{
    "area_vx2": 415781.25,
    "base_shape_zyx": [
        18946,
        8174,
        8174
    ],
    "bbox": [
        [
            4578.0751953125,
            3470.039794921875,
            8733.017578125
        ],
        [
            5027.52978515625,
            3777.892333984375,
            9281.171875
        ]
    ],
    "extra_channels": [
        {
            "dtype": "float32",
            "file": "flow_gate_local_contrast.tif",
            "name": "flow_gate_local_contrast",
            "range": [
                0.0,
                1.0
            ],
            "source": "pred_dt_flow_gate.local_contrast",
            "source_config": {
                "backtrack_distance": 50.0,
                "gate_factor": 1.0,
                "grid_step": 4,
                "local_boost": 0.5
            }
        },
        {
            "dtype": "float32",
            "file": "flow_gate_component_normalized.tif",
            "name": "flow_gate_component_normalized",
            "range": [
                0.0,
                1.0
            ],
            "source": "pred_dt_flow_gate.component_normalized",
            "source_config": {
                "backtrack_distance": 50.0,
                "gate_factor": 1.0,
                "grid_step": 4,
                "local_boost": 0.5
            }
        }
    ],
    "fit_config": {
        "_corr_point_roi_init_": {
            "effective_seed": [
                19756.205078125,
                14958.1474609375,
                36000.0
            ],
            "final_anchor_h": 195.82479435950518,
            "final_anchor_w": 16.094381637871265,
            "final_shell_id": "shell_0000.tifxyz",
            "final_trim_bottom": 28,
            "final_trim_top": 27,
            "init_margin_grid_points": 80,
            "initial_seed": [
                19850.99609375,
                15019.0078125,
                36000.0
            ],
            "initial_shell_id": "shell_0000.tifxyz",
            "initial_skipped_point_count": 0,
            "initial_skipped_reasons": {},
            "initial_trim_bottom": 28,
            "initial_trim_top": 27,
            "initial_usable_point_count": 17,
            "mode": "corr-point-roi",
            "model_h": 8473.908233642578,
            "model_w": 8966.862940788269,
            "model_w_unit": "voxels",
            "output_radius_grid_points": 20,
            "parsed_point_count": 17,
            "projected_h_span_grid": 9.478164672851563,
            "projected_h_span_vx": 473.9082336425781,
            "projected_points": [
                {
                    "collection_id": 2403,
                    "direction_sign": 1,
                    "grid_distance_to_anchor": 11.201124867101194,
                    "h": 203.88037109375,
                    "point_id": 76128,
                    "row_index": 0,
                    "w": 8.3115234375
                },
                {
                    "collection_id": 2403,
                    "direction_sign": 1,
                    "grid_distance_to_anchor": 5.566414169005039,
                    "h": 194.705078125,
                    "point_id": 76129,
                    "row_index": 1,
                    "w": 21.547014236450195
                },
                {
                    "collection_id": 2403,
                    "direction_sign": 1,
                    "grid_distance_to_anchor": 8.126589357087594,
                    "h": 196.70611572265625,
                    "point_id": 76130,
                    "row_index": 2,
                    "w": 24.17304039001465
                },
                {
                    "collection_id": 2403,
                    "direction_sign": 1,
                    "grid_distance_to_anchor": 9.399273514418432,
                    "h": 197.69879150390625,
                    "point_id": 76131,
                    "row_index": 3,
                    "w": 25.30494499206543
                },
                {
                    "collection_id": 2403,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 10.226129151075515,
                    "h": 194.40220642089844,
                    "point_id": 76132,
                    "row_index": 4,
                    "w": 5.967686176300049
                },
                {
                    "collection_id": 2403,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 7.470284029508502,
                    "h": 195.2654571533203,
                    "point_id": 76133,
                    "row_index": 5,
                    "w": 8.64506721496582
                },
                {
                    "collection_id": 2403,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 4.020097652526524,
                    "h": 195.1393585205078,
                    "point_id": 76134,
                    "row_index": 6,
                    "w": 12.133149147033691
                },
                {
                    "collection_id": 2403,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 2.2480025090025104,
                    "h": 195.3101806640625,
                    "point_id": 76135,
                    "row_index": 7,
                    "w": 13.906074523925781
                },
                {
                    "collection_id": 2403,
                    "direction_sign": 1,
                    "grid_distance_to_anchor": 1.4593466063117748,
                    "h": 195.3516845703125,
                    "point_id": 76136,
                    "row_index": 8,
                    "w": 14.713852882385254
                },
                {
                    "collection_id": 2403,
                    "direction_sign": 1,
                    "grid_distance_to_anchor": 0.7922185792591254,
                    "h": 195.50350952148438,
                    "point_id": 76137,
                    "row_index": 9,
                    "w": 15.37023639678955
                },
                {
                    "collection_id": 2403,
                    "direction_sign": 1,
                    "grid_distance_to_anchor": 0.6956474450987115,
                    "h": 195.15707397460938,
                    "point_id": 76138,
                    "row_index": 10,
                    "w": 15.899253845214844
                },
                {
                    "collection_id": 2403,
                    "direction_sign": 1,
                    "grid_distance_to_anchor": 0.6911595666087531,
                    "h": 195.28248596191406,
                    "point_id": 76139,
                    "row_index": 11,
                    "w": 16.522871017456055
                },
                {
                    "collection_id": 2403,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 1.1458891654007195,
                    "h": 195.0785675048828,
                    "point_id": 76140,
                    "row_index": 12,
                    "w": 16.9639835357666
                },
                {
                    "collection_id": 2403,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 1.5488718703943305,
                    "h": 195.03787231445313,
                    "point_id": 76141,
                    "row_index": 13,
                    "w": 17.428457260131836
                },
                {
                    "collection_id": 2403,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 2.090854600258429,
                    "h": 194.7550048828125,
                    "point_id": 76142,
                    "row_index": 14,
                    "w": 17.89082908630371
                },
                {
                    "collection_id": 2403,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 2.9475034425835442,
                    "h": 194.74771118164063,
                    "point_id": 76143,
                    "row_index": 15,
                    "w": 18.838041305541992
                },
                {
                    "collection_id": 2403,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 3.5565517041314667,
                    "h": 194.66253662109375,
                    "point_id": 76144,
                    "row_index": 16,
                    "w": 19.455663681030273
                }
            ],
            "projected_w_span_grid": 19.33725881576538,
            "projected_w_span_vx": 966.862940788269,
            "projection_mode": "normal-line",
            "skipped_point_count": 0,
            "skipped_points": [],
            "skipped_reasons": {},
            "usable_point_count": 17,
            "windings": 1
        },
        "args": {
            "approval-inpaint": false,
            "approval-inpaint-corr-spacing": null,
            "approval-inpaint-output-mask": false,
            "approval-inpaint-output-mask-dilate": 3,
            "approval-inpaint-padding-frac": 0.25,
            "approval-inpaint-tifxyz": null,
            "corr-point-roi": true,
            "corr-point-roi-init-margin": 80,
            "corr-point-roi-output-radius": 20,
            "crop": null,
            "cuda-gridsample": 1,
            "depth": 1,
            "device": "cuda",
            "downscale": 4.0,
            "erode-valid-mask": 0,
            "flatten-solver": "torch",
            "init-mode": "shell-dir-crop",
            "input": "/ephemeral/lasag_strip_outputs/.lasagna_point_strip_work/collection_2403/point_strip.lasagna.json",
            "mesh-h": 32,
            "mesh-step": 50,
            "mesh-w": 32,
            "model-h": 8473.908233642578,
            "model-init": "seed",
            "model-input": null,
            "model-output": "/tmp/fit_reopt_epftnaiv/model_reopt.pt",
            "model-w": 8966.862940788269,
            "model-w-unit": "voxels",
            "normal-mask-zero": 0,
            "out-dir": null,
            "progress": true,
            "pyramid-d": false,
            "seed": [
                19756.205078125,
                14958.1474609375,
                36000.0
            ],
            "snapshot-interval": 1000,
            "sparse-prefetch-backend": "tensorstore",
            "subsample-mesh": 4,
            "subsample-winding": 4,
            "tifxyz-flow-gate-channels": true,
            "tifxyz-init": null,
            "winding-step": 25,
            "winding-volume": null,
            "windings": 1,
            "z-center": 0.0
        },
        "base": {
            "bend": 100.0,
            "corr": 0.0001,
            "data": 0.0,
            "data_plain": 0.0,
            "ext_offset": 0.0,
            "normal": 1.0,
            "pred_dt": 0.001,
            "smooth": 10.0,
            "station_n": 0.1,
            "station_t": 0.1,
            "step": 10.0,
            "winding_density": 0.01
        },
        "corr_points": {
            "collections": {
                "2403": {
                    "color": [
                        0.47058823704719543,
                        0.3137255012989044,
                        1.0
                    ],
                    "metadata": {
                        "winding_is_absolute": true
                    },
                    "name": "same_wrap1683",
                    "points": {
                        "76128": {
                            "creation_time": 1779555030797,
                            "p": [
                                20378.736328125,
                                14608.318359375,
                                36000.0
                            ],
                            "wind_a": 0.0
                        },
                        "76129": {
                            "creation_time": 1779555030797,
                            "p": [
                                20395.39453125,
                                14721.41796875,
                                36000.0
                            ],
                            "wind_a": 0.0
                        },
                        "76130": {
                            "creation_time": 1779555030797,
                            "p": [
                                20389.841796875,
                                14839.1181640625,
                                36000.0
                            ],
                            "wind_a": 0.0
                        },
                        "76131": {
                            "creation_time": 1779555030797,
                            "p": [
                                20369.5234375,
                                14950.7021484375,
                                36000.0
                            ],
                            "wind_a": 0.0
                        },
                        "76132": {
                            "creation_time": 1779555030797,
                            "p": [
                                20328.76171875,
                                15053.8173828125,
                                36000.0
                            ],
                            "wind_a": 0.0
                        },
                        "76133": {
                            "creation_time": 1779555030797,
                            "p": [
                                20255.462890625,
                                15136.9501953125,
                                36000.0
                            ],
                            "wind_a": 0.0
                        },
                        "76134": {
                            "creation_time": 1779555030797,
                            "p": [
                                20148.802734375,
                                15169.1552734375,
                                36000.0
                            ],
                            "wind_a": 0.0
                        },
                        "76135": {
                            "creation_time": 1779555030797,
                            "p": [
                                20044.90234375,
                                15130.28515625,
                                36000.0
                            ],
                            "wind_a": 0.0
                        },
                        "76136": {
                            "creation_time": 1779555030797,
                            "p": [
                                19945.607421875,
                                15080.3017578125,
                                36000.0
                            ],
                            "wind_a": 0.0
                        },
                        "76137": {
                            "creation_time": 1779555030797,
                            "p": [
                                19850.99609375,
                                15019.0078125,
                                36000.0
                            ],
                            "wind_a": 0.0
                        },
                        "76138": {
                            "creation_time": 1779555030797,
                            "p": [
                                19756.205078125,
                                14958.1474609375,
                                36000.0
                            ],
                            "wind_a": 0.0
                        },
                        "76139": {
                            "creation_time": 1779555030797,
                            "p": [
                                19661.7734375,
                                14896.4189453125,
                                36000.0
                            ],
                            "wind_a": 0.0
                        },
                        "76140": {
                            "creation_time": 1779555030797,
                            "p": [
                                19567.162109375,
                                14835.125,
                                36000.0
                            ],
                            "wind_a": 0.0
                        },
                        "76141": {
                            "creation_time": 1779555030797,
                            "p": [
                                19469.806640625,
                                14780.45703125,
                                36000.0
                            ],
                            "wind_a": 0.0
                        },
                        "76142": {
                            "creation_time": 1779555030797,
                            "p": [
                                19371.43359375,
                                14728.2421875,
                                36000.0
                            ],
                            "wind_a": 0.0
                        },
                        "76143": {
                            "creation_time": 1779555030797,
                            "p": [
                                19275.197265625,
                                14670.875,
                                36000.0
                            ],
                            "wind_a": 0.0
                        },
                        "76144": {
                            "creation_time": 1779555030797,
                            "p": [
                                19212.640625,
                                14624.9765625,
                                36000.0
                            ],
                            "wind_a": 0.0
                        }
                    }
                }
            }
        },
        "lasagna_base_shape_zyx": [
            75784,
            32693,
            32693
        ],
        "stages": [
            {
                "lr": 0.1,
                "min_scaledown": 0,
                "name": "stage0",
                "params": [
                    "mesh_ms"
                ],
                "steps": 1000,
                "w_fac": {
                    "corr": 0.0,
                    "pred_dt": 0.0,
                    "station_n": 10.0,
                    "station_t": 10.0
                }
            },
            {
                "lr": 0.1,
                "min_scaledown": 0,
                "name": "stage1",
                "params": [
                    "mesh_ms"
                ],
                "steps": 1000,
                "w_fac": {
                    "pred_dt": 0.0,
                    "station_n": 10.0,
                    "station_t": 10.0
                }
            },
            {
                "lr": 0.01,
                "min_scaledown": 0,
                "name": "stage2",
                "params": [
                    "mesh_ms"
                ],
                "steps": 500,
                "w_fac": {
                    "pred_dt": 0.0,
                    "station_n": 10.0,
                    "station_t": 10.0
                }
            },
            {
                "_lr": [
                    10.0,
                    1.0,
                    0.1,
                    0.01,
                    0.001
                ],
                "args": {
                    "pred_dt_flow_gate": {
                        "anticipatory_pull": {
                            "_debug_roi_center_xyz": [
                                17499,
                                13412,
                                51144
                            ],
                            "debug_roi_k": 8,
                            "debug_roi_root_min": 0.5,
                            "debug_roi_tip_max": 0.5,
                            "debug_slice_upsample": 8,
                            "enabled": true,
                            "inlier_one": 120.0,
                            "inlier_zero": 80.0,
                            "loss_weight": 2.0,
                            "samples": 8
                        },
                        "backtrack_distance": 50.0,
                        "debug": false,
                        "debug_out_dir": "/home/ubuntu/villa/lasagna",
                        "debug_vis_interval": 0,
                        "enabled": true,
                        "gate_factor": 1.0,
                        "local_boost": 0.5
                    },
                    "status_interval": 10
                },
                "dlr": [
                    1.0,
                    0.1,
                    0.01,
                    0.001,
                    0.0001
                ],
                "lr": 1.0,
                "min_scaledown": 0,
                "name": "snap",
                "params": [
                    "mesh_ms"
                ],
                "steps": 500
            }
        ],
        "vc3d_volume_shape_zyx": [
            18946,
            8174,
            8174
        ]
    },
    "format": "tifxyz",
    "lasagna_base_shape_zyx": [
        75784,
        32693,
        32693
    ],
    "lasagna_job": {
        "config": {
            "args": {
                "corr-point-roi": true,
                "corr-point-roi-init-margin": 80,
                "corr-point-roi-output-radius": 20,
                "init-mode": "shell-dir-crop",
                "mesh-step": 50.0,
                "model-h": 5000.0,
                "model-init": "seed",
                "model-w": 5000.0,
                "model-w-unit": "voxels",
                "seed": [
                    4986.40185546875,
                    3770.075439453125,
                    9000.0
                ],
                "tifxyz-flow-gate-channels": true,
                "windings": 1
            },
            "base": {
                "bend": 100.0,
                "corr": 0.0001,
                "data": 0.0,
                "data_plain": 0.0,
                "ext_offset": 0.0,
                "normal": 1.0,
                "pred_dt": 0.001,
                "smooth": 10.0,
                "station_n": 0.1,
                "station_t": 0.1,
                "step": 10.0,
                "winding_density": 0.01
            },
            "corr_points": {
                "collections": {
                    "2403": {
                        "color": [
                            0.47058823704719543,
                            0.3137255012989044,
                            1.0
                        ],
                        "metadata": {
                            "winding_is_absolute": true
                        },
                        "name": "same_wrap1683",
                        "points": {
                            "76128": {
                                "creation_time": 1779555030797,
                                "p": [
                                    5094.68408203125,
                                    3652.07958984375,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            },
                            "76129": {
                                "creation_time": 1779555030797,
                                "p": [
                                    5098.8486328125,
                                    3680.3544921875,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            },
                            "76130": {
                                "creation_time": 1779555030797,
                                "p": [
                                    5097.46044921875,
                                    3709.779541015625,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            },
                            "76131": {
                                "creation_time": 1779555030797,
                                "p": [
                                    5092.380859375,
                                    3737.675537109375,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            },
                            "76132": {
                                "creation_time": 1779555030797,
                                "p": [
                                    5082.1904296875,
                                    3763.454345703125,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            },
                            "76133": {
                                "creation_time": 1779555030797,
                                "p": [
                                    5063.86572265625,
                                    3784.237548828125,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            },
                            "76134": {
                                "creation_time": 1779555030797,
                                "p": [
                                    5037.20068359375,
                                    3792.288818359375,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            },
                            "76135": {
                                "creation_time": 1779555030797,
                                "p": [
                                    5011.2255859375,
                                    3782.5712890625,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            },
                            "76136": {
                                "creation_time": 1779555030797,
                                "p": [
                                    4986.40185546875,
                                    3770.075439453125,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            },
                            "76137": {
                                "creation_time": 1779555030797,
                                "p": [
                                    4962.7490234375,
                                    3754.751953125,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            },
                            "76138": {
                                "creation_time": 1779555030797,
                                "p": [
                                    4939.05126953125,
                                    3739.536865234375,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            },
                            "76139": {
                                "creation_time": 1779555030797,
                                "p": [
                                    4915.443359375,
                                    3724.104736328125,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            },
                            "76140": {
                                "creation_time": 1779555030797,
                                "p": [
                                    4891.79052734375,
                                    3708.78125,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            },
                            "76141": {
                                "creation_time": 1779555030797,
                                "p": [
                                    4867.45166015625,
                                    3695.1142578125,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            },
                            "76142": {
                                "creation_time": 1779555030797,
                                "p": [
                                    4842.8583984375,
                                    3682.060546875,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            },
                            "76143": {
                                "creation_time": 1779555030797,
                                "p": [
                                    4818.79931640625,
                                    3667.71875,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            },
                            "76144": {
                                "creation_time": 1779555030797,
                                "p": [
                                    4803.16015625,
                                    3656.244140625,
                                    9000.0
                                ],
                                "wind_a": 0.0
                            }
                        }
                    }
                }
            },
            "stages": [
                {
                    "lr": 0.1,
                    "min_scaledown": 0,
                    "name": "stage0",
                    "params": [
                        "mesh_ms"
                    ],
                    "steps": 1000,
                    "w_fac": {
                        "corr": 0.0,
                        "pred_dt": 0.0,
                        "station_n": 10.0,
                        "station_t": 10.0
                    }
                },
                {
                    "lr": 0.1,
                    "min_scaledown": 0,
                    "name": "stage1",
                    "params": [
                        "mesh_ms"
                    ],
                    "steps": 1000,
                    "w_fac": {
                        "pred_dt": 0.0,
                        "station_n": 10.0,
                        "station_t": 10.0
                    }
                },
                {
                    "lr": 0.01,
                    "min_scaledown": 0,
                    "name": "stage2",
                    "params": [
                        "mesh_ms"
                    ],
                    "steps": 500,
                    "w_fac": {
                        "pred_dt": 0.0,
                        "station_n": 10.0,
                        "station_t": 10.0
                    }
                },
                {
                    "_lr": [
                        10.0,
                        1.0,
                        0.1,
                        0.01,
                        0.001
                    ],
                    "args": {
                        "pred_dt_flow_gate": {
                            "anticipatory_pull": {
                                "_debug_roi_center_xyz": [
                                    17499,
                                    13412,
                                    51144
                                ],
                                "debug_roi_k": 8,
                                "debug_roi_root_min": 0.5,
                                "debug_roi_tip_max": 0.5,
                                "debug_slice_upsample": 8,
                                "enabled": true,
                                "inlier_one": 120.0,
                                "inlier_zero": 80.0,
                                "loss_weight": 2.0,
                                "samples": 8
                            },
                            "backtrack_distance": 50.0,
                            "debug": false,
                            "debug_out_dir": "/home/ubuntu/villa/lasagna",
                            "debug_vis_interval": 0,
                            "enabled": true,
                            "gate_factor": 1.0,
                            "local_boost": 0.5
                        },
                        "status_interval": 10
                    },
                    "dlr": [
                        1.0,
                        0.1,
                        0.01,
                        0.001,
                        0.0001
                    ],
                    "lr": 1.0,
                    "min_scaledown": 0,
                    "name": "snap",
                    "params": [
                        "mesh_ms"
                    ],
                    "steps": 500
                }
            ]
        },
        "linked_surfaces": [],
        "model": null,
        "volume_shape_zyx": [
            18946,
            8174,
            8174
        ]
    },
    "model_source": "/tmp/fit_reopt_epftnaiv/model_reopt.pt",
    "scale": [
        0.07999999821186066,
        0.07999999821186066
    ],
    "tags": {
        "date_last_modified": "20260614185644395",
        "reviewed": {
            "date": "20260604080934243"
        }
    },
    "type": "seg",
    "uuid": "same_wrap001683_lasagna"
}