{ "area_vx2": 925156.25, "base_shape_zyx": [ 18946, 8174, 8174 ], "bbox": [ [ 3722.408447265625, 2619.24755859375, 7718.72216796875 ], [ 4672.25390625, 3546.74072265625, 8272.912109375 ] ], "extra_channels": [ { "dtype": "float32", "file": "flow_gate_local_contrast.tif", "name": "flow_gate_local_contrast", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.local_contrast", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } }, { "dtype": "float32", "file": "flow_gate_component_normalized.tif", "name": "flow_gate_component_normalized", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.component_normalized", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } } ], "fit_config": { "_corr_point_roi_init_": { "effective_seed": [ 15459.1552734375, 10836.8369140625, 32000.0 ], "final_anchor_h": 186.1717362999916, "final_anchor_w": 48.74912792444229, "final_shell_id": "shell_0005.tifxyz", "final_trim_bottom": 12, "final_trim_top": 11, "init_margin_grid_points": 80, "initial_seed": [ 15657.046875, 11394.8671875, 32000.0 ], "initial_shell_id": "shell_0004.tifxyz", "initial_skipped_point_count": 0, "initial_skipped_reasons": {}, "initial_trim_bottom": 16, "initial_trim_top": 13, "initial_usable_point_count": 62, "mode": "corr-point-roi", "model_h": 8412.065887451172, "model_w": 9202.808380126953, "model_w_unit": "voxels", "output_radius_grid_points": 20, "parsed_point_count": 62, "projected_h_span_grid": 8.241317749023438, "projected_h_span_vx": 412.0658874511719, "projected_points": [ { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 11.74952783525133, "h": 186.58119201660156, "point_id": 67364, "row_index": 0, "w": 37.006736755371094 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 9.023272791723734, "h": 191.38040161132813, "point_id": 67365, "row_index": 1, "w": 56.117252349853516 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 9.657076172390544, "h": 191.7559051513672, "point_id": 67366, "row_index": 2, "w": 56.62797164916992 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 10.620263519124299, "h": 186.50218200683594, "point_id": 67367, "row_index": 3, "w": 38.13400650024414 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 5.6162495495599645, "h": 188.95176696777344, "point_id": 67368, "row_index": 4, "w": 53.62905502319336 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 9.85753274434684, "h": 186.50062561035156, "point_id": 67369, "row_index": 5, "w": 38.8970832824707 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 9.437189610649963, "h": 186.49990844726563, "point_id": 67370, "row_index": 6, "w": 39.31764602661133 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 9.021315856011967, "h": 186.47802734375, "point_id": 67371, "row_index": 7, "w": 39.73301315307617 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 8.619338114934456, "h": 186.44094848632813, "point_id": 67372, "row_index": 8, "w": 40.133995056152344 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 8.22911262842266, "h": 186.430419921875, "point_id": 67373, "row_index": 9, "w": 40.52408218383789 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 7.814730903264268, "h": 186.4223175048828, "point_id": 67374, "row_index": 10, "w": 40.93841552734375 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 2.7196505381370684, "h": 183.51458740234375, "point_id": 67375, "row_index": 11, "w": 48.1694221496582 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 2.2144211742198716, "h": 186.3929443359375, "point_id": 67376, "row_index": 12, "w": 50.95247268676758 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 2.213797697533596, "h": 186.39456176757813, "point_id": 67377, "row_index": 13, "w": 50.951683044433594 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 6.08291005536304, "h": 186.23033142089844, "point_id": 67378, "row_index": 14, "w": 42.666500091552734 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 5.657593478072415, "h": 186.19700622558594, "point_id": 67379, "row_index": 15, "w": 43.091590881347656 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 5.2520266033563905, "h": 186.2159881591797, "point_id": 67380, "row_index": 16, "w": 43.49728775024414 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 4.905546335706355, "h": 186.26454162597656, "point_id": 67381, "row_index": 17, "w": 43.844459533691406 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 4.5311427180149755, "h": 186.29371643066406, "point_id": 67382, "row_index": 18, "w": 44.219627380371094 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 4.163959707318109, "h": 186.32005310058594, "point_id": 67383, "row_index": 19, "w": 44.58781051635742 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 3.7845156742028374, "h": 186.3406524658203, "point_id": 67384, "row_index": 20, "w": 44.9683837890625 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 4.975104240384054, "h": 189.4366455078125, "point_id": 67385, "row_index": 21, "w": 52.5030632019043 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 2.9910240427555417, "h": 186.3636474609375, "point_id": 67386, "row_index": 22, "w": 45.76426696777344 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 2.710090965089023, "h": 186.37750244140625, "point_id": 67387, "row_index": 23, "w": 46.04685974121094 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 2.472693311257854, "h": 186.3999786376953, "point_id": 67388, "row_index": 24, "w": 46.286991119384766 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 2.134418900245268, "h": 186.37913513183594, "point_id": 67389, "row_index": 25, "w": 46.62480926513672 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 1.7314725197275196, "h": 186.32144165039063, "point_id": 67390, "row_index": 26, "w": 47.024139404296875 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 1.3018763036944971, "h": 186.2497100830078, "point_id": 67391, "row_index": 27, "w": 47.449588775634766 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 0.8593877713845093, "h": 186.2318572998047, "point_id": 67392, "row_index": 28, "w": 47.891845703125 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 0.41799330141446794, "h": 186.2071533203125, "point_id": 67393, "row_index": 29, "w": 48.332637786865234 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 0.023854826270937473, "h": 186.1833953857422, "point_id": 67394, "row_index": 30, "w": 48.76993942260742 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 0.4592544373630909, "h": 186.1840362548828, "point_id": 67395, "row_index": 31, "w": 49.20821762084961 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 0.9612883214267486, "h": 186.1808624267578, "point_id": 67396, "row_index": 32, "w": 49.71037292480469 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 1.5721020756452317, "h": 186.1905517578125, "point_id": 67397, "row_index": 33, "w": 50.32111740112305 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 1.9847428613159135, "h": 186.2345733642578, "point_id": 67398, "row_index": 34, "w": 50.73287582397461 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 2.399969463897856, "h": 186.27520751953125, "point_id": 67399, "row_index": 35, "w": 51.14686584472656 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 2.7662922017755234, "h": 187.37213134765625, "point_id": 67400, "row_index": 36, "w": 46.25685501098633 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 3.1648096678257405, "h": 186.3682098388672, "point_id": 67401, "row_index": 37, "w": 51.907833099365234 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 2.464285765909171, "h": 187.16709899902344, "point_id": 67402, "row_index": 38, "w": 46.494808197021484 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 3.9585392644235355, "h": 186.49166870117188, "point_id": 67403, "row_index": 39, "w": 52.69471740722656 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 4.354932327192992, "h": 186.54763793945313, "point_id": 67404, "row_index": 40, "w": 53.087806701660156 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 4.7495682906868755, "h": 186.6041259765625, "point_id": 67405, "row_index": 41, "w": 53.478973388671875 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 5.145213901385047, "h": 186.65158081054688, "point_id": 67406, "row_index": 42, "w": 53.871917724609375 }, { "collection_id": 1314, "direction_sign": 1, "grid_distance_to_anchor": 3.177652331066531, "h": 187.8258514404297, "point_id": 67407, "row_index": 43, "w": 46.03594207763672 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 5.936613546420062, "h": 186.73963928222656, "point_id": 67408, "row_index": 44, "w": 54.65851593017578 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 6.320164762214914, "h": 186.7628631591797, "point_id": 67409, "row_index": 45, "w": 55.041587829589844 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 6.689910161840143, "h": 186.78321838378906, "point_id": 67410, "row_index": 46, "w": 55.411033630371094 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 7.048820756735055, "h": 186.79727172851563, "point_id": 67411, "row_index": 47, "w": 55.770137786865234 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 7.418152241675957, "h": 186.84239196777344, "point_id": 67412, "row_index": 48, "w": 56.13690185546875 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 7.804758412832782, "h": 186.8921661376953, "point_id": 67413, "row_index": 49, "w": 56.520565032958984 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 8.187888008867224, "h": 186.93670654296875, "point_id": 67414, "row_index": 50, "w": 56.90120315551758 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 8.572968171965847, "h": 186.98129272460938, "point_id": 67415, "row_index": 51, "w": 57.28378677368164 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 8.956171003640325, "h": 187.03323364257813, "point_id": 67416, "row_index": 52, "w": 57.66376876831055 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 9.337890979048742, "h": 187.0707244873047, "point_id": 67417, "row_index": 53, "w": 58.043643951416016 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 9.735407619251665, "h": 187.12112426757813, "point_id": 67418, "row_index": 54, "w": 58.438133239746094 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 10.122394357474743, "h": 187.16510009765625, "point_id": 67419, "row_index": 55, "w": 58.822662353515625 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 10.50275222479218, "h": 187.2025909423828, "point_id": 67420, "row_index": 56, "w": 59.201168060302734 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 10.888379461512017, "h": 187.25628662109375, "point_id": 67421, "row_index": 57, "w": 59.58335876464844 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 11.273436532364657, "h": 187.2911834716797, "point_id": 67422, "row_index": 58, "w": 59.96684646606445 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 11.654239597335216, "h": 187.3203582763672, "point_id": 67423, "row_index": 59, "w": 60.34662628173828 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 12.04229968184402, "h": 187.3535614013672, "point_id": 67424, "row_index": 60, "w": 60.73329544067383 }, { "collection_id": 1314, "direction_sign": -1, "grid_distance_to_anchor": 12.373131839012544, "h": 187.38223266601563, "point_id": 67425, "row_index": 61, "w": 61.062904357910156 } ], "projected_w_span_grid": 24.056167602539063, "projected_w_span_vx": 1202.8083801269531, "projection_mode": "normal-line", "skipped_point_count": 0, "skipped_points": [], "skipped_reasons": {}, "usable_point_count": 62, "windings": 1 }, "args": { "approval-inpaint": false, "approval-inpaint-corr-spacing": null, "approval-inpaint-output-mask": false, "approval-inpaint-output-mask-dilate": 3, "approval-inpaint-padding-frac": 0.25, "approval-inpaint-tifxyz": null, "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "crop": null, "cuda-gridsample": 1, "depth": 1, "device": "cuda", "downscale": 4.0, "erode-valid-mask": 0, "flatten-solver": "torch", "init-mode": "shell-dir-crop", "input": "/ephemeral/lasag_strip_outputs/.lasagna_point_strip_work/collection_1314/point_strip.lasagna.json", "mesh-h": 32, "mesh-step": 50, "mesh-w": 32, "model-h": 8412.065887451172, "model-init": "seed", "model-input": null, "model-output": "/tmp/fit_reopt_h8md1jtu/model_reopt.pt", "model-w": 9202.808380126953, "model-w-unit": "voxels", "normal-mask-zero": 0, "out-dir": null, "progress": true, "pyramid-d": false, "seed": [ 15459.1552734375, 10836.8369140625, 32000.0 ], "snapshot-interval": 1000, "sparse-prefetch-backend": "tensorstore", "subsample-mesh": 4, "subsample-winding": 4, "tifxyz-flow-gate-channels": true, "tifxyz-init": null, "winding-step": 25, "winding-volume": null, "windings": 1, "z-center": 0.0 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "1314": { "color": [ 1.0, 0.1568627506494522, 0.1568627506494522 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap1404", "points": { "67364": { "creation_time": 1779509872834, "p": [ 15703.427734375, 13097.232421875, 32000.0 ], "wind_a": 0.0 }, "67365": { "creation_time": 1779509872847, "p": [ 15709.611328125, 13019.794921875, 32000.0 ], "wind_a": 0.0 }, "67366": { "creation_time": 1779509872857, "p": [ 15709.611328125, 12939.794921875, 32000.0 ], "wind_a": 0.0 }, "67367": { "creation_time": 1779509872865, "p": [ 15703.51171875, 12862.3212890625, 32000.0 ], "wind_a": 0.0 }, "67368": { "creation_time": 1779509872872, "p": [ 15687.966796875, 12788.759765625, 32000.0 ], "wind_a": 0.0 }, "67369": { "creation_time": 1779509872880, "p": [ 15673.4580078125, 12714.76953125, 32000.0 ], "wind_a": 0.0 }, "67370": { "creation_time": 1779509872887, "p": [ 15663.23046875, 12639.005859375, 32000.0 ], "wind_a": 0.0 }, "67371": { "creation_time": 1779509872893, "p": [ 15657.046875, 12561.5673828125, 32000.0 ], "wind_a": 0.0 }, "67372": { "creation_time": 1779509872900, "p": [ 15650.8623046875, 12484.12890625, 32000.0 ], "wind_a": 0.0 }, "67373": { "creation_time": 1779509872907, "p": [ 15644.6787109375, 12406.6904296875, 32000.0 ], "wind_a": 0.0 }, "67374": { "creation_time": 1779509872915, "p": [ 15638.494140625, 12329.251953125, 32000.0 ], "wind_a": 0.0 }, "67375": { "creation_time": 1779509872923, "p": [ 15638.494140625, 12249.251953125, 32000.0 ], "wind_a": 0.0 }, "67376": { "creation_time": 1779509872928, "p": [ 15638.494140625, 12169.251953125, 32000.0 ], "wind_a": 0.0 }, "67377": { "creation_time": 1779509872934, "p": [ 15638.494140625, 12089.251953125, 32000.0 ], "wind_a": 0.0 }, "67378": { "creation_time": 1779509872941, "p": [ 15641.5859375, 12010.533203125, 32000.0 ], "wind_a": 0.0 }, "67379": { "creation_time": 1779509872948, "p": [ 15653.9541015625, 11935.65625, 32000.0 ], "wind_a": 0.0 }, "67380": { "creation_time": 1779509872954, "p": [ 15666.0625, 11860.671875, 32000.0 ], "wind_a": 0.0 }, "67381": { "creation_time": 1779509872960, "p": [ 15672.5068359375, 11783.3408203125, 32000.0 ], "wind_a": 0.0 }, "67382": { "creation_time": 1779509872967, "p": [ 15678.69140625, 11705.90234375, 32000.0 ], "wind_a": 0.0 }, "67383": { "creation_time": 1779509872974, "p": [ 15672.5068359375, 11628.4638671875, 32000.0 ], "wind_a": 0.0 }, "67384": { "creation_time": 1779509872981, "p": [ 15666.322265625, 11551.025390625, 32000.0 ], "wind_a": 0.0 }, "67385": { "creation_time": 1779509872987, "p": [ 15660.138671875, 11473.5869140625, 32000.0 ], "wind_a": 0.0 }, "67386": { "creation_time": 1779509872993, "p": [ 15657.046875, 11394.8671875, 32000.0 ], "wind_a": 0.0 }, "67387": { "creation_time": 1779509873000, "p": [ 15644.6787109375, 11319.990234375, 32000.0 ], "wind_a": 0.0 }, "67388": { "creation_time": 1779509873006, "p": [ 15619.2060546875, 11250.541015625, 32000.0 ], "wind_a": 0.0 }, "67389": { "creation_time": 1779509873012, "p": [ 15584.501953125, 11184.916015625, 32000.0 ], "wind_a": 0.0 }, "67390": { "creation_time": 1779509873017, "p": [ 15541.0517578125, 11122.9140625, 32000.0 ], "wind_a": 0.0 }, "67391": { "creation_time": 1779509873021, "p": [ 15504.1611328125, 11058.1953125, 32000.0 ], "wind_a": 0.0 }, "67392": { "creation_time": 1779509873026, "p": [ 15477.70703125, 10989.15234375, 32000.0 ], "wind_a": 0.0 }, "67393": { "creation_time": 1779509873030, "p": [ 15465.3388671875, 10914.275390625, 32000.0 ], "wind_a": 0.0 }, "67394": { "creation_time": 1779509873035, "p": [ 15459.1552734375, 10836.8369140625, 32000.0 ], "wind_a": 0.0 }, "67395": { "creation_time": 1779509873043, "p": [ 15459.1552734375, 10759.3984375, 32000.0 ], "wind_a": 0.0 }, "67396": { "creation_time": 1779509873051, "p": [ 15478.7265625, 10687.5048828125, 32000.0 ], "wind_a": 0.0 }, "67397": { "creation_time": 1779509873056, "p": [ 15539.9365234375, 10642.142578125, 32000.0 ], "wind_a": 0.0 }, "67398": { "creation_time": 1779509873066, "p": [ 15616.09375, 10639.05078125, 32000.0 ], "wind_a": 0.0 }, "67399": { "creation_time": 1779509873074, "p": [ 15694.8134765625, 10642.142578125, 32000.0 ], "wind_a": 0.0 }, "67400": { "creation_time": 1779509873081, "p": [ 15772.017578125, 10648.892578125, 32000.0 ], "wind_a": 0.0 }, "67401": { "creation_time": 1779509873086, "p": [ 15850.970703125, 10651.4189453125, 32000.0 ], "wind_a": 0.0 }, "67402": { "creation_time": 1779509873091, "p": [ 15928.4091796875, 10645.234375, 32000.0 ], "wind_a": 0.0 }, "67403": { "creation_time": 1779509873095, "p": [ 16005.84765625, 10651.4189453125, 32000.0 ], "wind_a": 0.0 }, "67404": { "creation_time": 1779509873103, "p": [ 16084.5673828125, 10654.5107421875, 32000.0 ], "wind_a": 0.0 }, "67405": { "creation_time": 1779509873110, "p": [ 16163.2861328125, 10657.603515625, 32000.0 ], "wind_a": 0.0 }, "67406": { "creation_time": 1779509873120, "p": [ 16242.005859375, 10660.6953125, 32000.0 ], "wind_a": 0.0 }, "67407": { "creation_time": 1779509873127, "p": [ 16319.4443359375, 10666.87890625, 32000.0 ], "wind_a": 0.0 }, "67408": { "creation_time": 1779509873135, "p": [ 16395.6015625, 10676.1552734375, 32000.0 ], "wind_a": 0.0 }, "67409": { "creation_time": 1779509873140, "p": [ 16467.91796875, 10694.70703125, 32000.0 ], "wind_a": 0.0 }, "67410": { "creation_time": 1779509873148, "p": [ 16540.232421875, 10713.259765625, 32000.0 ], "wind_a": 0.0 }, "67411": { "creation_time": 1779509873156, "p": [ 16611.625, 10734.0390625, 32000.0 ], "wind_a": 0.0 }, "67412": { "creation_time": 1779509873163, "p": [ 16686.14453125, 10747.2724609375, 32000.0 ], "wind_a": 0.0 }, "67413": { "creation_time": 1779509873170, "p": [ 16762.798828125, 10755.3466796875, 32000.0 ], "wind_a": 0.0 }, "67414": { "creation_time": 1779509873178, "p": [ 16838.458984375, 10765.8251953125, 32000.0 ], "wind_a": 0.0 }, "67415": { "creation_time": 1779509873184, "p": [ 16914.6171875, 10775.1015625, 32000.0 ], "wind_a": 0.0 }, "67416": { "creation_time": 1779509873191, "p": [ 16992.0546875, 10781.28515625, 32000.0 ], "wind_a": 0.0 }, "67417": { "creation_time": 1779509873198, "p": [ 17068.212890625, 10790.5615234375, 32000.0 ], "wind_a": 0.0 }, "67418": { "creation_time": 1779509873205, "p": [ 17146.16796875, 10795.498046875, 32000.0 ], "wind_a": 0.0 }, "67419": { "creation_time": 1779509873212, "p": [ 17223.08984375, 10802.9296875, 32000.0 ], "wind_a": 0.0 }, "67420": { "creation_time": 1779509873223, "p": [ 17297.966796875, 10815.2978515625, 32000.0 ], "wind_a": 0.0 }, "67421": { "creation_time": 1779509873231, "p": [ 17375.40625, 10821.482421875, 32000.0 ], "wind_a": 0.0 }, "67422": { "creation_time": 1779509873239, "p": [ 17451.5625, 10830.7578125, 32000.0 ], "wind_a": 0.0 }, "67423": { "creation_time": 1779509873246, "p": [ 17526.439453125, 10843.1259765625, 32000.0 ], "wind_a": 0.0 }, "67424": { "creation_time": 1779509873254, "p": [ 17602.408203125, 10852.861328125, 32000.0 ], "wind_a": 0.0 }, "67425": { "creation_time": 1779509873260, "p": [ 17666.880859375, 10861.6787109375, 32000.0 ], "wind_a": 0.0 } } } } }, "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ], "vc3d_volume_shape_zyx": [ 18946, 8174, 8174 ] }, "format": "tifxyz", "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "lasagna_job": { "config": { "args": { "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "init-mode": "shell-dir-crop", "mesh-step": 50.0, "model-h": 5000.0, "model-init": "seed", "model-w": 5000.0, "model-w-unit": "voxels", "seed": [ 3864.788818359375, 2689.849609375, 8000.0 ], "tifxyz-flow-gate-channels": true, "windings": 1 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "1314": { "color": [ 1.0, 0.1568627506494522, 0.1568627506494522 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap1404", "points": { "67364": { "creation_time": 1779509872834, "p": [ 3925.85693359375, 3274.30810546875, 8000.0 ], "wind_a": 0.0 }, "67365": { "creation_time": 1779509872847, "p": [ 3927.40283203125, 3254.94873046875, 8000.0 ], "wind_a": 0.0 }, "67366": { "creation_time": 1779509872857, "p": [ 3927.40283203125, 3234.94873046875, 8000.0 ], "wind_a": 0.0 }, "67367": { "creation_time": 1779509872865, "p": [ 3925.8779296875, 3215.580322265625, 8000.0 ], "wind_a": 0.0 }, "67368": { "creation_time": 1779509872872, "p": [ 3921.99169921875, 3197.18994140625, 8000.0 ], "wind_a": 0.0 }, "67369": { "creation_time": 1779509872880, "p": [ 3918.364501953125, 3178.6923828125, 8000.0 ], "wind_a": 0.0 }, "67370": { "creation_time": 1779509872887, "p": [ 3915.8076171875, 3159.75146484375, 8000.0 ], "wind_a": 0.0 }, "67371": { "creation_time": 1779509872893, "p": [ 3914.26171875, 3140.391845703125, 8000.0 ], "wind_a": 0.0 }, "67372": { "creation_time": 1779509872900, "p": [ 3912.715576171875, 3121.0322265625, 8000.0 ], "wind_a": 0.0 }, "67373": { "creation_time": 1779509872907, "p": [ 3911.169677734375, 3101.672607421875, 8000.0 ], "wind_a": 0.0 }, "67374": { "creation_time": 1779509872915, "p": [ 3909.62353515625, 3082.31298828125, 8000.0 ], "wind_a": 0.0 }, "67375": { "creation_time": 1779509872923, "p": [ 3909.62353515625, 3062.31298828125, 8000.0 ], "wind_a": 0.0 }, "67376": { "creation_time": 1779509872928, "p": [ 3909.62353515625, 3042.31298828125, 8000.0 ], "wind_a": 0.0 }, "67377": { "creation_time": 1779509872934, "p": [ 3909.62353515625, 3022.31298828125, 8000.0 ], "wind_a": 0.0 }, "67378": { "creation_time": 1779509872941, "p": [ 3910.396484375, 3002.63330078125, 8000.0 ], "wind_a": 0.0 }, "67379": { "creation_time": 1779509872948, "p": [ 3913.488525390625, 2983.9140625, 8000.0 ], "wind_a": 0.0 }, "67380": { "creation_time": 1779509872954, "p": [ 3916.515625, 2965.16796875, 8000.0 ], "wind_a": 0.0 }, "67381": { "creation_time": 1779509872960, "p": [ 3918.126708984375, 2945.835205078125, 8000.0 ], "wind_a": 0.0 }, "67382": { "creation_time": 1779509872967, "p": [ 3919.6728515625, 2926.4755859375, 8000.0 ], "wind_a": 0.0 }, "67383": { "creation_time": 1779509872974, "p": [ 3918.126708984375, 2907.115966796875, 8000.0 ], "wind_a": 0.0 }, "67384": { "creation_time": 1779509872981, "p": [ 3916.58056640625, 2887.75634765625, 8000.0 ], "wind_a": 0.0 }, "67385": { "creation_time": 1779509872987, "p": [ 3915.03466796875, 2868.396728515625, 8000.0 ], "wind_a": 0.0 }, "67386": { "creation_time": 1779509872993, "p": [ 3914.26171875, 2848.716796875, 8000.0 ], "wind_a": 0.0 }, "67387": { "creation_time": 1779509873000, "p": [ 3911.169677734375, 2829.99755859375, 8000.0 ], "wind_a": 0.0 }, "67388": { "creation_time": 1779509873006, "p": [ 3904.801513671875, 2812.63525390625, 8000.0 ], "wind_a": 0.0 }, "67389": { "creation_time": 1779509873012, "p": [ 3896.12548828125, 2796.22900390625, 8000.0 ], "wind_a": 0.0 }, "67390": { "creation_time": 1779509873017, "p": [ 3885.262939453125, 2780.728515625, 8000.0 ], "wind_a": 0.0 }, "67391": { "creation_time": 1779509873021, "p": [ 3876.040283203125, 2764.548828125, 8000.0 ], "wind_a": 0.0 }, "67392": { "creation_time": 1779509873026, "p": [ 3869.4267578125, 2747.2880859375, 8000.0 ], "wind_a": 0.0 }, "67393": { "creation_time": 1779509873030, "p": [ 3866.334716796875, 2728.56884765625, 8000.0 ], "wind_a": 0.0 }, "67394": { "creation_time": 1779509873035, "p": [ 3864.788818359375, 2709.209228515625, 8000.0 ], "wind_a": 0.0 }, "67395": { "creation_time": 1779509873043, "p": [ 3864.788818359375, 2689.849609375, 8000.0 ], "wind_a": 0.0 }, "67396": { "creation_time": 1779509873051, "p": [ 3869.681640625, 2671.876220703125, 8000.0 ], "wind_a": 0.0 }, "67397": { "creation_time": 1779509873056, "p": [ 3884.984130859375, 2660.53564453125, 8000.0 ], "wind_a": 0.0 }, "67398": { "creation_time": 1779509873066, "p": [ 3904.0234375, 2659.7626953125, 8000.0 ], "wind_a": 0.0 }, "67399": { "creation_time": 1779509873074, "p": [ 3923.703369140625, 2660.53564453125, 8000.0 ], "wind_a": 0.0 }, "67400": { "creation_time": 1779509873081, "p": [ 3943.00439453125, 2662.22314453125, 8000.0 ], "wind_a": 0.0 }, "67401": { "creation_time": 1779509873086, "p": [ 3962.74267578125, 2662.854736328125, 8000.0 ], "wind_a": 0.0 }, "67402": { "creation_time": 1779509873091, "p": [ 3982.102294921875, 2661.30859375, 8000.0 ], "wind_a": 0.0 }, "67403": { "creation_time": 1779509873095, "p": [ 4001.4619140625, 2662.854736328125, 8000.0 ], "wind_a": 0.0 }, "67404": { "creation_time": 1779509873103, "p": [ 4021.141845703125, 2663.627685546875, 8000.0 ], "wind_a": 0.0 }, "67405": { "creation_time": 1779509873110, "p": [ 4040.821533203125, 2664.40087890625, 8000.0 ], "wind_a": 0.0 }, "67406": { "creation_time": 1779509873120, "p": [ 4060.50146484375, 2665.173828125, 8000.0 ], "wind_a": 0.0 }, "67407": { "creation_time": 1779509873127, "p": [ 4079.861083984375, 2666.7197265625, 8000.0 ], "wind_a": 0.0 }, "67408": { "creation_time": 1779509873135, "p": [ 4098.900390625, 2669.038818359375, 8000.0 ], "wind_a": 0.0 }, "67409": { "creation_time": 1779509873140, "p": [ 4116.9794921875, 2673.6767578125, 8000.0 ], "wind_a": 0.0 }, "67410": { "creation_time": 1779509873148, "p": [ 4135.05810546875, 2678.31494140625, 8000.0 ], "wind_a": 0.0 }, "67411": { "creation_time": 1779509873156, "p": [ 4152.90625, 2683.509765625, 8000.0 ], "wind_a": 0.0 }, "67412": { "creation_time": 1779509873163, "p": [ 4171.5361328125, 2686.818115234375, 8000.0 ], "wind_a": 0.0 }, "67413": { "creation_time": 1779509873170, "p": [ 4190.69970703125, 2688.836669921875, 8000.0 ], "wind_a": 0.0 }, "67414": { "creation_time": 1779509873178, "p": [ 4209.61474609375, 2691.456298828125, 8000.0 ], "wind_a": 0.0 }, "67415": { "creation_time": 1779509873184, "p": [ 4228.654296875, 2693.775390625, 8000.0 ], "wind_a": 0.0 }, "67416": { "creation_time": 1779509873191, "p": [ 4248.013671875, 2695.3212890625, 8000.0 ], "wind_a": 0.0 }, "67417": { "creation_time": 1779509873198, "p": [ 4267.05322265625, 2697.640380859375, 8000.0 ], "wind_a": 0.0 }, "67418": { "creation_time": 1779509873205, "p": [ 4286.5419921875, 2698.87451171875, 8000.0 ], "wind_a": 0.0 }, "67419": { "creation_time": 1779509873212, "p": [ 4305.7724609375, 2700.732421875, 8000.0 ], "wind_a": 0.0 }, "67420": { "creation_time": 1779509873223, "p": [ 4324.49169921875, 2703.824462890625, 8000.0 ], "wind_a": 0.0 }, "67421": { "creation_time": 1779509873231, "p": [ 4343.8515625, 2705.37060546875, 8000.0 ], "wind_a": 0.0 }, "67422": { "creation_time": 1779509873239, "p": [ 4362.890625, 2707.689453125, 8000.0 ], "wind_a": 0.0 }, "67423": { "creation_time": 1779509873246, "p": [ 4381.60986328125, 2710.781494140625, 8000.0 ], "wind_a": 0.0 }, "67424": { "creation_time": 1779509873254, "p": [ 4400.60205078125, 2713.21533203125, 8000.0 ], "wind_a": 0.0 }, "67425": { "creation_time": 1779509873260, "p": [ 4416.72021484375, 2715.419677734375, 8000.0 ], "wind_a": 0.0 } } } } }, "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ] }, "linked_surfaces": [], "model": null, "volume_shape_zyx": [ 18946, 8174, 8174 ] }, "model_source": "/tmp/fit_reopt_h8md1jtu/model_reopt.pt", "scale": [ 0.07999999821186066, 0.07999999821186066 ], "tags": { "date_last_modified": "20260614185644326", "reviewed": { "date": "20260604080934229" } }, "type": "seg", "uuid": "same_wrap001404_lasagna" }