{ "area_vx2": 803593.75, "base_shape_zyx": [ 18946, 8174, 8174 ], "bbox": [ [ 5949.97607421875, 4070.164794921875, 8914.7978515625 ], [ 6250.26416015625, 4632.07470703125, 9807.982421875 ] ], "extra_channels": [ { "dtype": "float32", "file": "flow_gate_local_contrast.tif", "name": "flow_gate_local_contrast", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.local_contrast", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } }, { "dtype": "float32", "file": "flow_gate_component_normalized.tif", "name": "flow_gate_component_normalized", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.component_normalized", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } } ], "fit_config": { "_corr_point_roi_init_": { "effective_seed": [ 24607.953125, 17445.66796875, 38425.0703125 ], "final_anchor_h": 230.59079670906067, "final_anchor_w": 55.82018484175205, "final_shell_id": "shell_0003.tifxyz", "final_trim_bottom": 28, "final_trim_top": 0, "init_margin_grid_points": 80, "initial_seed": [ 24607.953125, 17445.66796875, 38425.0703125 ], "initial_shell_id": "shell_0003.tifxyz", "initial_skipped_point_count": 0, "initial_skipped_reasons": {}, "initial_trim_bottom": 28, "initial_trim_top": 0, "initial_usable_point_count": 52, "mode": "corr-point-roi", "model_h": 9021.693420410156, "model_w": 8494.143867492676, "model_w_unit": "voxels", "output_radius_grid_points": 20, "parsed_point_count": 52, "projected_h_span_grid": 20.433868408203125, "projected_h_span_vx": 1021.6934204101563, "projected_points": [ { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 8.468164917736374, "h": 236.91590881347656, "point_id": 89462, "row_index": 0, "w": 61.450706481933594 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 10.218986355067551, "h": 240.79022216796875, "point_id": 89463, "row_index": 1, "w": 55.188201904296875 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 9.72658309352455, "h": 240.3098602294922, "point_id": 89464, "row_index": 2, "w": 55.43779373168945 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 9.313799272127662, "h": 239.9031524658203, "point_id": 89465, "row_index": 3, "w": 55.656211853027344 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 8.920090573015479, "h": 239.51080322265625, "point_id": 89466, "row_index": 4, "w": 55.78145980834961 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 8.384237549573482, "h": 238.97482299804688, "point_id": 89467, "row_index": 5, "w": 55.879703521728516 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 5.297415640169864, "h": 233.7499237060547, "point_id": 89468, "row_index": 6, "w": 51.56782913208008 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 7.283858716539934, "h": 237.8740692138672, "point_id": 89469, "row_index": 7, "w": 55.912593841552734 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 6.568518464756933, "h": 237.1591796875, "point_id": 89470, "row_index": 8, "w": 55.86237335205078 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 5.88464106368649, "h": 236.47523498535156, "point_id": 89471, "row_index": 9, "w": 55.771331787109375 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 5.331805679738772, "h": 235.9207305908203, "point_id": 89472, "row_index": 10, "w": 55.678916931152344 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 5.2761129268050055, "h": 235.86294555664063, "point_id": 89473, "row_index": 11, "w": 55.615699768066406 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 5.4171837906274005, "h": 236.0049591064453, "point_id": 89474, "row_index": 12, "w": 55.6392822265625 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 5.38929265702303, "h": 235.979736328125, "point_id": 89475, "row_index": 13, "w": 55.75849914550781 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 4.561576187187668, "h": 235.15138244628906, "point_id": 89476, "row_index": 14, "w": 55.72513198852539 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 4.093435749338523, "h": 234.6819610595703, "point_id": 89477, "row_index": 15, "w": 55.683837890625 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 3.7303774541646386, "h": 234.31504821777344, "point_id": 89478, "row_index": 16, "w": 55.60648727416992 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 3.3351235707687303, "h": 233.91624450683594, "point_id": 89479, "row_index": 17, "w": 55.566322326660156 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 3.183612007535285, "h": 233.76495361328125, "point_id": 89480, "row_index": 18, "w": 55.57500457763672 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 2.8779380238343526, "h": 233.4579620361328, "point_id": 89481, "row_index": 19, "w": 55.571407318115234 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 2.605033914985979, "h": 233.1866455078125, "point_id": 89482, "row_index": 20, "w": 55.601619720458984 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 2.191550119548177, "h": 232.7780303955078, "point_id": 89483, "row_index": 21, "w": 55.68270492553711 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 1.697223627514171, "h": 232.2843780517578, "point_id": 89484, "row_index": 22, "w": 55.70905303955078 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 1.2168749323355164, "h": 231.8032989501953, "point_id": 89485, "row_index": 23, "w": 55.71711730957031 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 0.7948784481154433, "h": 231.37564086914063, "point_id": 89486, "row_index": 24, "w": 55.69428253173828 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 0.4208470508055478, "h": 230.99520874023438, "point_id": 89487, "row_index": 25, "w": 55.7037239074707 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 0.0928384039257207, "h": 230.56666564941406, "point_id": 89488, "row_index": 26, "w": 55.73053741455078 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 0.4748703946790557, "h": 230.1259002685547, "point_id": 89489, "row_index": 27, "w": 55.72336959838867 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 0.8810136750200177, "h": 229.71548461914063, "point_id": 89490, "row_index": 28, "w": 55.720115661621094 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 0.7169067279560986, "h": 229.87564086914063, "point_id": 89491, "row_index": 29, "w": 55.770111083984375 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 1.5577079216568162, "h": 229.03390502929688, "point_id": 89492, "row_index": 30, "w": 55.7697639465332 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 1.975447461395202, "h": 228.61563110351563, "point_id": 89493, "row_index": 31, "w": 55.78681564331055 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 2.409449030544317, "h": 228.18150329589844, "point_id": 89494, "row_index": 32, "w": 55.79280090332031 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 2.879704557033307, "h": 227.7115936279297, "point_id": 89495, "row_index": 33, "w": 55.76644515991211 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 3.3191612090925733, "h": 227.27293395996094, "point_id": 89496, "row_index": 34, "w": 55.727352142333984 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 3.7617360912824163, "h": 226.83181762695313, "point_id": 89497, "row_index": 35, "w": 55.67618942260742 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 4.325565909823309, "h": 226.26930236816406, "point_id": 89498, "row_index": 36, "w": 55.63254928588867 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 4.785808600612125, "h": 225.8095703125, "point_id": 89499, "row_index": 37, "w": 55.610809326171875 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 5.330449548295511, "h": 225.268310546875, "point_id": 89500, "row_index": 38, "w": 55.52892303466797 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 5.711664361736688, "h": 224.8977508544922, "point_id": 89501, "row_index": 39, "w": 55.35938262939453 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 5.08845536187575, "h": 225.50778198242188, "point_id": 89502, "row_index": 40, "w": 55.58494186401367 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 4.643992393800289, "h": 225.94688415527344, "point_id": 89503, "row_index": 41, "w": 55.79295349121094 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 4.825074454045103, "h": 225.77011108398438, "point_id": 89504, "row_index": 42, "w": 56.025936126708984 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 5.899855571520284, "h": 224.69749450683594, "point_id": 89505, "row_index": 43, "w": 56.09818649291992 }, { "collection_id": 871, "direction_sign": 1, "grid_distance_to_anchor": 6.703827230053961, "h": 223.895263671875, "point_id": 89506, "row_index": 44, "w": 56.15355682373047 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 7.3878932002765705, "h": 223.21075439453125, "point_id": 89507, "row_index": 45, "w": 56.16068649291992 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 7.9344237747540625, "h": 222.66456604003906, "point_id": 89508, "row_index": 46, "w": 56.180667877197266 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 8.529838279504686, "h": 222.0669403076172, "point_id": 89509, "row_index": 47, "w": 56.13957977294922 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 9.027972866912592, "h": 221.5664825439453, "point_id": 89510, "row_index": 48, "w": 56.07718276977539 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 8.986006837434086, "h": 221.60977172851563, "point_id": 89511, "row_index": 49, "w": 56.11936569213867 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 10.221828114082994, "h": 220.37542724609375, "point_id": 89512, "row_index": 50, "w": 56.18349838256836 }, { "collection_id": 871, "direction_sign": -1, "grid_distance_to_anchor": 10.24088632370271, "h": 220.35635375976563, "point_id": 89513, "row_index": 51, "w": 56.183406829833984 } ], "projected_w_span_grid": 9.882877349853516, "projected_w_span_vx": 494.1438674926758, "projection_mode": "normal-line", "skipped_point_count": 0, "skipped_points": [], "skipped_reasons": {}, "usable_point_count": 52, "windings": 1 }, "args": { "approval-inpaint": false, "approval-inpaint-corr-spacing": null, "approval-inpaint-output-mask": false, "approval-inpaint-output-mask-dilate": 3, "approval-inpaint-padding-frac": 0.25, "approval-inpaint-tifxyz": null, "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "crop": null, "cuda-gridsample": 1, "depth": 1, "device": "cuda", "downscale": 4.0, "erode-valid-mask": 0, "flatten-solver": "torch", "init-mode": "shell-dir-crop", "input": "/ephemeral/lasag_strip_outputs/.lasagna_point_strip_work/collection_871/point_strip.lasagna.json", "mesh-h": 32, "mesh-step": 50, "mesh-w": 32, "model-h": 9021.693420410156, "model-init": "seed", "model-input": null, "model-output": "/tmp/fit_reopt_8bwa2ovg/model_reopt.pt", "model-w": 8494.143867492676, "model-w-unit": "voxels", "normal-mask-zero": 0, "out-dir": null, "progress": true, "pyramid-d": false, "seed": [ 24607.953125, 17445.66796875, 38425.0703125 ], "snapshot-interval": 1000, "sparse-prefetch-backend": "tensorstore", "subsample-mesh": 4, "subsample-winding": 4, "tifxyz-flow-gate-channels": true, "tifxyz-init": null, "winding-step": 25, "winding-volume": null, "windings": 1, "z-center": 0.0 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "871": { "color": [ 0.7058823704719543, 1.0, 0.3137255012989044 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap2046", "points": { "89462": { "creation_time": 1779581621788, "p": [ 24582.166015625, 17438.673828125, 40237.0234375 ], "wind_a": 0.0 }, "89463": { "creation_time": 1779581621788, "p": [ 24626.8359375, 17450.791015625, 40184.40625 ], "wind_a": 0.0 }, "89464": { "creation_time": 1779581621788, "p": [ 24669.220703125, 17462.287109375, 40126.3046875 ], "wind_a": 0.0 }, "89465": { "creation_time": 1779581621788, "p": [ 24694.21484375, 17469.06640625, 40057.03125 ], "wind_a": 0.0 }, "89466": { "creation_time": 1779581621788, "p": [ 24702.642578125, 17471.3515625, 39980.6484375 ], "wind_a": 0.0 }, "89467": { "creation_time": 1779581621788, "p": [ 24716.376953125, 17475.076171875, 39906.54296875 ], "wind_a": 0.0 }, "89468": { "creation_time": 1779581621788, "p": [ 24720.00390625, 17476.060546875, 39828.1015625 ], "wind_a": 0.0 }, "89469": { "creation_time": 1779581621788, "p": [ 24712.75, 17474.091796875, 39751.2109375 ], "wind_a": 0.0 }, "89470": { "creation_time": 1779581621788, "p": [ 24678.005859375, 17464.669921875, 39686.125 ], "wind_a": 0.0 }, "89471": { "creation_time": 1779581621788, "p": [ 24633.669921875, 17452.64453125, 39625.15234375 ], "wind_a": 0.0 }, "89472": { "creation_time": 1779581621788, "p": [ 24582.166015625, 17438.673828125, 39569.4609375 ], "wind_a": 0.0 }, "89473": { "creation_time": 1779581621788, "p": [ 24538.8046875, 17426.9140625, 39508.0703125 ], "wind_a": 0.0 }, "89474": { "creation_time": 1779581621788, "p": [ 24502.36328125, 17417.029296875, 39443.70703125 ], "wind_a": 0.0 }, "89475": { "creation_time": 1779581621788, "p": [ 24524.12890625, 17422.93359375, 39373.046875 ], "wind_a": 0.0 }, "89476": { "creation_time": 1779581621788, "p": [ 24520.5, 17421.94921875, 39297.71875 ], "wind_a": 0.0 }, "89477": { "creation_time": 1779581621788, "p": [ 24495.109375, 17415.0625, 39228.6171875 ], "wind_a": 0.0 }, "89478": { "creation_time": 1779581621788, "p": [ 24473.345703125, 17409.16015625, 39157.95703125 ], "wind_a": 0.0 }, "89479": { "creation_time": 1779581621788, "p": [ 24466.08984375, 17407.19140625, 39081.0703125 ], "wind_a": 0.0 }, "89480": { "creation_time": 1779581621788, "p": [ 24471.279296875, 17408.599609375, 39006.41015625 ], "wind_a": 0.0 }, "89481": { "creation_time": 1779581621788, "p": [ 24487.40234375, 17412.97265625, 38933.328125 ], "wind_a": 0.0 }, "89482": { "creation_time": 1779581621788, "p": [ 24513.78515625, 17420.126953125, 38864.65234375 ], "wind_a": 0.0 }, "89483": { "creation_time": 1779581621788, "p": [ 24542.73046875, 17427.978515625, 38797.078125 ], "wind_a": 0.0 }, "89484": { "creation_time": 1779581621788, "p": [ 24567.65625, 17434.73828125, 38727.7734375 ], "wind_a": 0.0 }, "89485": { "creation_time": 1779581621788, "p": [ 24587.80078125, 17440.203125, 38656.41796875 ], "wind_a": 0.0 }, "89486": { "creation_time": 1779581621788, "p": [ 24598.79296875, 17443.18359375, 38581.13671875 ], "wind_a": 0.0 }, "89487": { "creation_time": 1779581621788, "p": [ 24603.9296875, 17444.578125, 38503.33984375 ], "wind_a": 0.0 }, "89488": { "creation_time": 1779581621788, "p": [ 24607.953125, 17445.66796875, 38425.0703125 ], "wind_a": 0.0 }, "89489": { "creation_time": 1779581621788, "p": [ 24607.556640625, 17445.560546875, 38348.01171875 ], "wind_a": 0.0 }, "89490": { "creation_time": 1779581621788, "p": [ 24608.173828125, 17445.728515625, 38274.50390625 ], "wind_a": 0.0 }, "89491": { "creation_time": 1779581621788, "p": [ 24614.4765625, 17447.4375, 38200.3203125 ], "wind_a": 0.0 }, "89492": { "creation_time": 1779581621788, "p": [ 24614.810546875, 17447.529296875, 38120.46484375 ], "wind_a": 0.0 }, "89493": { "creation_time": 1779581621788, "p": [ 24618.439453125, 17448.513671875, 38042.0234375 ], "wind_a": 0.0 }, "89494": { "creation_time": 1779581621788, "p": [ 24618.439453125, 17448.513671875, 37962.0234375 ], "wind_a": 0.0 }, "89495": { "creation_time": 1779581621788, "p": [ 24618.439453125, 17448.513671875, 37882.0234375 ], "wind_a": 0.0 }, "89496": { "creation_time": 1779581621788, "p": [ 24614.810546875, 17447.529296875, 37803.578125 ], "wind_a": 0.0 }, "89497": { "creation_time": 1779581621788, "p": [ 24603.9296875, 17444.578125, 37728.25 ], "wind_a": 0.0 }, "89498": { "creation_time": 1779581621788, "p": [ 24583.92578125, 17439.15234375, 37656.8359375 ], "wind_a": 0.0 }, "89499": { "creation_time": 1779581621788, "p": [ 24557.544921875, 17431.99609375, 37588.15625 ], "wind_a": 0.0 }, "89500": { "creation_time": 1779581621788, "p": [ 24533.728515625, 17425.537109375, 37518.37890625 ], "wind_a": 0.0 }, "89501": { "creation_time": 1779581621788, "p": [ 24499.650390625, 17416.294921875, 37453.00390625 ], "wind_a": 0.0 }, "89502": { "creation_time": 1779581621788, "p": [ 24495.109375, 17415.0625, 37378.06640625 ], "wind_a": 0.0 }, "89503": { "creation_time": 1779581621788, "p": [ 24533.51171875, 17425.478515625, 37314.546875 ], "wind_a": 0.0 }, "89504": { "creation_time": 1779581621788, "p": [ 24593.419921875, 17441.7265625, 37271.265625 ], "wind_a": 0.0 }, "89505": { "creation_time": 1779581621788, "p": [ 24647.576171875, 17456.416015625, 37218.9140625 ], "wind_a": 0.0 }, "89506": { "creation_time": 1779581621788, "p": [ 24680.103515625, 17465.23828125, 37152.875 ], "wind_a": 0.0 }, "89507": { "creation_time": 1779581621788, "p": [ 24683.73046875, 17466.22265625, 37077.54296875 ], "wind_a": 0.0 }, "89508": { "creation_time": 1779581621788, "p": [ 24668.513671875, 17462.09375, 37004.07421875 ], "wind_a": 0.0 }, "89509": { "creation_time": 1779581621788, "p": [ 24637.001953125, 17453.546875, 36937.59765625 ], "wind_a": 0.0 }, "89510": { "creation_time": 1779581621788, "p": [ 24600.302734375, 17443.59375, 36873.34765625 ], "wind_a": 0.0 }, "89511": { "creation_time": 1779581621788, "p": [ 24567.65625, 17434.73828125, 36807.359375 ], "wind_a": 0.0 }, "89512": { "creation_time": 1779581621788, "p": [ 24556.7734375, 17431.787109375, 36732.03125 ], "wind_a": 0.0 }, "89513": { "creation_time": 1779581621788, "p": [ 24556.7734375, 17431.787109375, 36726.6875 ], "wind_a": 0.0 } } } } }, "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ], "vc3d_volume_shape_zyx": [ 18946, 8174, 8174 ] }, "format": "tifxyz", "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "lasagna_job": { "config": { "args": { "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "init-mode": "shell-dir-crop", "mesh-step": 50.0, "model-h": 5000.0, "model-init": "seed", "model-w": 5000.0, "model-w-unit": "voxels", "seed": [ 6151.98828125, 4361.4169921875, 9606.267578125 ], "tifxyz-flow-gate-channels": true, "windings": 1 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "871": { "color": [ 0.7058823704719543, 1.0, 0.3137255012989044 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap2046", "points": { "89462": { "creation_time": 1779581621788, "p": [ 6145.54150390625, 4359.66845703125, 10059.255859375 ], "wind_a": 0.0 }, "89463": { "creation_time": 1779581621788, "p": [ 6156.708984375, 4362.69775390625, 10046.1015625 ], "wind_a": 0.0 }, "89464": { "creation_time": 1779581621788, "p": [ 6167.30517578125, 4365.57177734375, 10031.576171875 ], "wind_a": 0.0 }, "89465": { "creation_time": 1779581621788, "p": [ 6173.5537109375, 4367.2666015625, 10014.2578125 ], "wind_a": 0.0 }, "89466": { "creation_time": 1779581621788, "p": [ 6175.66064453125, 4367.837890625, 9995.162109375 ], "wind_a": 0.0 }, "89467": { "creation_time": 1779581621788, "p": [ 6179.09423828125, 4368.76904296875, 9976.6357421875 ], "wind_a": 0.0 }, "89468": { "creation_time": 1779581621788, "p": [ 6180.0009765625, 4369.01513671875, 9957.025390625 ], "wind_a": 0.0 }, "89469": { "creation_time": 1779581621788, "p": [ 6178.1875, 4368.52294921875, 9937.802734375 ], "wind_a": 0.0 }, "89470": { "creation_time": 1779581621788, "p": [ 6169.50146484375, 4366.16748046875, 9921.53125 ], "wind_a": 0.0 }, "89471": { "creation_time": 1779581621788, "p": [ 6158.41748046875, 4363.1611328125, 9906.2880859375 ], "wind_a": 0.0 }, "89472": { "creation_time": 1779581621788, "p": [ 6145.54150390625, 4359.66845703125, 9892.365234375 ], "wind_a": 0.0 }, "89473": { "creation_time": 1779581621788, "p": [ 6134.701171875, 4356.728515625, 9877.017578125 ], "wind_a": 0.0 }, "89474": { "creation_time": 1779581621788, "p": [ 6125.5908203125, 4354.25732421875, 9860.9267578125 ], "wind_a": 0.0 }, "89475": { "creation_time": 1779581621788, "p": [ 6131.0322265625, 4355.7333984375, 9843.26171875 ], "wind_a": 0.0 }, "89476": { "creation_time": 1779581621788, "p": [ 6130.125, 4355.4873046875, 9824.4296875 ], "wind_a": 0.0 }, "89477": { "creation_time": 1779581621788, "p": [ 6123.77734375, 4353.765625, 9807.154296875 ], "wind_a": 0.0 }, "89478": { "creation_time": 1779581621788, "p": [ 6118.33642578125, 4352.2900390625, 9789.4892578125 ], "wind_a": 0.0 }, "89479": { "creation_time": 1779581621788, "p": [ 6116.5224609375, 4351.7978515625, 9770.267578125 ], "wind_a": 0.0 }, "89480": { "creation_time": 1779581621788, "p": [ 6117.81982421875, 4352.14990234375, 9751.6025390625 ], "wind_a": 0.0 }, "89481": { "creation_time": 1779581621788, "p": [ 6121.8505859375, 4353.2431640625, 9733.33203125 ], "wind_a": 0.0 }, "89482": { "creation_time": 1779581621788, "p": [ 6128.4462890625, 4355.03173828125, 9716.1630859375 ], "wind_a": 0.0 }, "89483": { "creation_time": 1779581621788, "p": [ 6135.6826171875, 4356.99462890625, 9699.26953125 ], "wind_a": 0.0 }, "89484": { "creation_time": 1779581621788, "p": [ 6141.9140625, 4358.6845703125, 9681.943359375 ], "wind_a": 0.0 }, "89485": { "creation_time": 1779581621788, "p": [ 6146.9501953125, 4360.05078125, 9664.1044921875 ], "wind_a": 0.0 }, "89486": { "creation_time": 1779581621788, "p": [ 6149.6982421875, 4360.7958984375, 9645.2841796875 ], "wind_a": 0.0 }, "89487": { "creation_time": 1779581621788, "p": [ 6150.982421875, 4361.14453125, 9625.8349609375 ], "wind_a": 0.0 }, "89488": { "creation_time": 1779581621788, "p": [ 6151.98828125, 4361.4169921875, 9606.267578125 ], "wind_a": 0.0 }, "89489": { "creation_time": 1779581621788, "p": [ 6151.88916015625, 4361.39013671875, 9587.0029296875 ], "wind_a": 0.0 }, "89490": { "creation_time": 1779581621788, "p": [ 6152.04345703125, 4361.43212890625, 9568.6259765625 ], "wind_a": 0.0 }, "89491": { "creation_time": 1779581621788, "p": [ 6153.619140625, 4361.859375, 9550.080078125 ], "wind_a": 0.0 }, "89492": { "creation_time": 1779581621788, "p": [ 6153.70263671875, 4361.88232421875, 9530.1162109375 ], "wind_a": 0.0 }, "89493": { "creation_time": 1779581621788, "p": [ 6154.60986328125, 4362.12841796875, 9510.505859375 ], "wind_a": 0.0 }, "89494": { "creation_time": 1779581621788, "p": [ 6154.60986328125, 4362.12841796875, 9490.505859375 ], "wind_a": 0.0 }, "89495": { "creation_time": 1779581621788, "p": [ 6154.60986328125, 4362.12841796875, 9470.505859375 ], "wind_a": 0.0 }, "89496": { "creation_time": 1779581621788, "p": [ 6153.70263671875, 4361.88232421875, 9450.89453125 ], "wind_a": 0.0 }, "89497": { "creation_time": 1779581621788, "p": [ 6150.982421875, 4361.14453125, 9432.0625 ], "wind_a": 0.0 }, "89498": { "creation_time": 1779581621788, "p": [ 6145.9814453125, 4359.7880859375, 9414.208984375 ], "wind_a": 0.0 }, "89499": { "creation_time": 1779581621788, "p": [ 6139.38623046875, 4357.9990234375, 9397.0390625 ], "wind_a": 0.0 }, "89500": { "creation_time": 1779581621788, "p": [ 6133.43212890625, 4356.38427734375, 9379.5947265625 ], "wind_a": 0.0 }, "89501": { "creation_time": 1779581621788, "p": [ 6124.91259765625, 4354.07373046875, 9363.2509765625 ], "wind_a": 0.0 }, "89502": { "creation_time": 1779581621788, "p": [ 6123.77734375, 4353.765625, 9344.5166015625 ], "wind_a": 0.0 }, "89503": { "creation_time": 1779581621788, "p": [ 6133.3779296875, 4356.36962890625, 9328.63671875 ], "wind_a": 0.0 }, "89504": { "creation_time": 1779581621788, "p": [ 6148.35498046875, 4360.431640625, 9317.81640625 ], "wind_a": 0.0 }, "89505": { "creation_time": 1779581621788, "p": [ 6161.89404296875, 4364.10400390625, 9304.728515625 ], "wind_a": 0.0 }, "89506": { "creation_time": 1779581621788, "p": [ 6170.02587890625, 4366.3095703125, 9288.21875 ], "wind_a": 0.0 }, "89507": { "creation_time": 1779581621788, "p": [ 6170.9326171875, 4366.5556640625, 9269.3857421875 ], "wind_a": 0.0 }, "89508": { "creation_time": 1779581621788, "p": [ 6167.12841796875, 4365.5234375, 9251.0185546875 ], "wind_a": 0.0 }, "89509": { "creation_time": 1779581621788, "p": [ 6159.25048828125, 4363.38671875, 9234.3994140625 ], "wind_a": 0.0 }, "89510": { "creation_time": 1779581621788, "p": [ 6150.07568359375, 4360.8984375, 9218.3369140625 ], "wind_a": 0.0 }, "89511": { "creation_time": 1779581621788, "p": [ 6141.9140625, 4358.6845703125, 9201.83984375 ], "wind_a": 0.0 }, "89512": { "creation_time": 1779581621788, "p": [ 6139.193359375, 4357.94677734375, 9183.0078125 ], "wind_a": 0.0 }, "89513": { "creation_time": 1779581621788, "p": [ 6139.193359375, 4357.94677734375, 9181.671875 ], "wind_a": 0.0 } } } } }, "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ] }, "linked_surfaces": [], "model": null, "volume_shape_zyx": [ 18946, 8174, 8174 ] }, "model_source": "/tmp/fit_reopt_8bwa2ovg/model_reopt.pt", "scale": [ 0.07999999821186066, 0.07999999821186066 ], "tags": { "date_last_modified": "20260614185644479", "reviewed": { "date": "20260604080934260" } }, "type": "seg", "uuid": "same_wrap002046_lasagna" }