row_index": 37, "w": 42.79898452758789 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 3.6624506424791257, "h": 218.34390258789063, "point_id": 54208, "row_index": 38, "w": 43.170555114746094 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 4.0377162659667905, "h": 218.3826141357422, "point_id": 54209, "row_index": 39, "w": 43.54448318481445 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 4.4257367994689885, "h": 218.41610717773438, "point_id": 54210, "row_index": 40, "w": 43.93133544921875 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 4.835353046131717, "h": 218.46139526367188, "point_id": 54211, "row_index": 41, "w": 44.33913040161133 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 5.248349452898587, "h": 218.4898223876953, "point_id": 54212, "row_index": 42, "w": 44.751182556152344 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 5.665301765031339, "h": 218.4962158203125, "point_id": 54213, "row_index": 43, "w": 45.16841125488281 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 6.042247510634277, "h": 218.5431671142578, "point_id": 54214, "row_index": 44, "w": 45.54332733154297 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 6.392534887492205, "h": 218.6099395751953, "point_id": 54215, "row_index": 45, "w": 45.890167236328125 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 6.766030663627187, "h": 218.67088317871094, "point_id": 54216, "row_index": 46, "w": 46.26038360595703 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 7.144301779350603, "h": 218.7718505859375, "point_id": 54217, "row_index": 47, "w": 46.632076263427734 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 7.549949119871755, "h": 218.85215759277344, "point_id": 54218, "row_index": 48, "w": 47.03239059448242 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 7.965091921164382, "h": 218.9790802001953, "point_id": 54219, "row_index": 49, "w": 47.43749237060547 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 8.402672074383455, "h": 218.5311737060547, "point_id": 54220, "row_index": 50, "w": 47.90707778930664 }, { "collection_id": 686, "direction_sign": 1, "grid_distance_to_anchor": 8.811621055449773, "h": 219.20114135742188, "point_id": 54221, "row_index": 51, "w": 48.26506423950195 }, { "collection_id": 686, "direction_sign": 1, "grid_distance_to_anchor": 9.22241291468053, "h": 219.25999450683594, "point_id": 54222, "row_index": 52, "w": 48.67178726196289 }, { "collection_id": 686, "direction_sign": 1, "grid_distance_to_anchor": 9.492690352551884, "h": 219.20962524414063, "point_id": 54223, "row_index": 53, "w": 48.94939041137695 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 9.760048058469616, "h": 218.7419891357422, "point_id": 54224, "row_index": 54, "w": 49.255828857421875 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 10.129143938013295, "h": 219.30055236816406, "point_id": 54225, "row_index": 55, "w": 49.579708099365234 }, { "collection_id": 686, "direction_sign": -1, "grid_distance_to_anchor": 10.578669647831344, "h": 219.3646697998047, "point_id": 54226, "row_index": 56, "w": 50.02488327026367 } ], "projected_w_span_grid": 20.582714080810547, "projected_w_span_vx": 1029.1357040405273, "projection_mode": "normal-line", "skipped_point_count": 0, "skipped_points": [], "skipped_reasons": {}, "usable_point_count": 57, "windings": 1 }, "args": { "approval-inpaint": false, "approval-inpaint-corr-spacing": null, "approval-inpaint-output-mask": false, "approval-inpaint-output-mask-dilate": 3, "approval-inpaint-padding-frac": 0.25, "approval-inpaint-tifxyz": null, "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "crop": null, "cuda-gridsample": 1, "depth": 1, "device": "cuda", "downscale": 4.0, "erode-valid-mask": 0, "flatten-solver": "torch", "init-mode": "shell-dir-crop", "input": "/ephemeral/lasag_strip_outputs/.lasagna_point_strip_work/collection_686/point_strip.lasagna.json", "mesh-h": 32, "mesh-step": 50, "mesh-w": 32, "model-h": 8077.830505371094, "model-init": "seed", "model-input": null, "model-output": "/tmp/fit_reopt_xvcnp38w/model_reopt.pt", "model-w": 9029.135704040527, "model-w-unit": "voxels", "normal-mask-zero": 0, "out-dir": null, "progress": true, "pyramid-d": false, "seed": [ 22811.14453125, 15904.1640625, 36814.98828125 ], "snapshot-interval": 1000, "sparse-prefetch-backend": "tensorstore", "subsample-mesh": 4, "subsample-winding": 4, "tifxyz-flow-gate-channels": true, "tifxyz-init": null, "winding-step": 25, "winding-volume": null, "windings": 1, "z-center": 0.0 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "686": { "color": [ 0.47058823704719543, 0.7058823704719543, 1.0 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap905", "points": { "54170": { "creation_time": 54170, "p": [ 21623.744140625, 14198.1044921875, 36814.98828125 ], "wind_a": 0.0 }, "54171": { "creation_time": 54171, "p": [ 21638.77734375, 14247.38671875, 36814.98828125 ], "wind_a": 0.0 }, "54172": { "creation_time": 54172, "p": [ 21669.0703125, 14314.83984375, 36814.98828125 ], "wind_a": 0.0 }, "54173": { "creation_time": 54173, "p": [ 21699.0625, 14382.416015625, 36814.98828125 ], "wind_a": 0.0 }, "54174": { "creation_time": 54174, "p": [ 21736.49609375, 14446.91015625, 36814.98828125 ], "wind_a": 0.0 }, "54175": { "creation_time": 54175, "p": [ 21770.322265625, 14512.8994140625, 36814.98828125 ], "wind_a": 0.0 }, "54176": { "creation_time": 54176, "p": [ 21804.986328125, 14578.541015625, 36814.98828125 ], "wind_a": 0.0 }, "54177": { "creation_time": 54177, "p": [ 21842.951171875, 14642.8154296875, 36814.98828125 ], "wind_a": 0.0 }, "54178": { "creation_time": 54178, "p": [ 21878.2578125, 14708.1904296875, 36814.98828125 ], "wind_a": 0.0 }, "54179": { "creation_time": 54179, "p": [ 21916.224609375, 14772.46484375, 36814.98828125 ], "wind_a": 0.0 }, "54180": { "creation_time": 54180, "p": [ 21951.53125, 14837.83984375, 36814.98828125 ], "wind_a": 0.0 }, "54181": { "creation_time": 54181, "p": [ 21992.154296875, 14901.013671875, 36814.98828125 ], "wind_a": 0.0 }, "54182": { "creation_time": 54182, "p": [ 22032.77734375, 14964.1865234375, 36814.98828125 ], "wind_a": 0.0 }, "54183": { "creation_time": 54183, "p": [ 22073.400390625, 15027.3603515625, 36814.98828125 ], "wind_a": 0.0 }, "54184": { "creation_time": 54184, "p": [ 22114.0234375, 15090.533203125, 36814.98828125 ], "wind_a": 0.0 }, "54185": { "creation_time": 54185, "p": [ 22157.3046875, 15152.60546875, 36814.98828125 ], "wind_a": 0.0 }, "54186": { "creation_time": 54186, "p": [ 22197.927734375, 15215.779296875, 36814.98828125 ], "wind_a": 0.0 }, "54187": { "creation_time": 54187, "p": [ 22241.20703125, 15277.8515625, 36814.98828125 ], "wind_a": 0.0 }, "54188": { "creation_time": 54188, "p": [ 22289.8046875, 15337.72265625, 36814.98828125 ], "wind_a": 0.0 }, "54189": { "creation_time": 54189, "p": [ 22339.5, 15394.9365234375, 36814.98828125 ], "wind_a": 0.0 }, "54190": { "creation_time": 54190, "p": [ 22388.095703125, 15454.8076171875, 36814.98828125 ], "wind_a": 0.0 }, "54191": { "creation_time": 54191, "p": [ 22442.0078125, 15512.4765625, 36814.98828125 ], "wind_a": 0.0 }, "54192": { "creation_time": 54192, "p": [ 22499.451171875, 15566.48046875, 36814.98828125 ], "wind_a": 0.0 }, "54193": { "creation_time": 54193, "p": [ 22554.6875, 15621.3994140625, 36814.98828125 ], "wind_a": 0.0 }, "54194": { "creation_time": 54194, "p": [ 22609.244140625, 15672.197265625, 36814.98828125 ], "wind_a": 0.0 }, "54195": { "creation_time": 54195, "p": [ 22661.59765625, 15728.3095703125, 36814.98828125 ], "wind_a": 0.0 }, "54196": { "creation_time": 54196, "p": [ 22711.294921875, 15785.5234375, 36814.98828125 ], "wind_a": 0.0 }, "54197": { "creation_time": 54197, "p": [ 22759.890625, 15845.3935546875, 36814.98828125 ], "wind_a": 0.0 }, "54198": { "creation_time": 54198, "p": [ 22811.14453125, 15904.1640625, 36814.98828125 ], "wind_a": 0.0 }, "54199": { "creation_time": 54199, "p": [ 22856.5, 15963.17578125, 36814.98828125 ], "wind_a": 0.0 }, "54200": { "creation_time": 54200, "p": [ 22905.22265625, 16020.79296875, 36814.98828125 ], "wind_a": 0.0 }, "54201": { "creation_time": 54201, "p": [ 22951.16015625, 16081.763671875, 36814.98828125 ], "wind_a": 0.0 }, "54202": { "creation_time": 54202, "p": [ 22999.755859375, 16141.634765625, 36814.98828125 ], "wind_a": 0.0 }, "54203": { "creation_time": 54203, "p": [ 23049.453125, 16198.8486328125, 36814.98828125 ], "wind_a": 0.0 }, "54204": { "creation_time": 54204, "p": [ 23096.4921875, 16257.162109375, 36814.98828125 ], "wind_a": 0.0 }, "54205": { "creation_time": 54205, "p": [ 23142.4296875, 16318.134765625, 36814.98828125 ], "wind_a": 0.0 }, "54206": { "creation_time": 54206, "p": [ 23188.3671875, 16379.1064453125, 36814.98828125 ], "wind_a": 0.0 }, "54207": { "creation_time": 54207, "p": [ 23236.099609375, 16439.3359375, 36814.98828125 ], "wind_a": 0.0 }, "54208": { "creation_time": 54208, "p": [ 23282.90234375, 16499.94921875, 36814.98828125 ], "wind_a": 0.0 }, "54209": { "creation_time": 54209, "p": [ 23322.54296875, 16563.529296875, 36814.98828125 ], "wind_a": 0.0 }, "54210": { "creation_time": 54210, "p": [ 23356.3671875, 16629.517578125, 36814.98828125 ], "wind_a": 0.0 }, "54211": { "creation_time": 54211, "p": [ 23378.91796875, 16700.177734375, 36814.98828125 ], "wind_a": 0.0 }, "54212": { "creation_time": 54212, "p": [ 23397.556640625, 16772.45703125, 36814.98828125 ], "wind_a": 0.0 }, "54213": { "creation_time": 54213, "p": [ 23401.46875, 16850.8359375, 36814.98828125 ], "wind_a": 0.0 }, "54214": { "creation_time": 54214, "p": [ 23405.2265625, 16929.28125, 36814.98828125 ], "wind_a": 0.0 }, "54215": { "creation_time": 54215, "p": [ 23412.744140625, 17006.166015625, 36814.98828125 ], "wind_a": 0.0 }, "54216": { "creation_time": 54216, "p": [ 23420.26171875, 17083.052734375, 36814.98828125 ], "wind_a": 0.0 }, "54217": { "creation_time": 54217, "p": [ 23427.77734375, 17159.939453125, 36814.98828125 ], "wind_a": 0.0 }, "54218": { "creation_time": 54218, "p": [ 23436.66015625, 17236.259765625, 36814.98828125 ], "wind_a": 0.0 }, "54219": { "creation_time": 54219, "p": [ 23442.810546875, 17313.712890625, 36814.98828125 ], "wind_a": 0.0 }, "54220": { "creation_time": 54220, "p": [ 23442.810546875, 17393.712890625, 36814.98828125 ], "wind_a": 0.0 }, "54221": { "creation_time": 54221, "p": [ 23435.294921875, 17470.599609375, 36814.98828125 ], "wind_a": 0.0 }, "54222": { "creation_time": 54222, "p": [ 23431.53515625, 17549.04296875, 36814.98828125 ], "wind_a": 0.0 }, "54223": { "creation_time": 54223, "p": [ 23431.53515625, 17629.04296875, 36814.98828125 ], "wind_a": 0.0 }, "54224": { "creation_time": 54224, "p": [ 23442.810546875, 17704.37109375, 36814.98828125 ], "wind_a": 0.0 }, "54225": { "creation_time": 54225, "p": [ 23457.84375, 17778.14453125, 36814.98828125 ], "wind_a": 0.0 }, "54226": { "creation_time": 54226, "p": [ 23465.361328125, 17855.03125, 36814.98828125 ], "wind_a": 0.0 } } } } }, "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ], "vc3d_volume_shape_zyx": [ 18946, 8174, 8174 ] }, "format": "tifxyz", "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "lasagna_job": { "config": { "args": { "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "init-mode": "shell-dir-crop", "mesh-step": 50.0, "model-h": 5000.0, "model-init": "seed", "model-w": 5000.0, "model-w-unit": "voxels", "seed": [ 5702.7861328125, 3976.041015625, 9203.7470703125 ], "tifxyz-flow-gate-channels": true, "windings": 1 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "686": { "color": [ 0.47058823704719543, 0.7058823704719543, 1.0 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap905", "points": { "54170": { "creation_time": 54170, "p": [ 5405.93603515625, 3549.526123046875, 9203.7470703125 ], "wind_a": 0.0 }, "54171": { "creation_time": 54171, "p": [ 5409.6943359375, 3561.8466796875, 9203.7470703125 ], "wind_a": 0.0 }, "54172": { "creation_time": 54172, "p": [ 5417.267578125, 3578.7099609375, 9203.7470703125 ], "wind_a": 0.0 }, "54173": { "creation_time": 54173, "p": [ 5424.765625, 3595.60400390625, 9203.7470703125 ], "wind_a": 0.0 }, "54174": { "creation_time": 54174, "p": [ 5434.1240234375, 3611.7275390625, 9203.7470703125 ], "wind_a": 0.0 }, "54175": { "creation_time": 54175, "p": [ 5442.58056640625, 3628.224853515625, 9203.7470703125 ], "wind_a": 0.0 }, "54176": { "creation_time": 54176, "p": [ 5451.24658203125, 3644.63525390625, 9203.7470703125 ], "wind_a": 0.0 }, "54177": { "creation_time": 54177, "p": [ 5460.73779296875, 3660.703857421875, 9203.7470703125 ], "wind_a": 0.0 }, "54178": { "creation_time": 54178, "p": [ 5469.564453125, 3677.047607421875, 9203.7470703125 ], "wind_a": 0.0 }, "54179": { "creation_time": 54179, "p": [ 5479.05615234375, 3693.1162109375, 9203.7470703125 ], "wind_a": 0.0 }, "54180": { "creation_time": 54180, "p": [ 5487.8828125, 3709.4599609375, 9203.7470703125 ], "wind_a": 0.0 }, "54181": { "creation_time": 54181, "p": [ 5498.03857421875, 3725.25341796875, 9203.7470703125 ], "wind_a": 0.0 }, "54182": { "creation_time": 54182, "p": [ 5508.1943359375, 3741.046630859375, 9203.7470703125 ], "wind_a": 0.0 }, "54183": { "creation_time": 54183, "p": [ 5518.35009765625, 3756.840087890625, 9203.7470703125 ], "wind_a": 0.0 }, "54184": { "creation_time": 54184, "p": [ 5528.505859375, 3772.63330078125, 9203.7470703125 ], "wind_a": 0.0 }, "54185": { "creation_time": 54185, "p": [ 5539.326171875, 3788.1513671875, 9203.7470703125 ], "wind_a": 0.0 }, "54186": { "creation_time": 54186, "p": [ 5549.48193359375, 3803.94482421875, 9203.7470703125 ], "wind_a": 0.0 }, "54187": { "creation_time": 54187, "p": [ 5560.3017578125, 3819.462890625, 9203.7470703125 ], "wind_a": 0.0 }, "54188": { "creation_time": 54188, "p": [ 5572.451171875, 3834.4306640625, 9203.7470703125 ], "wind_a": 0.0 }, "54189": { "creation_time": 54189, "p": [ 5584.875, 3848.734130859375, 9203.7470703125 ], "wind_a": 0.0 }, "54190": { "creation_time": 54190, "p": [ 5597.02392578125, 3863.701904296875, 9203.7470703125 ], "wind_a": 0.0 }, "54191": { "creation_time": 54191, "p": [ 5610.501953125, 3878.119140625, 9203.7470703125 ], "wind_a": 0.0 }, "54192": { "creation_time": 54192, "p": [ 5624.86279296875, 3891.6201171875, 9203.7470703125 ], "wind_a": 0.0 }, "54193": { "creation_time": 54193, "p": [ 5638.671875, 3905.349853515625, 9203.7470703125 ], "wind_a": 0.0 }, "54194": { "creation_time": 54194, "p": [ 5652.31103515625, 3918.04931640625, 9203.7470703125 ], "wind_a": 0.0 }, "54195": { "creation_time": 54195, "p": [ 5665.3994140625, 3932.077392578125, 9203.7470703125 ], "wind_a": 0.0 }, "54196": { "creation_time": 54196, "p": [ 5677.82373046875, 3946.380859375, 9203.7470703125 ], "wind_a": 0.0 }, "54197": { "creation_time": 54197, "p": [ 5689.97265625, 3961.348388671875, 9203.7470703125 ], "wind_a": 0.0 }, "54198": { "creation_time": 54198, "p": [ 5702.7861328125, 3976.041015625, 9203.7470703125 ], "wind_a": 0.0 }, "54199": { "creation_time": 54199, "p": [ 5714.125, 3990.7939453125, 9203.7470703125 ], "wind_a": 0.0 }, "54200": { "creation_time": 54200, "p": [ 5726.3056640625, 4005.1982421875, 9203.7470703125 ], "wind_a": 0.0 }, "54201": { "creation_time": 54201, "p": [ 5737.7900390625, 4020.44091796875, 9203.7470703125 ], "wind_a": 0.0 }, "54202": { "creation_time": 54202, "p": [ 5749.93896484375, 4035.40869140625, 9203.7470703125 ], "wind_a": 0.0 }, "54203": { "creation_time": 54203, "p": [ 5762.36328125, 4049.712158203125, 9203.7470703125 ], "wind_a": 0.0 }, "54204": { "creation_time": 54204, "p": [ 5774.123046875, 4064.29052734375, 9203.7470703125 ], "wind_a": 0.0 }, "54205": { "creation_time": 54205, "p": [ 5785.607421875, 4079.53369140625, 9203.7470703125 ], "wind_a": 0.0 }, "54206": { "creation_time": 54206, "p": [ 5797.091796875, 4094.776611328125, 9203.7470703125 ], "wind_a": 0.0 }, "54207": { "creation_time": 54207, "p": [ 5809.02490234375, 4109.833984375, 9203.7470703125 ], "wind_a": 0.0 }, "54208": { "creation_time": 54208, "p": [ 5820.7255859375, 4124.9873046875, 9203.7470703125 ], "wind_a": 0.0 }, "54209": { "creation_time": 54209, "p": [ 5830.6357421875, 4140.88232421875, 9203.7470703125 ], "wind_a": 0.0 }, "54210": { "creation_time": 54210, "p": [ 5839.091796875, 4157.37939453125, 9203.7470703125 ], "wind_a": 0.0 }, "54211": { "creation_time": 54211, "p": [ 5844.7294921875, 4175.04443359375, 9203.7470703125 ], "wind_a": 0.0 }, "54212": { "creation_time": 54212, "p": [ 5849.38916015625, 4193.1142578125, 9203.7470703125 ], "wind_a": 0.0 }, "54213": { "creation_time": 54213, "p": [ 5850.3671875, 4212.708984375, 9203.7470703125 ], "wind_a": 0.0 }, "54214": { "creation_time": 54214, "p": [ 5851.306640625, 4232.3203125, 9203.7470703125 ], "wind_a": 0.0 }, "54215": { "creation_time": 54215, "p": [ 5853.18603515625, 4251.54150390625, 9203.7470703125 ], "wind_a": 0.0 }, "54216": { "creation_time": 54216, "p": [ 5855.0654296875, 4270.76318359375, 9203.7470703125 ], "wind_a": 0.0 }, "54217": { "creation_time": 54217, "p": [ 5856.9443359375, 4289.98486328125, 9203.7470703125 ], "wind_a": 0.0 }, "54218": { "creation_time": 54218, "p": [ 5859.1650390625, 4309.06494140625, 9203.7470703125 ], "wind_a": 0.0 }, "54219": { "creation_time": 54219, "p": [ 5860.70263671875, 4328.42822265625, 9203.7470703125 ], "wind_a": 0.0 }, "54220": { "creation_time": 54220, "p": [ 5860.70263671875, 4348.42822265625, 9203.7470703125 ], "wind_a": 0.0 }, "54221": { "creation_time": 54221, "p": [ 5858.82373046875, 4367.64990234375, 9203.7470703125 ], "wind_a": 0.0 }, "54222": { "creation_time": 54222, "p": [ 5857.8837890625, 4387.2607421875, 9203.7470703125 ], "wind_a": 0.0 }, "54223": { "creation_time": 54223, "p": [ 5857.8837890625, 4407.2607421875, 9203.7470703125 ], "wind_a": 0.0 }, "54224": { "creation_time": 54224, "p": [ 5860.70263671875, 4426.0927734375, 9203.7470703125 ], "wind_a": 0.0 }, "54225": { "creation_time": 54225, "p": [ 5864.4609375, 4444.5361328125, 9203.7470703125 ], "wind_a": 0.0 }, "54226": { "creation_time": 54226, "p": [ 5866.34033203125, 4463.7578125, 9203.7470703125 ], "wind_a": 0.0 } } } } }, "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ] }, "linked_surfaces": [], "model": null, "volume_shape_zyx": [ 18946, 8174, 8174 ] }, "model_source": "/tmp/fit_reopt_xvcnp38w/model_reopt.pt", "scale": [ 0.07999999821186066, 0.07999999821186066 ], "tags": { "date_last_modified": "20260614185644221", "reviewed": { "date": "20260604080934207" } }, "type": "seg", "uuid": "same_wrap000905_lasagna" }