{ "area_vx2": 835000.0, "base_shape_zyx": [ 18946, 8174, 8174 ], "bbox": [ [ 4535.36572265625, 2995.36328125, 8871.70703125 ], [ 5013.27294921875, 3338.943115234375, 10435.478515625 ] ], "fit_config": { "_corr_point_roi_init_": { "effective_seed": [ 19150.8671875, 12340.95703125, 38664.828125 ], "final_anchor_h": 207.2059913277626, "final_anchor_w": 50.3038801625371, "final_shell_id": "shell_0000.tifxyz", "final_trim_bottom": 28, "final_trim_top": 27, "init_margin_grid_points": 80, "initial_seed": [ 19150.8671875, 12340.95703125, 38664.828125 ], "initial_shell_id": "shell_0000.tifxyz", "initial_skipped_point_count": 0, "initial_skipped_reasons": {}, "initial_trim_bottom": 28, "initial_trim_top": 27, "initial_usable_point_count": 56, "mode": "corr-point-roi", "model_h": 9032.99789428711, "model_w": 8017.029190063477, "model_w_unit": "voxels", "output_radius_grid_points": 20, "parsed_point_count": 56, "projected_h_span_grid": 20.659957885742188, "projected_h_span_vx": 1032.9978942871094, "projected_points": [ { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 10.666206593985725, "h": 196.5446014404297, "point_id": 3855, "row_index": 0, "w": 50.624393463134766 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 10.403159901055362, "h": 196.80670166015625, "point_id": 3856, "row_index": 1, "w": 50.587623596191406 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 5.163275959439846, "h": 202.04299926757813, "point_id": 3857, "row_index": 2, "w": 50.35802459716797 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 9.35968531155144, "h": 197.8472137451172, "point_id": 3858, "row_index": 3, "w": 50.43423080444336 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 8.973891309822427, "h": 198.23243713378906, "point_id": 3859, "row_index": 4, "w": 50.38166427612305 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 8.759237686659942, "h": 198.4468231201172, "point_id": 3860, "row_index": 5, "w": 50.338768005371094 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 8.51009783146155, "h": 198.69606018066406, "point_id": 3861, "row_index": 6, "w": 50.35714340209961 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 8.091037250624815, "h": 199.11534118652344, "point_id": 3862, "row_index": 7, "w": 50.383026123046875 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 7.682296521275204, "h": 199.5244903564453, "point_id": 3863, "row_index": 8, "w": 50.41443634033203 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 7.144306403910542, "h": 200.06301879882813, "point_id": 3864, "row_index": 9, "w": 50.44192886352539 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 6.690263340696162, "h": 200.5175018310547, "point_id": 3865, "row_index": 10, "w": 50.45793151855469 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 6.301520264048176, "h": 200.90696716308594, "point_id": 3866, "row_index": 11, "w": 50.48122787475586 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 5.974944362659668, "h": 201.23468017578125, "point_id": 3867, "row_index": 12, "w": 50.51221466064453 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 5.748902167391722, "h": 201.46080017089844, "point_id": 3868, "row_index": 13, "w": 50.51041030883789 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 5.584122618844736, "h": 201.6251678466797, "point_id": 3869, "row_index": 14, "w": 50.49580383300781 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 5.137165966668121, "h": 202.07107543945313, "point_id": 3870, "row_index": 15, "w": 50.455909729003906 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 4.70125914220271, "h": 202.50592041015625, "point_id": 3871, "row_index": 16, "w": 50.40957260131836 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 4.72283807545801, "h": 202.48419189453125, "point_id": 3872, "row_index": 17, "w": 50.402923583984375 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 3.8441065619009662, "h": 203.36276245117188, "point_id": 3873, "row_index": 18, "w": 50.38602066040039 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 3.4951222706265157, "h": 203.71131896972656, "point_id": 3874, "row_index": 19, "w": 50.35995864868164 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 3.1095310965813123, "h": 204.09677124023438, "point_id": 3875, "row_index": 20, "w": 50.34785842895508 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 2.748196545546356, "h": 204.45791625976563, "point_id": 3876, "row_index": 21, "w": 50.32971954345703 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 2.392930636842984, "h": 204.81309509277344, "point_id": 3877, "row_index": 22, "w": 50.31671142578125 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 2.0254263653947184, "h": 205.1805877685547, "point_id": 3878, "row_index": 23, "w": 50.31349182128906 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 1.584248629679324, "h": 205.62176513671875, "point_id": 3879, "row_index": 24, "w": 50.295448303222656 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 1.0722489229926198, "h": 206.13381958007813, "point_id": 3880, "row_index": 25, "w": 50.291015625 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 0.8010041854138218, "h": 206.40509033203125, "point_id": 3881, "row_index": 26, "w": 50.29102325439453 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 0.45046789864427794, "h": 206.7559051513672, "point_id": 3882, "row_index": 27, "w": 50.28533935546875 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 0.032029349513220784, "h": 207.1810302734375, "point_id": 3883, "row_index": 28, "w": 50.283809661865234 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 0.4919603695856802, "h": 206.7140655517578, "point_id": 3884, "row_index": 29, "w": 50.29804611206055 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 3.6667970347232015, "h": 210.87274169921875, "point_id": 3885, "row_index": 30, "w": 50.28538131713867 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 1.1721957925239879, "h": 208.378173828125, "point_id": 3886, "row_index": 31, "w": 50.29829788208008 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 1.5520097523704084, "h": 208.75799560546875, "point_id": 3887, "row_index": 32, "w": 50.30800247192383 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 1.9055104054046932, "h": 209.11141967773438, "point_id": 3888, "row_index": 33, "w": 50.321563720703125 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 2.3286279860183816, "h": 209.53448486328125, "point_id": 3889, "row_index": 34, "w": 50.32890319824219 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 2.706838137986047, "h": 209.91256713867188, "point_id": 3890, "row_index": 35, "w": 50.3415641784668 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 3.0350238897955806, "h": 210.24081420898438, "point_id": 3891, "row_index": 36, "w": 50.338809967041016 }, { "collection_id": 2636, "direction_sign": -1, "grid_distance_to_anchor": 3.380561085602823, "h": 210.58653259277344, "point_id": 3892, "row_index": 37, "w": 50.31545639038086 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 4.188352211068297, "h": 211.3943328857422, "point_id": 3893, "row_index": 38, "w": 50.29443359375 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 4.718251157408031, "h": 211.92422485351563, "point_id": 3894, "row_index": 39, "w": 50.29098129272461 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 4.601142185286262, "h": 211.80711364746094, "point_id": 3895, "row_index": 40, "w": 50.29035949707031 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 5.000751479600571, "h": 212.2067413330078, "point_id": 3896, "row_index": 41, "w": 50.30772018432617 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 5.383237579690207, "h": 212.5891571044922, "point_id": 3897, "row_index": 42, "w": 50.33168411254883 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 5.736537397130072, "h": 212.9423828125, "point_id": 3898, "row_index": 43, "w": 50.34479522705078 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 6.10673007958295, "h": 213.31248474121094, "point_id": 3899, "row_index": 44, "w": 50.357643127441406 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 6.504910157737368, "h": 213.71058654785156, "point_id": 3900, "row_index": 45, "w": 50.367889404296875 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 6.881849413391753, "h": 214.0872802734375, "point_id": 3901, "row_index": 46, "w": 50.39170837402344 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 7.236397740466939, "h": 214.4414825439453, "point_id": 3902, "row_index": 47, "w": 50.418418884277344 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 7.619465131706902, "h": 214.82411193847656, "point_id": 3903, "row_index": 48, "w": 50.44701385498047 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 8.014068970951548, "h": 215.2184600830078, "point_id": 3904, "row_index": 49, "w": 50.46402359008789 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 8.381086911323315, "h": 215.58494567871094, "point_id": 3905, "row_index": 50, "w": 50.49293518066406 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 8.720219456286308, "h": 215.92333984375, "point_id": 3906, "row_index": 51, "w": 50.527626037597656 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 9.123508392635879, "h": 216.32618713378906, "point_id": 3907, "row_index": 52, "w": 50.549713134765625 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 9.507250840019948, "h": 216.7094268798828, "point_id": 3908, "row_index": 53, "w": 50.57319641113281 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 9.854295777604433, "h": 217.05563354492188, "point_id": 3909, "row_index": 54, "w": 50.606689453125 }, { "collection_id": 2636, "direction_sign": 1, "grid_distance_to_anchor": 10.003600007110917, "h": 217.20455932617188, "point_id": 3910, "row_index": 55, "w": 50.62113571166992 } ], "projected_w_span_grid": 0.34058380126953125, "projected_w_span_vx": 17.029190063476563, "projection_mode": "normal-line", "skipped_point_count": 0, "skipped_points": [], "skipped_reasons": {}, "usable_point_count": 56, "windings": 1 }, "args": { "approval-inpaint": false, "approval-inpaint-corr-spacing": null, "approval-inpaint-output-mask": false, "approval-inpaint-output-mask-dilate": 3, "approval-inpaint-padding-frac": 0.25, "approval-inpaint-tifxyz": null, "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "crop": null, "cuda-gridsample": 1, "depth": 1, "device": "cuda", "downscale": 4.0, "erode-valid-mask": 0, "flatten-solver": "torch", "init-mode": "shell-dir-crop", "input": "/ephemeral/lasag_strip_outputs/.lasagna_point_strip_work/collection_2636/point_strip.lasagna.json", "mesh-h": 32, "mesh-step": 50, "mesh-w": 32, "model-h": 9032.99789428711, "model-init": "seed", "model-input": null, "model-output": "/tmp/fit_reopt_sq61yeu7/model_reopt.pt", "model-w": 8017.029190063477, "model-w-unit": "voxels", "normal-mask-zero": 0, "out-dir": null, "progress": true, "pyramid-d": false, "seed": [ 19150.8671875, 12340.95703125, 38664.828125 ], "snapshot-interval": 1000, "sparse-prefetch-backend": "tensorstore", "subsample-mesh": 4, "subsample-winding": 4, "tifxyz-flow-gate-channels": true, "tifxyz-init": null, "winding-step": 25, "winding-volume": null, "windings": 1, "z-center": 0.0 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "2636": { "color": [ 0.0, 1.0, 0.27450981736183167 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap1020", "points": { "3855": { "creation_time": 3855, "p": [ 19142.251953125, 12404.2666015625, 36510.44921875 ], "wind_a": 0.0 }, "3856": { "creation_time": 3856, "p": [ 19141.744140625, 12407.990234375, 36588.89453125 ], "wind_a": 0.0 }, "3857": { "creation_time": 3857, "p": [ 19141.984375, 12406.22265625, 36666.51953125 ], "wind_a": 0.0 }, "3858": { "creation_time": 3858, "p": [ 19141.23828125, 12411.71484375, 36744.22265625 ], "wind_a": 0.0 }, "3859": { "creation_time": 3859, "p": [ 19139.716796875, 12422.88671875, 36819.5546875 ], "wind_a": 0.0 }, "3860": { "creation_time": 3860, "p": [ 19138.703125, 12430.3349609375, 36896.44140625 ], "wind_a": 0.0 }, "3861": { "creation_time": 3861, "p": [ 19139.716796875, 12422.88671875, 36973.328125 ], "wind_a": 0.0 }, "3862": { "creation_time": 3862, "p": [ 19140.73046875, 12415.4384765625, 37050.2109375 ], "wind_a": 0.0 }, "3863": { "creation_time": 3863, "p": [ 19141.744140625, 12407.990234375, 37127.09765625 ], "wind_a": 0.0 }, "3864": { "creation_time": 3864, "p": [ 19142.251953125, 12404.2666015625, 37205.54296875 ], "wind_a": 0.0 }, "3865": { "creation_time": 3865, "p": [ 19141.23828125, 12411.71484375, 37282.4296875 ], "wind_a": 0.0 }, "3866": { "creation_time": 3866, "p": [ 19139.2109375, 12426.611328125, 37356.203125 ], "wind_a": 0.0 }, "3867": { "creation_time": 3867, "p": [ 19137.18359375, 12441.5078125, 37429.97265625 ], "wind_a": 0.0 }, "3868": { "creation_time": 3868, "p": [ 19136.67578125, 12445.2314453125, 37508.41796875 ], "wind_a": 0.0 }, "3869": { "creation_time": 3869, "p": [ 19138.40234375, 12432.552734375, 37583.1171875 ], "wind_a": 0.0 }, "3870": { "creation_time": 3870, "p": [ 19141.23828125, 12411.71484375, 37654.40625 ], "wind_a": 0.0 }, "3871": { "creation_time": 3871, "p": [ 19143.263671875, 12396.818359375, 37728.1796875 ], "wind_a": 0.0 }, "3872": { "creation_time": 3872, "p": [ 19144.27734375, 12389.3701171875, 37805.06640625 ], "wind_a": 0.0 }, "3873": { "creation_time": 3873, "p": [ 19144.27734375, 12389.3701171875, 37885.06640625 ], "wind_a": 0.0 }, "3874": { "creation_time": 3874, "p": [ 19144.27734375, 12389.3701171875, 37965.06640625 ], "wind_a": 0.0 }, "3875": { "creation_time": 3875, "p": [ 19144.78515625, 12385.646484375, 38043.5078125 ], "wind_a": 0.0 }, "3876": { "creation_time": 3876, "p": [ 19145.798828125, 12378.1982421875, 38120.39453125 ], "wind_a": 0.0 }, "3877": { "creation_time": 3877, "p": [ 19147.318359375, 12367.025390625, 38195.7265625 ], "wind_a": 0.0 }, "3878": { "creation_time": 3878, "p": [ 19148.83984375, 12355.853515625, 38271.0546875 ], "wind_a": 0.0 }, "3879": { "creation_time": 3879, "p": [ 19150.359375, 12344.681640625, 38346.3828125 ], "wind_a": 0.0 }, "3880": { "creation_time": 3880, "p": [ 19150.359375, 12344.681640625, 38426.3828125 ], "wind_a": 0.0 }, "3881": { "creation_time": 3881, "p": [ 19150.359375, 12344.681640625, 38506.3828125 ], "wind_a": 0.0 }, "3882": { "creation_time": 3882, "p": [ 19150.8671875, 12340.95703125, 38584.828125 ], "wind_a": 0.0 }, "3883": { "creation_time": 3883, "p": [ 19150.8671875, 12340.95703125, 38664.828125 ], "wind_a": 0.0 }, "3884": { "creation_time": 3884, "p": [ 19150.8671875, 12340.95703125, 38744.828125 ], "wind_a": 0.0 }, "3885": { "creation_time": 3885, "p": [ 19150.8671875, 12340.95703125, 38824.828125 ], "wind_a": 0.0 }, "3886": { "creation_time": 3886, "p": [ 19150.359375, 12344.681640625, 38903.26953125 ], "wind_a": 0.0 }, "3887": { "creation_time": 3887, "p": [ 19149.853515625, 12348.4052734375, 38981.71484375 ], "wind_a": 0.0 }, "3888": { "creation_time": 3888, "p": [ 19148.84375, 12355.818359375, 39058.6171875 ], "wind_a": 0.0 }, "3889": { "creation_time": 3889, "p": [ 19148.33203125, 12359.578125, 39137.04296875 ], "wind_a": 0.0 }, "3890": { "creation_time": 3890, "p": [ 19147.826171875, 12363.3017578125, 39215.48828125 ], "wind_a": 0.0 }, "3891": { "creation_time": 3891, "p": [ 19148.33203125, 12359.578125, 39293.9296875 ], "wind_a": 0.0 }, "3892": { "creation_time": 3892, "p": [ 19149.853515625, 12348.4052734375, 39369.26171875 ], "wind_a": 0.0 }, "3893": { "creation_time": 3893, "p": [ 19150.8671875, 12340.95703125, 39446.14453125 ], "wind_a": 0.0 }, "3894": { "creation_time": 3894, "p": [ 19150.8671875, 12340.95703125, 39526.1484375 ], "wind_a": 0.0 }, "3895": { "creation_time": 3895, "p": [ 19150.8671875, 12340.95703125, 39606.14453125 ], "wind_a": 0.0 }, "3896": { "creation_time": 3896, "p": [ 19149.853515625, 12348.4052734375, 39683.03125 ], "wind_a": 0.0 }, "3897": { "creation_time": 3897, "p": [ 19148.33203125, 12359.578125, 39758.36328125 ], "wind_a": 0.0 }, "3898": { "creation_time": 3898, "p": [ 19147.318359375, 12367.025390625, 39835.25 ], "wind_a": 0.0 }, "3899": { "creation_time": 3899, "p": [ 19146.3046875, 12374.4736328125, 39912.13671875 ], "wind_a": 0.0 }, "3900": { "creation_time": 3900, "p": [ 19145.455078125, 12380.720703125, 39989.5234375 ], "wind_a": 0.0 }, "3901": { "creation_time": 3901, "p": [ 19143.771484375, 12393.0947265625, 40064.3515625 ], "wind_a": 0.0 }, "3902": { "creation_time": 3902, "p": [ 19142.7578125, 12400.54296875, 40141.23828125 ], "wind_a": 0.0 }, "3903": { "creation_time": 3903, "p": [ 19141.23828125, 12411.71484375, 40216.56640625 ], "wind_a": 0.0 }, "3904": { "creation_time": 3904, "p": [ 19139.669921875, 12423.2294921875, 40291.75390625 ], "wind_a": 0.0 }, "3905": { "creation_time": 3905, "p": [ 19137.689453125, 12437.783203125, 40365.671875 ], "wind_a": 0.0 }, "3906": { "creation_time": 3906, "p": [ 19135.880859375, 12451.06640625, 40440.1171875 ], "wind_a": 0.0 }, "3907": { "creation_time": 3907, "p": [ 19134.6484375, 12460.1279296875, 40516.328125 ], "wind_a": 0.0 }, "3908": { "creation_time": 3908, "p": [ 19133.16796875, 12471.00390625, 40591.78125 ], "wind_a": 0.0 }, "3909": { "creation_time": 3909, "p": [ 19131.2734375, 12484.9228515625, 40665.96484375 ], "wind_a": 0.0 }, "3910": { "creation_time": 3910, "p": [ 19130.59375, 12489.919921875, 40697.31640625 ], "wind_a": 0.0 } } } } }, "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ], "vc3d_volume_shape_zyx": [ 18946, 8174, 8174 ] }, "format": "tifxyz", "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "lasagna_job": { "config": { "args": { "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "init-mode": "shell-dir-crop", "mesh-step": 50.0, "model-h": 5000.0, "model-init": "seed", "model-w": 5000.0, "model-w-unit": "voxels", "seed": [ 4787.716796875, 3085.2392578125, 9666.20703125 ], "tifxyz-flow-gate-channels": true, "windings": 1 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "2636": { "color": [ 0.0, 1.0, 0.27450981736183167 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap1020", "points": { "3855": { "creation_time": 3855, "p": [ 4785.56298828125, 3101.066650390625, 9127.6123046875 ], "wind_a": 0.0 }, "3856": { "creation_time": 3856, "p": [ 4785.43603515625, 3101.99755859375, 9147.2236328125 ], "wind_a": 0.0 }, "3857": { "creation_time": 3857, "p": [ 4785.49609375, 3101.5556640625, 9166.6298828125 ], "wind_a": 0.0 }, "3858": { "creation_time": 3858, "p": [ 4785.3095703125, 3102.9287109375, 9186.0556640625 ], "wind_a": 0.0 }, "3859": { "creation_time": 3859, "p": [ 4784.92919921875, 3105.7216796875, 9204.888671875 ], "wind_a": 0.0 }, "3860": { "creation_time": 3860, "p": [ 4784.67578125, 3107.583740234375, 9224.1103515625 ], "wind_a": 0.0 }, "3861": { "creation_time": 3861, "p": [ 4784.92919921875, 3105.7216796875, 9243.33203125 ], "wind_a": 0.0 }, "3862": { "creation_time": 3862, "p": [ 4785.1826171875, 3103.859619140625, 9262.552734375 ], "wind_a": 0.0 }, "3863": { "creation_time": 3863, "p": [ 4785.43603515625, 3101.99755859375, 9281.7744140625 ], "wind_a": 0.0 }, "3864": { "creation_time": 3864, "p": [ 4785.56298828125, 3101.066650390625, 9301.3857421875 ], "wind_a": 0.0 }, "3865": { "creation_time": 3865, "p": [ 4785.3095703125, 3102.9287109375, 9320.607421875 ], "wind_a": 0.0 }, "3866": { "creation_time": 3866, "p": [ 4784.802734375, 3106.65283203125, 9339.05078125 ], "wind_a": 0.0 }, "3867": { "creation_time": 3867, "p": [ 4784.2958984375, 3110.376953125, 9357.4931640625 ], "wind_a": 0.0 }, "3868": { "creation_time": 3868, "p": [ 4784.1689453125, 3111.307861328125, 9377.1044921875 ], "wind_a": 0.0 }, "3869": { "creation_time": 3869, "p": [ 4784.6005859375, 3108.13818359375, 9395.779296875 ], "wind_a": 0.0 }, "3870": { "creation_time": 3870, "p": [ 4785.3095703125, 3102.9287109375, 9413.6015625 ], "wind_a": 0.0 }, "3871": { "creation_time": 3871, "p": [ 4785.81591796875, 3099.20458984375, 9432.044921875 ], "wind_a": 0.0 }, "3872": { "creation_time": 3872, "p": [ 4786.0693359375, 3097.342529296875, 9451.2666015625 ], "wind_a": 0.0 }, "3873": { "creation_time": 3873, "p": [ 4786.0693359375, 3097.342529296875, 9471.2666015625 ], "wind_a": 0.0 }, "3874": { "creation_time": 3874, "p": [ 4786.0693359375, 3097.342529296875, 9491.2666015625 ], "wind_a": 0.0 }, "3875": { "creation_time": 3875, "p": [ 4786.1962890625, 3096.41162109375, 9510.876953125 ], "wind_a": 0.0 }, "3876": { "creation_time": 3876, "p": [ 4786.44970703125, 3094.549560546875, 9530.0986328125 ], "wind_a": 0.0 }, "3877": { "creation_time": 3877, "p": [ 4786.82958984375, 3091.75634765625, 9548.931640625 ], "wind_a": 0.0 }, "3878": { "creation_time": 3878, "p": [ 4787.2099609375, 3088.96337890625, 9567.763671875 ], "wind_a": 0.0 }, "3879": { "creation_time": 3879, "p": [ 4787.58984375, 3086.17041015625, 9586.595703125 ], "wind_a": 0.0 }, "3880": { "creation_time": 3880, "p": [ 4787.58984375, 3086.17041015625, 9606.595703125 ], "wind_a": 0.0 }, "3881": { "creation_time": 3881, "p": [ 4787.58984375, 3086.17041015625, 9626.595703125 ], "wind_a": 0.0 }, "3882": { "creation_time": 3882, "p": [ 4787.716796875, 3085.2392578125, 9646.20703125 ], "wind_a": 0.0 }, "3883": { "creation_time": 3883, "p": [ 4787.716796875, 3085.2392578125, 9666.20703125 ], "wind_a": 0.0 }, "3884": { "creation_time": 3884, "p": [ 4787.716796875, 3085.2392578125, 9686.20703125 ], "wind_a": 0.0 }, "3885": { "creation_time": 3885, "p": [ 4787.716796875, 3085.2392578125, 9706.20703125 ], "wind_a": 0.0 }, "3886": { "creation_time": 3886, "p": [ 4787.58984375, 3086.17041015625, 9725.8173828125 ], "wind_a": 0.0 }, "3887": { "creation_time": 3887, "p": [ 4787.46337890625, 3087.101318359375, 9745.4287109375 ], "wind_a": 0.0 }, "3888": { "creation_time": 3888, "p": [ 4787.2109375, 3088.95458984375, 9764.654296875 ], "wind_a": 0.0 }, "3889": { "creation_time": 3889, "p": [ 4787.0830078125, 3089.89453125, 9784.2607421875 ], "wind_a": 0.0 }, "3890": { "creation_time": 3890, "p": [ 4786.95654296875, 3090.825439453125, 9803.8720703125 ], "wind_a": 0.0 }, "3891": { "creation_time": 3891, "p": [ 4787.0830078125, 3089.89453125, 9823.482421875 ], "wind_a": 0.0 }, "3892": { "creation_time": 3892, "p": [ 4787.46337890625, 3087.101318359375, 9842.3154296875 ], "wind_a": 0.0 }, "3893": { "creation_time": 3893, "p": [ 4787.716796875, 3085.2392578125, 9861.5361328125 ], "wind_a": 0.0 }, "3894": { "creation_time": 3894, "p": [ 4787.716796875, 3085.2392578125, 9881.537109375 ], "wind_a": 0.0 }, "3895": { "creation_time": 3895, "p": [ 4787.716796875, 3085.2392578125, 9901.5361328125 ], "wind_a": 0.0 }, "3896": { "creation_time": 3896, "p": [ 4787.46337890625, 3087.101318359375, 9920.7578125 ], "wind_a": 0.0 }, "3897": { "creation_time": 3897, "p": [ 4787.0830078125, 3089.89453125, 9939.5908203125 ], "wind_a": 0.0 }, "3898": { "creation_time": 3898, "p": [ 4786.82958984375, 3091.75634765625, 9958.8125 ], "wind_a": 0.0 }, "3899": { "creation_time": 3899, "p": [ 4786.576171875, 3093.618408203125, 9978.0341796875 ], "wind_a": 0.0 }, "3900": { "creation_time": 3900, "p": [ 4786.36376953125, 3095.18017578125, 9997.380859375 ], "wind_a": 0.0 }, "3901": { "creation_time": 3901, "p": [ 4785.94287109375, 3098.273681640625, 10016.087890625 ], "wind_a": 0.0 }, "3902": { "creation_time": 3902, "p": [ 4785.689453125, 3100.1357421875, 10035.3095703125 ], "wind_a": 0.0 }, "3903": { "creation_time": 3903, "p": [ 4785.3095703125, 3102.9287109375, 10054.1416015625 ], "wind_a": 0.0 }, "3904": { "creation_time": 3904, "p": [ 4784.91748046875, 3105.807373046875, 10072.9384765625 ], "wind_a": 0.0 }, "3905": { "creation_time": 3905, "p": [ 4784.42236328125, 3109.44580078125, 10091.41796875 ], "wind_a": 0.0 }, "3906": { "creation_time": 3906, "p": [ 4783.97021484375, 3112.7666015625, 10110.029296875 ], "wind_a": 0.0 }, "3907": { "creation_time": 3907, "p": [ 4783.662109375, 3115.031982421875, 10129.08203125 ], "wind_a": 0.0 }, "3908": { "creation_time": 3908, "p": [ 4783.2919921875, 3117.7509765625, 10147.9453125 ], "wind_a": 0.0 }, "3909": { "creation_time": 3909, "p": [ 4782.818359375, 3121.230712890625, 10166.4912109375 ], "wind_a": 0.0 }, "3910": { "creation_time": 3910, "p": [ 4782.6484375, 3122.47998046875, 10174.3291015625 ], "wind_a": 0.0 } } } } }, "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ] }, "linked_surfaces": [], "model": null, "volume_shape_zyx": [ 18946, 8174, 8174 ] }, "model_source": "/tmp/fit_reopt_sq61yeu7/model_reopt.pt", "scale": [ 0.07999999821186066, 0.07999999821186066 ], "tags": { "date_last_modified": "20260614185644241", "reviewed": { "date": "20260604080934211" } }, "type": "seg", "uuid": "same_wrap001020_lasagna" }