{ "area_vx2": 1080468.75, "base_shape_zyx": [ 18946, 8174, 8174 ], "bbox": [ [ 3561.22314453125, 2861.79345703125, 6022.15380859375 ], [ 4439.86865234375, 4307.45556640625, 6535.52099609375 ] ], "extra_channels": [ { "dtype": "float32", "file": "flow_gate_local_contrast.tif", "name": "flow_gate_local_contrast", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.local_contrast", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } }, { "dtype": "float32", "file": "flow_gate_component_normalized.tif", "name": "flow_gate_component_normalized", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.component_normalized", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } } ], "fit_config": { "_corr_point_roi_init_": { "effective_seed": [ 16021.9443359375, 15340.9716796875, 25300.0 ], "final_anchor_h": 138.13307183980942, "final_anchor_w": 33.24379871040583, "final_shell_id": "shell_0007.tifxyz", "final_trim_bottom": 21, "final_trim_top": 20, "init_margin_grid_points": 80, "initial_seed": [ 16088.921875, 15433.228515625, 25300.0 ], "initial_shell_id": "shell_0007.tifxyz", "initial_skipped_point_count": 0, "initial_skipped_reasons": {}, "initial_trim_bottom": 21, "initial_trim_top": 20, "initial_usable_point_count": 67, "mode": "corr-point-roi", "model_h": 9451.33285522461, "model_w": 9408.294868469238, "model_w_unit": "voxels", "output_radius_grid_points": 20, "parsed_point_count": 67, "projected_h_span_grid": 29.026657104492188, "projected_h_span_vx": 1451.3328552246094, "projected_points": [ { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 13.109488478053011, "h": 139.5509490966797, "point_id": 78478, "row_index": 0, "w": 20.211212158203125 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 12.051215298955748, "h": 139.891845703125, "point_id": 78479, "row_index": 1, "w": 21.321613311767578 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 11.714134145252652, "h": 139.13653564453125, "point_id": 78480, "row_index": 2, "w": 21.572723388671875 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 7.968967446574733, "h": 130.16632080078125, "point_id": 78481, "row_index": 3, "w": 33.05586242675781 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 10.519050190940268, "h": 132.3072052001953, "point_id": 78482, "row_index": 4, "w": 24.48539161682129 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 10.7331194009041, "h": 136.4471893310547, "point_id": 78483, "row_index": 5, "w": 22.643909454345703 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 10.439258841738694, "h": 134.41810607910156, "point_id": 78484, "row_index": 6, "w": 23.4879207611084 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 10.41039716455519, "h": 134.25485229492188, "point_id": 78485, "row_index": 7, "w": 23.582754135131836 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 10.840889118183659, "h": 133.98794555664063, "point_id": 78486, "row_index": 8, "w": 23.226673126220703 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 11.174625809205985, "h": 135.36709594726563, "point_id": 78487, "row_index": 9, "w": 22.41690444946289 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 11.212330043333854, "h": 135.90721130371094, "point_id": 78488, "row_index": 10, "w": 22.254627227783203 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 11.950033730735765, "h": 136.2136993408203, "point_id": 78489, "row_index": 11, "w": 21.44891357421875 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 12.647707432205348, "h": 136.3790283203125, "point_id": 78490, "row_index": 12, "w": 20.718311309814453 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 12.226633430487015, "h": 136.75259399414063, "point_id": 78491, "row_index": 13, "w": 21.095348358154297 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 11.220580865310204, "h": 137.16604614257813, "point_id": 78492, "row_index": 14, "w": 22.064966201782227 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 11.060454829547751, "h": 137.3159637451172, "point_id": 78493, "row_index": 15, "w": 22.21356773376465 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 10.6481708630318, "h": 137.32247924804688, "point_id": 78494, "row_index": 16, "w": 22.62652587890625 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 9.778150691191122, "h": 137.2793426513672, "point_id": 78495, "row_index": 17, "w": 23.502988815307617 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 9.184813089428076, "h": 137.3459930419922, "point_id": 78496, "row_index": 18, "w": 24.092771530151367 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 8.588830583137337, "h": 137.46287536621094, "point_id": 78497, "row_index": 19, "w": 24.681156158447266 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 7.915697959502804, "h": 137.51123046875, "point_id": 78498, "row_index": 20, "w": 25.352563858032227 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 7.404625755408311, "h": 137.63009643554688, "point_id": 78499, "row_index": 21, "w": 25.85627555847168 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 6.8998182947758435, "h": 137.74615478515625, "point_id": 78500, "row_index": 22, "w": 26.35483741760254 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 6.344365319030675, "h": 137.8401641845703, "point_id": 78501, "row_index": 23, "w": 26.906198501586914 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 5.785348727341765, "h": 137.8380584716797, "point_id": 78502, "row_index": 24, "w": 27.46597671508789 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 5.290532816273143, "h": 137.9199676513672, "point_id": 78503, "row_index": 25, "w": 27.95755958557129 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 4.717941737436237, "h": 138.00863647460938, "point_id": 78504, "row_index": 26, "w": 28.527498245239258 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 4.1882600365147304, "h": 137.94239807128906, "point_id": 78505, "row_index": 27, "w": 29.05988121032715 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 3.64965129640611, "h": 138.08804321289063, "point_id": 78506, "row_index": 28, "w": 29.594425201416016 }, { "collection_id": 1131, "direction_sign": 1, "grid_distance_to_anchor": 21.099139303602282, "h": 159.19297790527344, "point_id": 78507, "row_index": 29, "w": 34.52989196777344 }, { "collection_id": 1131, "direction_sign": 1, "grid_distance_to_anchor": 18.15828110335614, "h": 156.2843780517578, "point_id": 78508, "row_index": 30, "w": 33.74704360961914 }, { "collection_id": 1131, "direction_sign": 1, "grid_distance_to_anchor": 20.470167075354993, "h": 158.4441680908203, "point_id": 78509, "row_index": 31, "w": 35.79077911376953 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 1.5467861223696704, "h": 138.23471069335938, "point_id": 78510, "row_index": 32, "w": 31.700355529785156 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 1.092849649844905, "h": 138.2781219482422, "point_id": 78511, "row_index": 33, "w": 32.16061782836914 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 0.6409326489079632, "h": 138.42152404785156, "point_id": 78512, "row_index": 34, "w": 32.671443939208984 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 0.4051456732257605, "h": 138.53692626953125, "point_id": 78513, "row_index": 35, "w": 33.276119232177734 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 0.8239880238415214, "h": 138.619873046875, "point_id": 78514, "row_index": 36, "w": 33.90861511230469 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 1.2088086530458266, "h": 138.58139038085938, "point_id": 78515, "row_index": 37, "w": 34.366397857666016 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 1.6853996220027785, "h": 138.62893676757813, "point_id": 78516, "row_index": 38, "w": 34.8546028137207 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 2.1568588331781706, "h": 138.7098846435547, "point_id": 78517, "row_index": 39, "w": 35.32209777832031 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 2.7348047951673236, "h": 138.79710388183594, "point_id": 78518, "row_index": 40, "w": 35.89676284790039 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 3.302723884764767, "h": 138.8077392578125, "point_id": 78519, "row_index": 41, "w": 36.47687911987305 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 3.839708366270537, "h": 138.9329376220703, "point_id": 78520, "row_index": 42, "w": 36.999271392822266 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 4.342577505215522, "h": 139.06700134277344, "point_id": 78521, "row_index": 43, "w": 37.48476028442383 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 4.88342573990665, "h": 139.2438201904297, "point_id": 78522, "row_index": 44, "w": 37.99922561645508 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 5.411685461729346, "h": 139.2924346923828, "point_id": 78523, "row_index": 45, "w": 38.52983856201172 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 5.9574036649691795, "h": 139.4396209716797, "point_id": 78524, "row_index": 46, "w": 39.0561637878418 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 6.438380239483606, "h": 139.47430419921875, "point_id": 78525, "row_index": 47, "w": 39.54092788696289 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 6.949947780883899, "h": 139.51768493652344, "point_id": 78526, "row_index": 48, "w": 40.05442428588867 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 7.496252032427721, "h": 139.66958618164063, "point_id": 78527, "row_index": 49, "w": 40.58089065551758 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 7.800025279178101, "h": 138.80953979492188, "point_id": 78528, "row_index": 50, "w": 41.014434814453125 }, { "collection_id": 1131, "direction_sign": 1, "grid_distance_to_anchor": 19.017634569863816, "h": 153.7267303466797, "point_id": 78529, "row_index": 51, "w": 44.129947662353516 }, { "collection_id": 1131, "direction_sign": 1, "grid_distance_to_anchor": 18.929580048390086, "h": 153.45632934570313, "point_id": 78530, "row_index": 52, "w": 44.35805892944336 }, { "collection_id": 1131, "direction_sign": 1, "grid_distance_to_anchor": 19.09554065953693, "h": 153.343505859375, "point_id": 78531, "row_index": 53, "w": 44.788597106933594 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 9.74613439995091, "h": 138.9390411376953, "point_id": 78532, "row_index": 54, "w": 42.95655059814453 }, { "collection_id": 1131, "direction_sign": 1, "grid_distance_to_anchor": 19.33922698021998, "h": 153.0014190673828, "point_id": 78533, "row_index": 55, "w": 45.6106071472168 }, { "collection_id": 1131, "direction_sign": 1, "grid_distance_to_anchor": 19.325364797880283, "h": 152.6978759765625, "point_id": 78534, "row_index": 56, "w": 45.94561767578125 }, { "collection_id": 1131, "direction_sign": 1, "grid_distance_to_anchor": 19.31487907099474, "h": 152.38563537597656, "point_id": 78535, "row_index": 57, "w": 46.27947998046875 }, { "collection_id": 1131, "direction_sign": 1, "grid_distance_to_anchor": 23.91834761347079, "h": 156.6552276611328, "point_id": 78536, "row_index": 58, "w": 48.37710952758789 }, { "collection_id": 1131, "direction_sign": 1, "grid_distance_to_anchor": 17.057110432349035, "h": 149.34768676757813, "point_id": 78537, "row_index": 59, "w": 46.0959358215332 }, { "collection_id": 1131, "direction_sign": 1, "grid_distance_to_anchor": 12.955804768334025, "h": 140.862060546875, "point_id": 78538, "row_index": 60, "w": 45.90892791748047 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 13.41470619818884, "h": 140.8653564453125, "point_id": 78539, "row_index": 61, "w": 46.37730407714844 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 13.844673727537968, "h": 140.93214416503906, "point_id": 78540, "row_index": 62, "w": 46.80256652832031 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 14.226025529928807, "h": 140.96646118164063, "point_id": 78541, "row_index": 63, "w": 47.18480682373047 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 14.720109678097065, "h": 141.27342224121094, "point_id": 78542, "row_index": 64, "w": 47.625030517578125 }, { "collection_id": 1131, "direction_sign": -1, "grid_distance_to_anchor": 15.092203821113158, "h": 141.44708251953125, "point_id": 78543, "row_index": 65, "w": 47.967655181884766 }, { "collection_id": 1131, "direction_sign": 1, "grid_distance_to_anchor": 12.951871011280401, "h": 144.655029296875, "point_id": 78544, "row_index": 66, "w": 22.05384635925293 } ], "projected_w_span_grid": 28.165897369384766, "projected_w_span_vx": 1408.2948684692383, "projection_mode": "normal-line", "skipped_point_count": 0, "skipped_points": [], "skipped_reasons": {}, "usable_point_count": 67, "windings": 1 }, "args": { "approval-inpaint": false, "approval-inpaint-corr-spacing": null, "approval-inpaint-output-mask": false, "approval-inpaint-output-mask-dilate": 3, "approval-inpaint-padding-frac": 0.25, "approval-inpaint-tifxyz": null, "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "crop": null, "cuda-gridsample": 1, "depth": 1, "device": "cuda", "downscale": 4.0, "erode-valid-mask": 0, "flatten-solver": "torch", "init-mode": "shell-dir-crop", "input": "/ephemeral/lasag_strip_outputs/.lasagna_point_strip_work/collection_1131/point_strip.lasagna.json", "mesh-h": 32, "mesh-step": 50, "mesh-w": 32, "model-h": 9451.33285522461, "model-init": "seed", "model-input": null, "model-output": "/tmp/fit_reopt_dcak96h5/model_reopt.pt", "model-w": 9408.294868469238, "model-w-unit": "voxels", "normal-mask-zero": 0, "out-dir": null, "progress": true, "pyramid-d": false, "seed": [ 16021.9443359375, 15340.9716796875, 25300.0 ], "snapshot-interval": 1000, "sparse-prefetch-backend": "tensorstore", "subsample-mesh": 4, "subsample-winding": 4, "tifxyz-flow-gate-channels": true, "tifxyz-init": null, "winding-step": 25, "winding-volume": null, "windings": 1, "z-center": 0.0 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "1131": { "color": [ 0.250980406999588, 1.0, 0.6274510025978088 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap1759", "points": { "78478": { "creation_time": 1779555817039, "p": [ 18640.234375, 16292.1337890625, 25300.0 ], "wind_a": 0.0 }, "78479": { "creation_time": 1779555817039, "p": [ 18545.49609375, 16353.1240234375, 25300.0 ], "wind_a": 0.0 }, "78480": { "creation_time": 1779555817039, "p": [ 18464.74609375, 16435.72265625, 25300.0 ], "wind_a": 0.0 }, "78481": { "creation_time": 1779555817039, "p": [ 18388.130859375, 16523.98828125, 25300.0 ], "wind_a": 0.0 }, "78482": { "creation_time": 1779555817039, "p": [ 18302.7578125, 16596.763671875, 25300.0 ], "wind_a": 0.0 }, "78483": { "creation_time": 1779555817039, "p": [ 18275.759765625, 16705.580078125, 25300.0 ], "wind_a": 0.0 }, "78484": { "creation_time": 1779555817039, "p": [ 18275.759765625, 16825.580078125, 25300.0 ], "wind_a": 0.0 }, "78485": { "creation_time": 1779555817039, "p": [ 18275.759765625, 16945.580078125, 25300.0 ], "wind_a": 0.0 }, "78486": { "creation_time": 1779555817039, "p": [ 18263.384765625, 17060.453125, 25300.0 ], "wind_a": 0.0 }, "78487": { "creation_time": 1779555817039, "p": [ 18211.939453125, 17159.14453125, 25300.0 ], "wind_a": 0.0 }, "78488": { "creation_time": 1779555817039, "p": [ 18117.203125, 17220.134765625, 25300.0 ], "wind_a": 0.0 }, "78489": { "creation_time": 1779555817039, "p": [ 18006.650390625, 17242.943359375, 25300.0 ], "wind_a": 0.0 }, "78490": { "creation_time": 1779555817039, "p": [ 17895.3984375, 17223.564453125, 25300.0 ], "wind_a": 0.0 }, "78491": { "creation_time": 1779555817039, "p": [ 17793.453125, 17179.974609375, 25300.0 ], "wind_a": 0.0 }, "78492": { "creation_time": 1779555817039, "p": [ 17696.73828125, 17123.7578125, 25300.0 ], "wind_a": 0.0 }, "78493": { "creation_time": 1779555817039, "p": [ 17602.001953125, 17062.767578125, 25300.0 ], "wind_a": 0.0 }, "78494": { "creation_time": 1779555817039, "p": [ 17511.21875, 16992.234375, 25300.0 ], "wind_a": 0.0 }, "78495": { "creation_time": 1779555817039, "p": [ 17424.388671875, 16912.15234375, 25300.0 ], "wind_a": 0.0 }, "78496": { "creation_time": 1779555817039, "p": [ 17339.53515625, 16827.30078125, 25300.0 ], "wind_a": 0.0 }, "78497": { "creation_time": 1779555817039, "p": [ 17254.68359375, 16742.447265625, 25300.0 ], "wind_a": 0.0 }, "78498": { "creation_time": 1779555817039, "p": [ 17169.830078125, 16657.59375, 25300.0 ], "wind_a": 0.0 }, "78499": { "creation_time": 1779555817039, "p": [ 17084.9765625, 16572.7421875, 25300.0 ], "wind_a": 0.0 }, "78500": { "creation_time": 1779555817039, "p": [ 17000.125, 16487.888671875, 25300.0 ], "wind_a": 0.0 }, "78501": { "creation_time": 1779555817039, "p": [ 16920.044921875, 16401.05859375, 25300.0 ], "wind_a": 0.0 }, "78502": { "creation_time": 1779555817039, "p": [ 16839.96484375, 16314.2294921875, 25300.0 ], "wind_a": 0.0 }, "78503": { "creation_time": 1779555817039, "p": [ 16763.873046875, 16229.701171875, 25300.0 ], "wind_a": 0.0 }, "78504": { "creation_time": 1779555817039, "p": [ 16687.37109375, 16141.388671875, 25300.0 ], "wind_a": 0.0 }, "78505": { "creation_time": 1779555817039, "p": [ 16607.291015625, 16054.5595703125, 25300.0 ], "wind_a": 0.0 }, "78506": { "creation_time": 1779555817039, "p": [ 16527.2109375, 15967.7294921875, 25300.0 ], "wind_a": 0.0 }, "78507": { "creation_time": 1779555817039, "p": [ 16449.927734375, 15883.6953125, 25300.0 ], "wind_a": 0.0 }, "78508": { "creation_time": 1779555817039, "p": [ 16379.392578125, 15792.912109375, 25300.0 ], "wind_a": 0.0 }, "78509": { "creation_time": 1779555817039, "p": [ 16304.083984375, 15704.10546875, 25300.0 ], "wind_a": 0.0 }, "78510": { "creation_time": 1779555817039, "p": [ 16228.77734375, 15615.298828125, 25300.0 ], "wind_a": 0.0 }, "78511": { "creation_time": 1779555817039, "p": [ 16158.2421875, 15524.515625, 25300.0 ], "wind_a": 0.0 }, "78512": { "creation_time": 1779555817039, "p": [ 16088.921875, 15433.228515625, 25300.0 ], "wind_a": 0.0 }, "78513": { "creation_time": 1779555817039, "p": [ 16021.9443359375, 15340.9716796875, 25300.0 ], "wind_a": 0.0 }, "78514": { "creation_time": 1779555817039, "p": [ 15946.63671875, 15252.1650390625, 25300.0 ], "wind_a": 0.0 }, "78515": { "creation_time": 1779555817039, "p": [ 15871.3291015625, 15163.3583984375, 25300.0 ], "wind_a": 0.0 }, "78516": { "creation_time": 1779555817039, "p": [ 15798.693359375, 15073.4453125, 25300.0 ], "wind_a": 0.0 }, "78517": { "creation_time": 1779555817039, "p": [ 15735.0322265625, 14979.814453125, 25300.0 ], "wind_a": 0.0 }, "78518": { "creation_time": 1779555817039, "p": [ 15669.26953125, 14887.0546875, 25300.0 ], "wind_a": 0.0 }, "78519": { "creation_time": 1779555817039, "p": [ 15598.7353515625, 14796.2705078125, 25300.0 ], "wind_a": 0.0 }, "78520": { "creation_time": 1779555817039, "p": [ 15528.2001953125, 14705.4873046875, 25300.0 ], "wind_a": 0.0 }, "78521": { "creation_time": 1779555817039, "p": [ 15462.4375, 14612.7265625, 25300.0 ], "wind_a": 0.0 }, "78522": { "creation_time": 1779555817039, "p": [ 15401.4482421875, 14517.990234375, 25300.0 ], "wind_a": 0.0 }, "78523": { "creation_time": 1779555817039, "p": [ 15340.4580078125, 14423.251953125, 25300.0 ], "wind_a": 0.0 }, "78524": { "creation_time": 1779555817039, "p": [ 15278.982421875, 14328.716796875, 25300.0 ], "wind_a": 0.0 }, "78525": { "creation_time": 1779555817039, "p": [ 15213.7060546875, 14235.7548828125, 25300.0 ], "wind_a": 0.0 }, "78526": { "creation_time": 1779555817039, "p": [ 15157.4912109375, 14139.0400390625, 25300.0 ], "wind_a": 0.0 }, "78527": { "creation_time": 1779555817039, "p": [ 15103.4951171875, 14041.4052734375, 25300.0 ], "wind_a": 0.0 }, "78528": { "creation_time": 1779555817039, "p": [ 15049.8271484375, 13943.6357421875, 25300.0 ], "wind_a": 0.0 }, "78529": { "creation_time": 1779555817039, "p": [ 14995.50390625, 13846.1376953125, 25300.0 ], "wind_a": 0.0 }, "78530": { "creation_time": 1779555817039, "p": [ 14946.9384765625, 13746.25390625, 25300.0 ], "wind_a": 0.0 }, "78531": { "creation_time": 1779555817039, "p": [ 14901.009765625, 13645.27734375, 25300.0 ], "wind_a": 0.0 }, "78532": { "creation_time": 1779555817039, "p": [ 14860.513671875, 13542.0517578125, 25300.0 ], "wind_a": 0.0 }, "78533": { "creation_time": 1779555817039, "p": [ 14820.0166015625, 13438.826171875, 25300.0 ], "wind_a": 0.0 }, "78534": { "creation_time": 1779555817039, "p": [ 14779.51953125, 13335.6005859375, 25300.0 ], "wind_a": 0.0 }, "78535": { "creation_time": 1779555817039, "p": [ 14742.21484375, 13231.052734375, 25300.0 ], "wind_a": 0.0 }, "78536": { "creation_time": 1779555817039, "p": [ 14711.837890625, 13133.1806640625, 25300.0 ], "wind_a": 0.0 }, "78537": { "creation_time": 1779555817039, "p": [ 14671.52734375, 13029.8779296875, 25300.0 ], "wind_a": 0.0 }, "78538": { "creation_time": 1779555817039, "p": [ 14632.8115234375, 12925.9140625, 25300.0 ], "wind_a": 0.0 }, "78539": { "creation_time": 1779555817039, "p": [ 14604.0322265625, 12817.8349609375, 25300.0 ], "wind_a": 0.0 }, "78540": { "creation_time": 1779555817039, "p": [ 14583.7841796875, 12706.22265625, 25300.0 ], "wind_a": 0.0 }, "78541": { "creation_time": 1779555817039, "p": [ 14577.0341796875, 12589.017578125, 25300.0 ], "wind_a": 0.0 }, "78542": { "creation_time": 1779555817039, "p": [ 14577.0341796875, 12469.017578125, 25300.0 ], "wind_a": 0.0 }, "78543": { "creation_time": 1779555817039, "p": [ 14590.533203125, 12354.609375, 25300.0 ], "wind_a": 0.0 }, "78544": { "creation_time": 1779555817039, "p": [ 14617.53125, 12255.9326171875, 25300.0 ], "wind_a": 0.0 } } } } }, "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ], "vc3d_volume_shape_zyx": [ 18946, 8174, 8174 ] }, "format": "tifxyz", "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "lasagna_job": { "config": { "args": { "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "init-mode": "shell-dir-crop", "mesh-step": 50.0, "model-h": 5000.0, "model-init": "seed", "model-w": 5000.0, "model-w-unit": "voxels", "seed": [ 4039.560546875, 3881.12890625, 6325.0 ], "tifxyz-flow-gate-channels": true, "windings": 1 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "1131": { "color": [ 0.250980406999588, 1.0, 0.6274510025978088 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap1759", "points": { "78478": { "creation_time": 1779555817039, "p": [ 4660.05859375, 4073.033447265625, 6325.0 ], "wind_a": 0.0 }, "78479": { "creation_time": 1779555817039, "p": [ 4636.3740234375, 4088.281005859375, 6325.0 ], "wind_a": 0.0 }, "78480": { "creation_time": 1779555817039, "p": [ 4616.1865234375, 4108.9306640625, 6325.0 ], "wind_a": 0.0 }, "78481": { "creation_time": 1779555817039, "p": [ 4597.03271484375, 4130.9970703125, 6325.0 ], "wind_a": 0.0 }, "78482": { "creation_time": 1779555817039, "p": [ 4575.689453125, 4149.19091796875, 6325.0 ], "wind_a": 0.0 }, "78483": { "creation_time": 1779555817039, "p": [ 4568.93994140625, 4176.39501953125, 6325.0 ], "wind_a": 0.0 }, "78484": { "creation_time": 1779555817039, "p": [ 4568.93994140625, 4206.39501953125, 6325.0 ], "wind_a": 0.0 }, "78485": { "creation_time": 1779555817039, "p": [ 4568.93994140625, 4236.39501953125, 6325.0 ], "wind_a": 0.0 }, "78486": { "creation_time": 1779555817039, "p": [ 4565.84619140625, 4265.11328125, 6325.0 ], "wind_a": 0.0 }, "78487": { "creation_time": 1779555817039, "p": [ 4552.98486328125, 4289.7861328125, 6325.0 ], "wind_a": 0.0 }, "78488": { "creation_time": 1779555817039, "p": [ 4529.30078125, 4305.03369140625, 6325.0 ], "wind_a": 0.0 }, "78489": { "creation_time": 1779555817039, "p": [ 4501.66259765625, 4310.73583984375, 6325.0 ], "wind_a": 0.0 }, "78490": { "creation_time": 1779555817039, "p": [ 4473.849609375, 4305.89111328125, 6325.0 ], "wind_a": 0.0 }, "78491": { "creation_time": 1779555817039, "p": [ 4448.36328125, 4294.99365234375, 6325.0 ], "wind_a": 0.0 }, "78492": { "creation_time": 1779555817039, "p": [ 4424.1845703125, 4280.939453125, 6325.0 ], "wind_a": 0.0 }, "78493": { "creation_time": 1779555817039, "p": [ 4400.50048828125, 4265.69189453125, 6325.0 ], "wind_a": 0.0 }, "78494": { "creation_time": 1779555817039, "p": [ 4377.8046875, 4248.05859375, 6325.0 ], "wind_a": 0.0 }, "78495": { "creation_time": 1779555817039, "p": [ 4356.09716796875, 4228.0380859375, 6325.0 ], "wind_a": 0.0 }, "78496": { "creation_time": 1779555817039, "p": [ 4334.8837890625, 4206.8251953125, 6325.0 ], "wind_a": 0.0 }, "78497": { "creation_time": 1779555817039, "p": [ 4313.6708984375, 4185.61181640625, 6325.0 ], "wind_a": 0.0 }, "78498": { "creation_time": 1779555817039, "p": [ 4292.45751953125, 4164.3984375, 6325.0 ], "wind_a": 0.0 }, "78499": { "creation_time": 1779555817039, "p": [ 4271.244140625, 4143.185546875, 6325.0 ], "wind_a": 0.0 }, "78500": { "creation_time": 1779555817039, "p": [ 4250.03125, 4121.97216796875, 6325.0 ], "wind_a": 0.0 }, "78501": { "creation_time": 1779555817039, "p": [ 4230.01123046875, 4100.2646484375, 6325.0 ], "wind_a": 0.0 }, "78502": { "creation_time": 1779555817039, "p": [ 4209.9912109375, 4078.557373046875, 6325.0 ], "wind_a": 0.0 }, "78503": { "creation_time": 1779555817039, "p": [ 4190.96826171875, 4057.42529296875, 6325.0 ], "wind_a": 0.0 }, "78504": { "creation_time": 1779555817039, "p": [ 4171.8427734375, 4035.34716796875, 6325.0 ], "wind_a": 0.0 }, "78505": { "creation_time": 1779555817039, "p": [ 4151.82275390625, 4013.639892578125, 6325.0 ], "wind_a": 0.0 }, "78506": { "creation_time": 1779555817039, "p": [ 4131.802734375, 3991.932373046875, 6325.0 ], "wind_a": 0.0 }, "78507": { "creation_time": 1779555817039, "p": [ 4112.48193359375, 3970.923828125, 6325.0 ], "wind_a": 0.0 }, "78508": { "creation_time": 1779555817039, "p": [ 4094.84814453125, 3948.22802734375, 6325.0 ], "wind_a": 0.0 }, "78509": { "creation_time": 1779555817039, "p": [ 4076.02099609375, 3926.0263671875, 6325.0 ], "wind_a": 0.0 }, "78510": { "creation_time": 1779555817039, "p": [ 4057.1943359375, 3903.82470703125, 6325.0 ], "wind_a": 0.0 }, "78511": { "creation_time": 1779555817039, "p": [ 4039.560546875, 3881.12890625, 6325.0 ], "wind_a": 0.0 }, "78512": { "creation_time": 1779555817039, "p": [ 4022.23046875, 3858.30712890625, 6325.0 ], "wind_a": 0.0 }, "78513": { "creation_time": 1779555817039, "p": [ 4005.486083984375, 3835.242919921875, 6325.0 ], "wind_a": 0.0 }, "78514": { "creation_time": 1779555817039, "p": [ 3986.6591796875, 3813.041259765625, 6325.0 ], "wind_a": 0.0 }, "78515": { "creation_time": 1779555817039, "p": [ 3967.832275390625, 3790.839599609375, 6325.0 ], "wind_a": 0.0 }, "78516": { "creation_time": 1779555817039, "p": [ 3949.67333984375, 3768.361328125, 6325.0 ], "wind_a": 0.0 }, "78517": { "creation_time": 1779555817039, "p": [ 3933.758056640625, 3744.95361328125, 6325.0 ], "wind_a": 0.0 }, "78518": { "creation_time": 1779555817039, "p": [ 3917.3173828125, 3721.763671875, 6325.0 ], "wind_a": 0.0 }, "78519": { "creation_time": 1779555817039, "p": [ 3899.683837890625, 3699.067626953125, 6325.0 ], "wind_a": 0.0 }, "78520": { "creation_time": 1779555817039, "p": [ 3882.050048828125, 3676.371826171875, 6325.0 ], "wind_a": 0.0 }, "78521": { "creation_time": 1779555817039, "p": [ 3865.609375, 3653.181640625, 6325.0 ], "wind_a": 0.0 }, "78522": { "creation_time": 1779555817039, "p": [ 3850.362060546875, 3629.49755859375, 6325.0 ], "wind_a": 0.0 }, "78523": { "creation_time": 1779555817039, "p": [ 3835.114501953125, 3605.81298828125, 6325.0 ], "wind_a": 0.0 }, "78524": { "creation_time": 1779555817039, "p": [ 3819.74560546875, 3582.17919921875, 6325.0 ], "wind_a": 0.0 }, "78525": { "creation_time": 1779555817039, "p": [ 3803.426513671875, 3558.938720703125, 6325.0 ], "wind_a": 0.0 }, "78526": { "creation_time": 1779555817039, "p": [ 3789.372802734375, 3534.760009765625, 6325.0 ], "wind_a": 0.0 }, "78527": { "creation_time": 1779555817039, "p": [ 3775.873779296875, 3510.351318359375, 6325.0 ], "wind_a": 0.0 }, "78528": { "creation_time": 1779555817039, "p": [ 3762.456787109375, 3485.908935546875, 6325.0 ], "wind_a": 0.0 }, "78529": { "creation_time": 1779555817039, "p": [ 3748.8759765625, 3461.534423828125, 6325.0 ], "wind_a": 0.0 }, "78530": { "creation_time": 1779555817039, "p": [ 3736.734619140625, 3436.5634765625, 6325.0 ], "wind_a": 0.0 }, "78531": { "creation_time": 1779555817039, "p": [ 3725.25244140625, 3411.3193359375, 6325.0 ], "wind_a": 0.0 }, "78532": { "creation_time": 1779555817039, "p": [ 3715.12841796875, 3385.512939453125, 6325.0 ], "wind_a": 0.0 }, "78533": { "creation_time": 1779555817039, "p": [ 3705.004150390625, 3359.70654296875, 6325.0 ], "wind_a": 0.0 }, "78534": { "creation_time": 1779555817039, "p": [ 3694.8798828125, 3333.900146484375, 6325.0 ], "wind_a": 0.0 }, "78535": { "creation_time": 1779555817039, "p": [ 3685.5537109375, 3307.76318359375, 6325.0 ], "wind_a": 0.0 }, "78536": { "creation_time": 1779555817039, "p": [ 3677.95947265625, 3283.295166015625, 6325.0 ], "wind_a": 0.0 }, "78537": { "creation_time": 1779555817039, "p": [ 3667.8818359375, 3257.469482421875, 6325.0 ], "wind_a": 0.0 }, "78538": { "creation_time": 1779555817039, "p": [ 3658.202880859375, 3231.478515625, 6325.0 ], "wind_a": 0.0 }, "78539": { "creation_time": 1779555817039, "p": [ 3651.008056640625, 3204.458740234375, 6325.0 ], "wind_a": 0.0 }, "78540": { "creation_time": 1779555817039, "p": [ 3645.946044921875, 3176.5556640625, 6325.0 ], "wind_a": 0.0 }, "78541": { "creation_time": 1779555817039, "p": [ 3644.258544921875, 3147.25439453125, 6325.0 ], "wind_a": 0.0 }, "78542": { "creation_time": 1779555817039, "p": [ 3644.258544921875, 3117.25439453125, 6325.0 ], "wind_a": 0.0 }, "78543": { "creation_time": 1779555817039, "p": [ 3647.63330078125, 3088.65234375, 6325.0 ], "wind_a": 0.0 }, "78544": { "creation_time": 1779555817039, "p": [ 3654.3828125, 3063.983154296875, 6325.0 ], "wind_a": 0.0 } } } } }, "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ] }, "linked_surfaces": [], "model": null, "volume_shape_zyx": [ 18946, 8174, 8174 ] }, "model_source": "/tmp/fit_reopt_dcak96h5/model_reopt.pt", "scale": [ 0.07999999821186066, 0.07999999821186066 ], "tags": { "date_last_modified": "20260614185644407", "reviewed": { "date": "20260604080934245" } }, "type": "seg", "uuid": "same_wrap001759_lasagna" }