{ "area_vx2": 775312.5, "base_shape_zyx": [ 18946, 8174, 8174 ], "bbox": [ [ 5378.90087890625, 3926.87548828125, 11459.8173828125 ], [ 5839.39990234375, 4400.3974609375, 12600.7626953125 ] ], "extra_channels": [ { "dtype": "float32", "file": "flow_gate_local_contrast.tif", "name": "flow_gate_local_contrast", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.local_contrast", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } }, { "dtype": "float32", "file": "flow_gate_component_normalized.tif", "name": "flow_gate_component_normalized", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.component_normalized", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } } ], "fit_config": { "_corr_point_roi_init_": { "effective_seed": [ 22742.833984375, 16698.8984375, 48856.1171875 ], "final_anchor_h": 279.3980907127261, "final_anchor_w": 29.09697612375021, "final_shell_id": "shell_0004.tifxyz", "final_trim_bottom": 7, "final_trim_top": 8, "init_margin_grid_points": 80, "initial_seed": [ 22520.2109375, 16863.630859375, 48960.0703125 ], "initial_shell_id": "shell_0003.tifxyz", "initial_skipped_point_count": 0, "initial_skipped_reasons": {}, "initial_trim_bottom": 11, "initial_trim_top": 9, "initial_usable_point_count": 53, "mode": "corr-point-roi", "model_h": 8904.156494140625, "model_w": 8060.219669342041, "model_w_unit": "voxels", "output_radius_grid_points": 20, "parsed_point_count": 53, "projected_h_span_grid": 18.0831298828125, "projected_h_span_vx": 904.156494140625, "projected_points": [ { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 8.034665570015619, "h": 287.4322814941406, "point_id": 85445, "row_index": 0, "w": 29.00963020324707 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 7.638499947818723, "h": 287.0364990234375, "point_id": 85446, "row_index": 1, "w": 29.13439178466797 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 7.342084349037721, "h": 286.73846435546875, "point_id": 85447, "row_index": 2, "w": 29.255460739135742 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 7.100783909492202, "h": 286.4908142089844, "point_id": 85448, "row_index": 3, "w": 29.43521499633789 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 6.952005014983646, "h": 286.3309326171875, "point_id": 85449, "row_index": 4, "w": 29.612802505493164 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 6.881501537865935, "h": 286.2499084472656, "point_id": 85450, "row_index": 5, "w": 29.735456466674805 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 6.6501717055875895, "h": 286.0027160644531, "point_id": 85451, "row_index": 6, "w": 29.87396240234375 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 6.433932736273157, "h": 285.7767028808594, "point_id": 85452, "row_index": 7, "w": 29.93887710571289 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 6.23551996237964, "h": 285.5802307128906, "point_id": 85453, "row_index": 8, "w": 29.911134719848633 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 5.8908283332489475, "h": 285.2374267578125, "point_id": 85454, "row_index": 9, "w": 29.87415885925293 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 5.539252804756458, "h": 284.8819885253906, "point_id": 85455, "row_index": 10, "w": 29.87812042236328 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 5.192577234378622, "h": 284.53778076171875, "point_id": 85456, "row_index": 11, "w": 29.83619499206543 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 4.801778234843903, "h": 284.1494140625, "point_id": 85457, "row_index": 12, "w": 29.79123878479004 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 4.37029471308766, "h": 283.7195739746094, "point_id": 85458, "row_index": 13, "w": 29.748327255249023 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 3.944715366479734, "h": 283.2940368652344, "point_id": 85459, "row_index": 14, "w": 29.715347290039063 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 3.574935506627281, "h": 282.9210205078125, "point_id": 85460, "row_index": 15, "w": 29.70453643798828 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 3.258976274810741, "h": 282.6031188964844, "point_id": 85461, "row_index": 16, "w": 29.687501907348633 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 2.899115712356878, "h": 282.24267578125, "point_id": 85462, "row_index": 17, "w": 29.656625747680664 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 2.510850350569524, "h": 281.8549499511719, "point_id": 85463, "row_index": 18, "w": 29.6148681640625 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 2.1263062638451666, "h": 281.4690856933594, "point_id": 85464, "row_index": 19, "w": 29.57880401611328 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 1.8676704336457781, "h": 281.2132263183594, "point_id": 85465, "row_index": 20, "w": 29.536834716796875 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 1.5999018557709157, "h": 280.95526123046875, "point_id": 85466, "row_index": 21, "w": 29.464271545410156 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 1.2500745190057838, "h": 280.61907958984375, "point_id": 85467, "row_index": 22, "w": 29.365066528320313 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 0.858629945382036, "h": 280.2423400878906, "point_id": 85468, "row_index": 23, "w": 29.253463745117188 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 0.4533180553126458, "h": 279.8459167480469, "point_id": 85469, "row_index": 24, "w": 29.167325973510742 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 0.02449799424215034, "h": 279.38592529296875, "point_id": 85470, "row_index": 25, "w": 29.075712203979492 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 0.5038197605773366, "h": 278.89990234375, "point_id": 85471, "row_index": 26, "w": 29.02185821533203 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 0.9371355195046889, "h": 278.4661865234375, "point_id": 85472, "row_index": 27, "w": 28.99809455871582 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 1.7903189609630006, "h": 281.1783142089844, "point_id": 85473, "row_index": 28, "w": 29.286834716796875 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 1.848990099732593, "h": 277.5564880371094, "point_id": 85474, "row_index": 29, "w": 28.93185806274414 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 2.2530290928727887, "h": 277.1524658203125, "point_id": 85475, "row_index": 30, "w": 28.91446876525879 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 2.5917827631584074, "h": 276.8134460449219, "point_id": 85476, "row_index": 31, "w": 28.904752731323242 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 2.953592572092374, "h": 276.45111083984375, "point_id": 85477, "row_index": 32, "w": 28.899444580078125 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 3.3601144594084023, "h": 276.0436706542969, "point_id": 85478, "row_index": 33, "w": 28.901437759399414 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 3.7709483226115115, "h": 275.6328430175781, "point_id": 85479, "row_index": 34, "w": 28.889705657958984 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 4.150910550994464, "h": 275.2535400390625, "point_id": 85480, "row_index": 35, "w": 28.867284774780273 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 4.504699370930598, "h": 274.90032958984375, "point_id": 85481, "row_index": 36, "w": 28.84705352783203 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 4.886057118322234, "h": 274.5194091796875, "point_id": 85482, "row_index": 37, "w": 28.828609466552734 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 5.2504505442369345, "h": 274.1554260253906, "point_id": 85483, "row_index": 38, "w": 28.811147689819336 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 5.613626685931907, "h": 273.7930603027344, "point_id": 85484, "row_index": 39, "w": 28.78643035888672 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 5.9963676335225395, "h": 273.41204833984375, "point_id": 85485, "row_index": 40, "w": 28.745235443115234 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 6.380563957246738, "h": 273.02783203125, "point_id": 85486, "row_index": 41, "w": 28.73448371887207 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 6.750886332720688, "h": 272.6568908691406, "point_id": 85487, "row_index": 42, "w": 28.735464096069336 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 7.0637103265556895, "h": 272.3428649902344, "point_id": 85488, "row_index": 43, "w": 28.750864028930664 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 7.261327631260987, "h": 272.1436462402344, "point_id": 85489, "row_index": 44, "w": 28.7808837890625 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 7.527661040942043, "h": 271.8759460449219, "point_id": 85490, "row_index": 45, "w": 28.8088436126709 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 9.34467355644913, "h": 270.0558166503906, "point_id": 85491, "row_index": 46, "w": 28.885223388671875 }, { "collection_id": 2280, "direction_sign": -1, "grid_distance_to_anchor": 8.411828411893008, "h": 270.9898681640625, "point_id": 85492, "row_index": 47, "w": 28.8507022857666 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 8.6099375590278, "h": 270.7911376953125, "point_id": 85493, "row_index": 48, "w": 28.87029457092285 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 9.099881696323852, "h": 270.3002014160156, "point_id": 85494, "row_index": 49, "w": 28.90656280517578 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 9.466265248852263, "h": 269.9330749511719, "point_id": 85495, "row_index": 50, "w": 28.94317626953125 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 9.800873141893234, "h": 269.5981140136719, "point_id": 85496, "row_index": 51, "w": 28.964420318603516 }, { "collection_id": 2280, "direction_sign": 1, "grid_distance_to_anchor": 10.049627313172477, "h": 269.3491516113281, "point_id": 85497, "row_index": 52, "w": 28.979366302490234 } ], "projected_w_span_grid": 1.2043933868408203, "projected_w_span_vx": 60.219669342041016, "projection_mode": "normal-line", "skipped_point_count": 0, "skipped_points": [], "skipped_reasons": {}, "usable_point_count": 53, "windings": 1 }, "args": { "approval-inpaint": false, "approval-inpaint-corr-spacing": null, "approval-inpaint-output-mask": false, "approval-inpaint-output-mask-dilate": 3, "approval-inpaint-padding-frac": 0.25, "approval-inpaint-tifxyz": null, "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "crop": null, "cuda-gridsample": 1, "depth": 1, "device": "cuda", "downscale": 4.0, "erode-valid-mask": 0, "flatten-solver": "torch", "init-mode": "shell-dir-crop", "input": "/ephemeral/lasag_strip_outputs/.lasagna_point_strip_work/collection_2280/point_strip.lasagna.json", "mesh-h": 32, "mesh-step": 50, "mesh-w": 32, "model-h": 8904.156494140625, "model-init": "seed", "model-input": null, "model-output": "/tmp/fit_reopt_ov4pxz8p/model_reopt.pt", "model-w": 8060.219669342041, "model-w-unit": "voxels", "normal-mask-zero": 0, "out-dir": null, "progress": true, "pyramid-d": false, "seed": [ 22742.833984375, 16698.8984375, 48856.1171875 ], "snapshot-interval": 1000, "sparse-prefetch-backend": "tensorstore", "subsample-mesh": 4, "subsample-winding": 4, "tifxyz-flow-gate-channels": true, "tifxyz-init": null, "winding-step": 25, "winding-volume": null, "windings": 1, "z-center": 0.0 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "2280": { "color": [ 1.0, 0.7058823704719543, 0.3137255012989044 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap1938", "points": { "85445": { "creation_time": 1779580463821, "p": [ 22033.87890625, 17223.49609375, 50196.58203125 ], "wind_a": 0.0 }, "85446": { "creation_time": 1779580463821, "p": [ 21990.908203125, 17255.29296875, 50143.12890625 ], "wind_a": 0.0 }, "85447": { "creation_time": 1779580463821, "p": [ 21956.1171875, 17281.037109375, 50081.0546875 ], "wind_a": 0.0 }, "85448": { "creation_time": 1779580463821, "p": [ 21925.115234375, 17303.978515625, 50017.03125 ], "wind_a": 0.0 }, "85449": { "creation_time": 1779580463821, "p": [ 21901.48828125, 17321.4609375, 49949.203125 ], "wind_a": 0.0 }, "85450": { "creation_time": 1779580463821, "p": [ 21897.923828125, 17324.09765625, 49871.0390625 ], "wind_a": 0.0 }, "85451": { "creation_time": 1779580463821, "p": [ 21903.966796875, 17319.626953125, 49794.15234375 ], "wind_a": 0.0 }, "85452": { "creation_time": 1779580463821, "p": [ 21919.072265625, 17308.44921875, 49721.9375 ], "wind_a": 0.0 }, "85453": { "creation_time": 1779580463821, "p": [ 21945.935546875, 17288.5703125, 49655.78125 ], "wind_a": 0.0 }, "85454": { "creation_time": 1779580463821, "p": [ 21987.13671875, 17258.083984375, 49597.01171875 ], "wind_a": 0.0 }, "85455": { "creation_time": 1779580463821, "p": [ 22029.22265625, 17226.943359375, 49540.8984375 ], "wind_a": 0.0 }, "85456": { "creation_time": 1779580463821, "p": [ 22077.349609375, 17191.330078125, 49492.30078125 ], "wind_a": 0.0 }, "85457": { "creation_time": 1779580463821, "p": [ 22125.4765625, 17155.71875, 49443.70703125 ], "wind_a": 0.0 }, "85458": { "creation_time": 1779580463821, "p": [ 22170.951171875, 17122.0703125, 49387.13671875 ], "wind_a": 0.0 }, "85459": { "creation_time": 1779580463821, "p": [ 22212.150390625, 17091.58203125, 49328.3671875 ], "wind_a": 0.0 }, "85460": { "creation_time": 1779580463821, "p": [ 22251.21484375, 17062.677734375, 49268.49609375 ], "wind_a": 0.0 }, "85461": { "creation_time": 1779580463821, "p": [ 22289.02734375, 17034.697265625, 49210.18359375 ], "wind_a": 0.0 }, "85462": { "creation_time": 1779580463821, "p": [ 22332.365234375, 17002.62890625, 49152.51171875 ], "wind_a": 0.0 }, "85463": { "creation_time": 1779580463821, "p": [ 22377.12890625, 16969.505859375, 49099.12890625 ], "wind_a": 0.0 }, "85464": { "creation_time": 1779580463821, "p": [ 22418.671875, 16938.765625, 49041.38671875 ], "wind_a": 0.0 }, "85465": { "creation_time": 1779580463821, "p": [ 22465.9140625, 16903.80859375, 48990.13671875 ], "wind_a": 0.0 }, "85466": { "creation_time": 1779580463821, "p": [ 22520.2109375, 16863.630859375, 48960.0703125 ], "wind_a": 0.0 }, "85467": { "creation_time": 1779580463821, "p": [ 22578.263671875, 16820.673828125, 48941.27734375 ], "wind_a": 0.0 }, "85468": { "creation_time": 1779580463821, "p": [ 22637.56640625, 16776.79296875, 48926.2421875 ], "wind_a": 0.0 }, "85469": { "creation_time": 1779580463821, "p": [ 22691.86328125, 16736.615234375, 48896.17578125 ], "wind_a": 0.0 }, "85470": { "creation_time": 1779580463821, "p": [ 22742.833984375, 16698.8984375, 48856.1171875 ], "wind_a": 0.0 }, "85471": { "creation_time": 1779580463821, "p": [ 22773.3515625, 16676.31640625, 48791.84375 ], "wind_a": 0.0 }, "85472": { "creation_time": 1779580463821, "p": [ 22780.119140625, 16671.30859375, 48715.328125 ], "wind_a": 0.0 }, "85473": { "creation_time": 1779580463821, "p": [ 22780.119140625, 16671.30859375, 48635.328125 ], "wind_a": 0.0 }, "85474": { "creation_time": 1779580463821, "p": [ 22780.119140625, 16671.30859375, 48555.328125 ], "wind_a": 0.0 }, "85475": { "creation_time": 1779580463821, "p": [ 22771.0546875, 16678.015625, 48480.0 ], "wind_a": 0.0 }, "85476": { "creation_time": 1779580463821, "p": [ 22758.970703125, 16686.958984375, 48406.2265625 ], "wind_a": 0.0 }, "85477": { "creation_time": 1779580463821, "p": [ 22752.927734375, 16691.4296875, 48329.33984375 ], "wind_a": 0.0 }, "85478": { "creation_time": 1779580463821, "p": [ 22749.90625, 16693.666015625, 48250.8984375 ], "wind_a": 0.0 }, "85479": { "creation_time": 1779580463821, "p": [ 22734.80078125, 16704.84375, 48178.6796875 ], "wind_a": 0.0 }, "85480": { "creation_time": 1779580463821, "p": [ 22710.89453125, 16722.533203125, 48111.0 ], "wind_a": 0.0 }, "85481": { "creation_time": 1779580463821, "p": [ 22688.921875, 16738.79296875, 48042.32421875 ], "wind_a": 0.0 }, "85482": { "creation_time": 1779580463821, "p": [ 22665.3125, 16756.26171875, 47974.48828125 ], "wind_a": 0.0 }, "85483": { "creation_time": 1779580463821, "p": [ 22640.701171875, 16774.47265625, 47907.16796875 ], "wind_a": 0.0 }, "85484": { "creation_time": 1779580463821, "p": [ 22616.591796875, 16792.3125, 47839.59375 ], "wind_a": 0.0 }, "85485": { "creation_time": 1779580463821, "p": [ 22590.345703125, 16811.734375, 47773.1171875 ], "wind_a": 0.0 }, "85486": { "creation_time": 1779580463821, "p": [ 22565.61328125, 16830.03515625, 47705.859375 ], "wind_a": 0.0 }, "85487": { "creation_time": 1779580463821, "p": [ 22537.853515625, 16850.576171875, 47640.1640625 ], "wind_a": 0.0 }, "85488": { "creation_time": 1779580463821, "p": [ 22514.251953125, 16868.041015625, 47572.328125 ], "wind_a": 0.0 }, "85489": { "creation_time": 1779580463821, "p": [ 22502.16796875, 16876.982421875, 47498.5546875 ], "wind_a": 0.0 }, "85490": { "creation_time": 1779580463821, "p": [ 22505.1875, 16874.74609375, 47420.109375 ], "wind_a": 0.0 }, "85491": { "creation_time": 1779580463821, "p": [ 22511.23046875, 16870.275390625, 47343.22265625 ], "wind_a": 0.0 }, "85492": { "creation_time": 1779580463821, "p": [ 22511.23046875, 16870.275390625, 47263.22265625 ], "wind_a": 0.0 }, "85493": { "creation_time": 1779580463821, "p": [ 22508.208984375, 16872.51171875, 47184.78125 ], "wind_a": 0.0 }, "85494": { "creation_time": 1779580463821, "p": [ 22514.251953125, 16868.041015625, 47107.89453125 ], "wind_a": 0.0 }, "85495": { "creation_time": 1779580463821, "p": [ 22525.138671875, 16859.984375, 47033.50390625 ], "wind_a": 0.0 }, "85496": { "creation_time": 1779580463821, "p": [ 22538.421875, 16850.15625, 46960.34765625 ], "wind_a": 0.0 }, "85497": { "creation_time": 1779580463821, "p": [ 22550.505859375, 16841.212890625, 46907.984375 ], "wind_a": 0.0 } } } } }, "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ], "vc3d_volume_shape_zyx": [ 18946, 8174, 8174 ] }, "format": "tifxyz", "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "lasagna_job": { "config": { "args": { "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "init-mode": "shell-dir-crop", "mesh-step": 50.0, "model-h": 5000.0, "model-init": "seed", "model-w": 5000.0, "model-w-unit": "voxels", "seed": [ 5693.337890625, 4169.0791015625, 12197.9609375 ], "tifxyz-flow-gate-channels": true, "windings": 1 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "2280": { "color": [ 1.0, 0.7058823704719543, 0.3137255012989044 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap1938", "points": { "85445": { "creation_time": 1779580463821, "p": [ 5508.4697265625, 4305.8740234375, 12549.1455078125 ], "wind_a": 0.0 }, "85446": { "creation_time": 1779580463821, "p": [ 5497.72705078125, 4313.8232421875, 12535.7822265625 ], "wind_a": 0.0 }, "85447": { "creation_time": 1779580463821, "p": [ 5489.029296875, 4320.25927734375, 12520.263671875 ], "wind_a": 0.0 }, "85448": { "creation_time": 1779580463821, "p": [ 5481.27880859375, 4325.99462890625, 12504.2578125 ], "wind_a": 0.0 }, "85449": { "creation_time": 1779580463821, "p": [ 5475.3720703125, 4330.365234375, 12487.30078125 ], "wind_a": 0.0 }, "85450": { "creation_time": 1779580463821, "p": [ 5474.48095703125, 4331.0244140625, 12467.759765625 ], "wind_a": 0.0 }, "85451": { "creation_time": 1779580463821, "p": [ 5475.99169921875, 4329.90673828125, 12448.5380859375 ], "wind_a": 0.0 }, "85452": { "creation_time": 1779580463821, "p": [ 5479.76806640625, 4327.1123046875, 12430.484375 ], "wind_a": 0.0 }, "85453": { "creation_time": 1779580463821, "p": [ 5486.48388671875, 4322.142578125, 12413.9453125 ], "wind_a": 0.0 }, "85454": { "creation_time": 1779580463821, "p": [ 5496.7841796875, 4314.52099609375, 12399.2529296875 ], "wind_a": 0.0 }, "85455": { "creation_time": 1779580463821, "p": [ 5507.3056640625, 4306.73583984375, 12385.224609375 ], "wind_a": 0.0 }, "85456": { "creation_time": 1779580463821, "p": [ 5519.33740234375, 4297.83251953125, 12373.0751953125 ], "wind_a": 0.0 }, "85457": { "creation_time": 1779580463821, "p": [ 5531.369140625, 4288.9296875, 12360.9267578125 ], "wind_a": 0.0 }, "85458": { "creation_time": 1779580463821, "p": [ 5542.73779296875, 4280.517578125, 12346.7841796875 ], "wind_a": 0.0 }, "85459": { "creation_time": 1779580463821, "p": [ 5553.03759765625, 4272.8955078125, 12332.091796875 ], "wind_a": 0.0 }, "85460": { "creation_time": 1779580463821, "p": [ 5562.8037109375, 4265.66943359375, 12317.1240234375 ], "wind_a": 0.0 }, "85461": { "creation_time": 1779580463821, "p": [ 5572.2568359375, 4258.67431640625, 12302.5458984375 ], "wind_a": 0.0 }, "85462": { "creation_time": 1779580463821, "p": [ 5583.09130859375, 4250.6572265625, 12288.1279296875 ], "wind_a": 0.0 }, "85463": { "creation_time": 1779580463821, "p": [ 5594.2822265625, 4242.37646484375, 12274.7822265625 ], "wind_a": 0.0 }, "85464": { "creation_time": 1779580463821, "p": [ 5604.66796875, 4234.69140625, 12260.3466796875 ], "wind_a": 0.0 }, "85465": { "creation_time": 1779580463821, "p": [ 5616.478515625, 4225.9521484375, 12247.5341796875 ], "wind_a": 0.0 }, "85466": { "creation_time": 1779580463821, "p": [ 5630.052734375, 4215.90771484375, 12240.017578125 ], "wind_a": 0.0 }, "85467": { "creation_time": 1779580463821, "p": [ 5644.56591796875, 4205.16845703125, 12235.3193359375 ], "wind_a": 0.0 }, "85468": { "creation_time": 1779580463821, "p": [ 5659.3916015625, 4194.1982421875, 12231.560546875 ], "wind_a": 0.0 }, "85469": { "creation_time": 1779580463821, "p": [ 5672.9658203125, 4184.15380859375, 12224.0439453125 ], "wind_a": 0.0 }, "85470": { "creation_time": 1779580463821, "p": [ 5685.70849609375, 4174.724609375, 12214.029296875 ], "wind_a": 0.0 }, "85471": { "creation_time": 1779580463821, "p": [ 5693.337890625, 4169.0791015625, 12197.9609375 ], "wind_a": 0.0 }, "85472": { "creation_time": 1779580463821, "p": [ 5695.02978515625, 4167.8271484375, 12178.83203125 ], "wind_a": 0.0 }, "85473": { "creation_time": 1779580463821, "p": [ 5695.02978515625, 4167.8271484375, 12158.83203125 ], "wind_a": 0.0 }, "85474": { "creation_time": 1779580463821, "p": [ 5695.02978515625, 4167.8271484375, 12138.83203125 ], "wind_a": 0.0 }, "85475": { "creation_time": 1779580463821, "p": [ 5692.763671875, 4169.50390625, 12120.0 ], "wind_a": 0.0 }, "85476": { "creation_time": 1779580463821, "p": [ 5689.74267578125, 4171.73974609375, 12101.556640625 ], "wind_a": 0.0 }, "85477": { "creation_time": 1779580463821, "p": [ 5688.23193359375, 4172.857421875, 12082.3349609375 ], "wind_a": 0.0 }, "85478": { "creation_time": 1779580463821, "p": [ 5687.4765625, 4173.41650390625, 12062.724609375 ], "wind_a": 0.0 }, "85479": { "creation_time": 1779580463821, "p": [ 5683.7001953125, 4176.2109375, 12044.669921875 ], "wind_a": 0.0 }, "85480": { "creation_time": 1779580463821, "p": [ 5677.7236328125, 4180.63330078125, 12027.75 ], "wind_a": 0.0 }, "85481": { "creation_time": 1779580463821, "p": [ 5672.23046875, 4184.6982421875, 12010.5810546875 ], "wind_a": 0.0 }, "85482": { "creation_time": 1779580463821, "p": [ 5666.328125, 4189.0654296875, 11993.6220703125 ], "wind_a": 0.0 }, "85483": { "creation_time": 1779580463821, "p": [ 5660.17529296875, 4193.6181640625, 11976.7919921875 ], "wind_a": 0.0 }, "85484": { "creation_time": 1779580463821, "p": [ 5654.14794921875, 4198.078125, 11959.8984375 ], "wind_a": 0.0 }, "85485": { "creation_time": 1779580463821, "p": [ 5647.58642578125, 4202.93359375, 11943.279296875 ], "wind_a": 0.0 }, "85486": { "creation_time": 1779580463821, "p": [ 5641.4033203125, 4207.5087890625, 11926.46484375 ], "wind_a": 0.0 }, "85487": { "creation_time": 1779580463821, "p": [ 5634.46337890625, 4212.64404296875, 11910.041015625 ], "wind_a": 0.0 }, "85488": { "creation_time": 1779580463821, "p": [ 5628.56298828125, 4217.01025390625, 11893.08203125 ], "wind_a": 0.0 }, "85489": { "creation_time": 1779580463821, "p": [ 5625.5419921875, 4219.24560546875, 11874.638671875 ], "wind_a": 0.0 }, "85490": { "creation_time": 1779580463821, "p": [ 5626.296875, 4218.6865234375, 11855.02734375 ], "wind_a": 0.0 }, "85491": { "creation_time": 1779580463821, "p": [ 5627.8076171875, 4217.56884765625, 11835.8056640625 ], "wind_a": 0.0 }, "85492": { "creation_time": 1779580463821, "p": [ 5627.8076171875, 4217.56884765625, 11815.8056640625 ], "wind_a": 0.0 }, "85493": { "creation_time": 1779580463821, "p": [ 5627.05224609375, 4218.1279296875, 11796.1953125 ], "wind_a": 0.0 }, "85494": { "creation_time": 1779580463821, "p": [ 5628.56298828125, 4217.01025390625, 11776.9736328125 ], "wind_a": 0.0 }, "85495": { "creation_time": 1779580463821, "p": [ 5631.28466796875, 4214.99609375, 11758.3759765625 ], "wind_a": 0.0 }, "85496": { "creation_time": 1779580463821, "p": [ 5634.60546875, 4212.5390625, 11740.0869140625 ], "wind_a": 0.0 }, "85497": { "creation_time": 1779580463821, "p": [ 5637.62646484375, 4210.30322265625, 11726.99609375 ], "wind_a": 0.0 } } } } }, "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ] }, "linked_surfaces": [], "model": null, "volume_shape_zyx": [ 18946, 8174, 8174 ] }, "model_source": "/tmp/fit_reopt_ov4pxz8p/model_reopt.pt", "scale": [ 0.07999999821186066, 0.07999999821186066 ], "tags": { "date_last_modified": "20260614185644432", "reviewed": { "date": "20260604080934250" } }, "type": "seg", "uuid": "same_wrap001938_lasagna" }