{ "area_vx2": 1060156.25, "base_shape_zyx": [ 18946, 8174, 8174 ], "bbox": [ [ 5642.0400390625, 3538.997314453125, 12950.1796875 ], [ 6784.76904296875, 4597.42431640625, 13477.47265625 ] ], "extra_channels": [ { "dtype": "float32", "file": "flow_gate_local_contrast.tif", "name": "flow_gate_local_contrast", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.local_contrast", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } }, { "dtype": "float32", "file": "flow_gate_component_normalized.tif", "name": "flow_gate_component_normalized", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.component_normalized", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } } ], "fit_config": { "_corr_point_roi_init_": { "effective_seed": [ 25163.68359375, 15418.48828125, 52891.5859375 ], "final_anchor_h": 304.7153351306915, "final_anchor_w": 52.8395699262619, "final_shell_id": "shell_0004.tifxyz", "final_trim_bottom": 35, "final_trim_top": 0, "init_margin_grid_points": 80, "initial_seed": [ 25163.68359375, 15418.48828125, 52891.5859375 ], "initial_shell_id": "shell_0004.tifxyz", "initial_skipped_point_count": 0, "initial_skipped_reasons": {}, "initial_trim_bottom": 35, "initial_trim_top": 0, "initial_usable_point_count": 77, "mode": "corr-point-roi", "model_h": 8183.0963134765625, "model_w": 9335.762786865234, "model_w_unit": "voxels", "output_radius_grid_points": 20, "parsed_point_count": 77, "projected_h_span_grid": 3.66192626953125, "projected_h_span_vx": 183.0963134765625, "projected_points": [ { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 13.53832484555782, "h": 306.64837646484375, "point_id": 109214, "row_index": 0, "w": 66.23918151855469 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 13.195126530045165, "h": 306.6256408691406, "point_id": 109215, "row_index": 1, "w": 65.89568328857422 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 12.879223594512212, "h": 306.5782470703125, "point_id": 109216, "row_index": 2, "w": 65.5833511352539 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 12.564948817522977, "h": 306.537353515625, "point_id": 109217, "row_index": 3, "w": 65.27171325683594 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 12.304787273246367, "h": 306.4770202636719, "point_id": 109218, "row_index": 4, "w": 65.01759338378906 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 12.019157844938725, "h": 306.3702697753906, "point_id": 109219, "row_index": 5, "w": 64.74424743652344 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 11.697110192881258, "h": 306.3714599609375, "point_id": 109220, "row_index": 6, "w": 64.4188461303711 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 11.369253345759052, "h": 306.3501281738281, "point_id": 109221, "row_index": 7, "w": 64.0906753540039 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 11.027027788537591, "h": 306.3555603027344, "point_id": 109222, "row_index": 8, "w": 63.743927001953125 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 10.63407366199332, "h": 306.2377014160156, "point_id": 109223, "row_index": 9, "w": 63.36410903930664 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 10.220988878183272, "h": 306.1345520019531, "point_id": 109224, "row_index": 10, "w": 62.9615478515625 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 9.85123197337741, "h": 306.1304626464844, "point_id": 109225, "row_index": 11, "w": 62.58863067626953 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 9.474870693012138, "h": 305.9892578125, "point_id": 109226, "row_index": 12, "w": 62.22840881347656 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 9.082500350982807, "h": 305.7543029785156, "point_id": 109227, "row_index": 13, "w": 61.862449645996094 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 8.695291434810551, "h": 305.52227783203125, "point_id": 109228, "row_index": 14, "w": 61.497337341308594 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 8.315923987735696, "h": 305.36981201171875, "point_id": 109229, "row_index": 15, "w": 61.12969970703125 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 7.943674217783236, "h": 305.23138427734375, "point_id": 109230, "row_index": 16, "w": 60.76646423339844 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 7.583776415019619, "h": 305.12017822265625, "point_id": 109231, "row_index": 17, "w": 60.412532806396484 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 7.273000532514689, "h": 305.0934753417969, "point_id": 109232, "row_index": 18, "w": 60.10273361206055 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 6.987240506450911, "h": 305.11993408203125, "point_id": 109233, "row_index": 19, "w": 59.815086364746094 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 6.611167321944692, "h": 305.08782958984375, "point_id": 109234, "row_index": 20, "w": 59.44023513793945 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 6.240887713025106, "h": 305.04840087890625, "point_id": 109235, "row_index": 21, "w": 59.071563720703125 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 5.859412704537873, "h": 305.0267639160156, "point_id": 109236, "row_index": 22, "w": 58.69070053100586 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 5.480377580047935, "h": 305.00262451171875, "point_id": 109237, "row_index": 23, "w": 58.31241226196289 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 5.103333238842624, "h": 304.9847412109375, "point_id": 109238, "row_index": 24, "w": 57.935787200927734 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 4.726935682447851, "h": 304.9640197753906, "point_id": 109239, "row_index": 25, "w": 57.559959411621094 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 4.353829091975485, "h": 304.9450988769531, "point_id": 109240, "row_index": 26, "w": 57.18733215332031 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 3.984775391409595, "h": 304.9345703125, "point_id": 109241, "row_index": 27, "w": 56.81830978393555 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 3.6075087575747893, "h": 304.91253662109375, "point_id": 109242, "row_index": 28, "w": 56.44168472290039 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 3.2612911546918073, "h": 304.5483703613281, "point_id": 109243, "row_index": 29, "w": 56.09658432006836 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 2.8775904524264337, "h": 304.8908386230469, "point_id": 109244, "row_index": 30, "w": 55.7118034362793 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 2.5148998710940735, "h": 304.8711853027344, "point_id": 109245, "row_index": 31, "w": 55.34963607788086 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 2.1621089685549166, "h": 304.8597717285156, "point_id": 109246, "row_index": 32, "w": 54.996849060058594 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 1.8001805715362036, "h": 304.8399353027344, "point_id": 109247, "row_index": 33, "w": 54.635433197021484 }, { "collection_id": 1623, "direction_sign": 1, "grid_distance_to_anchor": 1.4349775178362092, "h": 304.8215026855469, "point_id": 109248, "row_index": 34, "w": 54.27061462402344 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 1.0958178608446745, "h": 304.7947998046875, "point_id": 109249, "row_index": 35, "w": 53.93250274658203 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 0.7290802062799786, "h": 304.775146484375, "point_id": 109250, "row_index": 36, "w": 53.566192626953125 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 0.3641747971209976, "h": 304.7510986328125, "point_id": 109251, "row_index": 37, "w": 53.20198440551758 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 0.006812312416845255, "h": 304.7218933105469, "point_id": 109252, "row_index": 38, "w": 52.83772659301758 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 0.36638312384840727, "h": 304.68316650390625, "point_id": 109253, "row_index": 39, "w": 52.47460174560547 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 0.7328630353260163, "h": 304.6339111328125, "point_id": 109254, "row_index": 40, "w": 52.111244201660156 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 1.0943492567599817, "h": 304.57366943359375, "point_id": 109255, "row_index": 41, "w": 51.75442886352539 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 1.4729613164483297, "h": 304.5004577636719, "point_id": 109256, "row_index": 42, "w": 51.38236618041992 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 1.8329550649261113, "h": 304.4079895019531, "point_id": 109257, "row_index": 43, "w": 51.03256607055664 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 2.2039944662351783, "h": 304.32403564453125, "point_id": 109258, "row_index": 44, "w": 50.670589447021484 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 2.5832675666104414, "h": 304.2316589355469, "point_id": 109259, "row_index": 45, "w": 50.30198669433594 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 2.947216817981731, "h": 304.10809326171875, "point_id": 109260, "row_index": 46, "w": 49.955589294433594 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 3.2931925502718657, "h": 304.01434326171875, "point_id": 109261, "row_index": 47, "w": 49.621849060058594 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 3.6439275643646445, "h": 303.9340515136719, "point_id": 109262, "row_index": 48, "w": 49.2803840637207 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 4.003509769021081, "h": 303.8797912597656, "point_id": 109263, "row_index": 49, "w": 48.92422103881836 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 4.378094190243056, "h": 303.81072998046875, "point_id": 109264, "row_index": 50, "w": 48.55595016479492 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 4.754957208268249, "h": 303.71826171875, "point_id": 109265, "row_index": 51, "w": 48.19032669067383 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 5.1436091546173515, "h": 303.61395263671875, "point_id": 109266, "row_index": 52, "w": 47.81526184082031 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 5.535782115940755, "h": 303.51165771484375, "point_id": 109267, "row_index": 53, "w": 47.43623352050781 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 5.939121036298541, "h": 303.381103515625, "point_id": 109268, "row_index": 54, "w": 47.0522575378418 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 6.322745227135429, "h": 303.2718505859375, "point_id": 109269, "row_index": 55, "w": 46.68380355834961 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 6.7131019901052476, "h": 303.15435791015625, "point_id": 109270, "row_index": 56, "w": 46.31047439575195 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 7.060784534176796, "h": 303.0994873046875, "point_id": 109271, "row_index": 57, "w": 45.966163635253906 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 7.341953270888985, "h": 303.159423828125, "point_id": 109272, "row_index": 58, "w": 45.66437530517578 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 7.607570223162136, "h": 303.3270263671875, "point_id": 109273, "row_index": 59, "w": 45.35974884033203 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 7.8779607484176, "h": 303.4673156738281, "point_id": 109274, "row_index": 60, "w": 45.061092376708984 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 8.16019198002237, "h": 303.50189208984375, "point_id": 109275, "row_index": 61, "w": 44.770103454589844 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 8.438293999805829, "h": 303.41192626953125, "point_id": 109276, "row_index": 62, "w": 44.50254821777344 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 8.72485497649529, "h": 303.440673828125, "point_id": 109277, "row_index": 63, "w": 44.20832824707031 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 9.050927001985626, "h": 303.41900634765625, "point_id": 109278, "row_index": 64, "w": 43.8819580078125 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 9.439987516606699, "h": 303.3399658203125, "point_id": 109279, "row_index": 65, "w": 43.50031280517578 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 9.864947927442493, "h": 303.35662841796875, "point_id": 109280, "row_index": 66, "w": 43.06863784790039 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 10.260712588928428, "h": 303.2693786621094, "point_id": 109281, "row_index": 67, "w": 42.681251525878906 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 10.572771043597875, "h": 303.2052307128906, "point_id": 109282, "row_index": 68, "w": 42.37519836425781 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 10.912771778069343, "h": 303.2767028808594, "point_id": 109283, "row_index": 69, "w": 42.02204132080078 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 11.33872563596226, "h": 303.23583984375, "point_id": 109284, "row_index": 70, "w": 41.597782135009766 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 11.703013750865987, "h": 303.1974792480469, "point_id": 109285, "row_index": 71, "w": 41.23540496826172 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 12.114545853396335, "h": 303.1492614746094, "point_id": 109286, "row_index": 72, "w": 40.82667541503906 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 12.540722732019404, "h": 303.0762939453125, "point_id": 109287, "row_index": 73, "w": 40.40641784667969 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 13.013376413672281, "h": 303.0192565917969, "point_id": 109288, "row_index": 74, "w": 39.93719482421875 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 13.407262646801739, "h": 302.98699951171875, "point_id": 109289, "row_index": 75, "w": 39.54417419433594 }, { "collection_id": 1623, "direction_sign": -1, "grid_distance_to_anchor": 13.427413083553, "h": 302.9864501953125, "point_id": 109290, "row_index": 76, "w": 39.52392578125 } ], "projected_w_span_grid": 26.715255737304688, "projected_w_span_vx": 1335.7627868652344, "projection_mode": "normal-line", "skipped_point_count": 0, "skipped_points": [], "skipped_reasons": {}, "usable_point_count": 77, "windings": 1 }, "args": { "approval-inpaint": false, "approval-inpaint-corr-spacing": null, "approval-inpaint-output-mask": false, "approval-inpaint-output-mask-dilate": 3, "approval-inpaint-padding-frac": 0.25, "approval-inpaint-tifxyz": null, "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "crop": null, "cuda-gridsample": 1, "depth": 1, "device": "cuda", "downscale": 4.0, "erode-valid-mask": 0, "flatten-solver": "torch", "init-mode": "shell-dir-crop", "input": "/ephemeral/lasag_strip_outputs/.lasagna_point_strip_work/collection_1623/point_strip.lasagna.json", "mesh-h": 32, "mesh-step": 50, "mesh-w": 32, "model-h": 8183.0963134765625, "model-init": "seed", "model-input": null, "model-output": "/tmp/fit_reopt_rshvkv_l/model_reopt.pt", "model-w": 9335.762786865234, "model-w-unit": "voxels", "normal-mask-zero": 0, "out-dir": null, "progress": true, "pyramid-d": false, "seed": [ 25163.68359375, 15418.48828125, 52891.5859375 ], "snapshot-interval": 1000, "sparse-prefetch-backend": "tensorstore", "subsample-mesh": 4, "subsample-winding": 4, "tifxyz-flow-gate-channels": true, "tifxyz-init": null, "winding-step": 25, "winding-volume": null, "windings": 1, "z-center": 0.0 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "1623": { "color": [ 0.47058823704719543, 0.7058823704719543, 1.0 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap2449", "points": { "109214": { "creation_time": 1779668528932, "p": [ 26982.671875, 17510.794921875, 52891.5859375 ], "wind_a": 0.0 }, "109215": { "creation_time": 1779668528932, "p": [ 26978.103515625, 17432.6875, 52891.5859375 ], "wind_a": 0.0 }, "109216": { "creation_time": 1779668528932, "p": [ 26959.830078125, 17360.255859375, 52891.5859375 ], "wind_a": 0.0 }, "109217": { "creation_time": 1779668528932, "p": [ 26945.41015625, 17286.23046875, 52891.5859375 ], "wind_a": 0.0 }, "109218": { "creation_time": 1779668528932, "p": [ 26914.68359375, 17218.95703125, 52891.5859375 ], "wind_a": 0.0 }, "109219": { "creation_time": 1779668528932, "p": [ 26877.49609375, 17154.359375, 52891.5859375 ], "wind_a": 0.0 }, "109220": { "creation_time": 1779668528932, "p": [ 26831.916015625, 17093.240234375, 52891.5859375 ], "wind_a": 0.0 }, "109221": { "creation_time": 1779668528932, "p": [ 26786.97265625, 17031.857421875, 52891.5859375 ], "wind_a": 0.0 }, "109222": { "creation_time": 1779668528932, "p": [ 26735.525390625, 16975.841796875, 52891.5859375 ], "wind_a": 0.0 }, "109223": { "creation_time": 1779668528932, "p": [ 26677.619140625, 16922.50390625, 52891.5859375 ], "wind_a": 0.0 }, "109224": { "creation_time": 1779668528932, "p": [ 26627.51171875, 16863.259765625, 52891.5859375 ], "wind_a": 0.0 }, "109225": { "creation_time": 1779668528932, "p": [ 26585.224609375, 16800.775390625, 52891.5859375 ], "wind_a": 0.0 }, "109226": { "creation_time": 1779668528932, "p": [ 26540.216796875, 16739.41796875, 52891.5859375 ], "wind_a": 0.0 }, "109227": { "creation_time": 1779668528932, "p": [ 26496.5703125, 16677.498046875, 52891.5859375 ], "wind_a": 0.0 }, "109228": { "creation_time": 1779668528932, "p": [ 26456.15234375, 16614.23828125, 52891.5859375 ], "wind_a": 0.0 }, "109229": { "creation_time": 1779668528932, "p": [ 26425.33203125, 16547.00390625, 52891.5859375 ], "wind_a": 0.0 }, "109230": { "creation_time": 1779668528932, "p": [ 26402.4921875, 16476.46484375, 52891.5859375 ], "wind_a": 0.0 }, "109231": { "creation_time": 1779668528932, "p": [ 26380.125, 16405.73046875, 52891.5859375 ], "wind_a": 0.0 }, "109232": { "creation_time": 1779668528932, "p": [ 26352.62890625, 16337.119140625, 52891.5859375 ], "wind_a": 0.0 }, "109233": { "creation_time": 1779668528932, "p": [ 26321.904296875, 16269.845703125, 52891.5859375 ], "wind_a": 0.0 }, "109234": { "creation_time": 1779668528932, "p": [ 26265.3359375, 16213.27734375, 52891.5859375 ], "wind_a": 0.0 }, "109235": { "creation_time": 1779668528932, "p": [ 26206.107421875, 16163.130859375, 52891.5859375 ], "wind_a": 0.0 }, "109236": { "creation_time": 1779668528932, "p": [ 26148.18359375, 16109.83203125, 52891.5859375 ], "wind_a": 0.0 }, "109237": { "creation_time": 1779668528932, "p": [ 26088.939453125, 16059.7236328125, 52891.5859375 ], "wind_a": 0.0 }, "109238": { "creation_time": 1779668528932, "p": [ 26030.4453125, 16007.806640625, 52891.5859375 ], "wind_a": 0.0 }, "109239": { "creation_time": 1779668528932, "p": [ 25971.7890625, 15956.27734375, 52891.5859375 ], "wind_a": 0.0 }, "109240": { "creation_time": 1779668528932, "p": [ 25912.54296875, 15906.169921875, 52891.5859375 ], "wind_a": 0.0 }, "109241": { "creation_time": 1779668528932, "p": [ 25851.9609375, 15859.291015625, 52891.5859375 ], "wind_a": 0.0 }, "109242": { "creation_time": 1779668528932, "p": [ 25792.716796875, 15809.18359375, 52891.5859375 ], "wind_a": 0.0 }, "109243": { "creation_time": 1779668528932, "p": [ 25732.1328125, 15762.306640625, 52891.5859375 ], "wind_a": 0.0 }, "109244": { "creation_time": 1779668528932, "p": [ 25668.875, 15721.8896484375, 52891.5859375 ], "wind_a": 0.0 }, "109245": { "creation_time": 1779668528932, "p": [ 25604.27734375, 15684.703125, 52891.5859375 ], "wind_a": 0.0 }, "109246": { "creation_time": 1779668528932, "p": [ 25552.83203125, 15628.6884765625, 52891.5859375 ], "wind_a": 0.0 }, "109247": { "creation_time": 1779668528932, "p": [ 25484.22265625, 15601.1923828125, 52891.5859375 ], "wind_a": 0.0 }, "109248": { "creation_time": 1779668528932, "p": [ 25420.962890625, 15560.775390625, 52891.5859375 ], "wind_a": 0.0 }, "109249": { "creation_time": 1779668528932, "p": [ 25356.37890625, 15532.697265625, 52891.5859375 ], "wind_a": 0.0 }, "109250": { "creation_time": 1779668528932, "p": [ 25293.107421875, 15492.30859375, 52891.5859375 ], "wind_a": 0.0 }, "109251": { "creation_time": 1779668528932, "p": [ 25228.546875, 15455.03515625, 52891.5859375 ], "wind_a": 0.0 }, "109252": { "creation_time": 1779668528932, "p": [ 25163.68359375, 15418.48828125, 52891.5859375 ], "wind_a": 0.0 }, "109253": { "creation_time": 1779668528932, "p": [ 25096.9296875, 15386.509765625, 52891.5859375 ], "wind_a": 0.0 }, "109254": { "creation_time": 1779668528932, "p": [ 25030.17578125, 15354.53125, 52891.5859375 ], "wind_a": 0.0 }, "109255": { "creation_time": 1779668528932, "p": [ 24962.09375, 15325.7578125, 52891.5859375 ], "wind_a": 0.0 }, "109256": { "creation_time": 1779668528932, "p": [ 24894.77734375, 15295.142578125, 52891.5859375 ], "wind_a": 0.0 }, "109257": { "creation_time": 1779668528932, "p": [ 24824.873046875, 15270.765625, 52891.5859375 ], "wind_a": 0.0 }, "109258": { "creation_time": 1779668528932, "p": [ 24756.26171875, 15243.26953125, 52891.5859375 ], "wind_a": 0.0 }, "109259": { "creation_time": 1779668528932, "p": [ 24686.9453125, 15217.48046875, 52891.5859375 ], "wind_a": 0.0 }, "109260": { "creation_time": 1779668528932, "p": [ 24614.513671875, 15199.20703125, 52891.5859375 ], "wind_a": 0.0 }, "109261": { "creation_time": 1779668528932, "p": [ 24545.8671875, 15171.796875, 52891.5859375 ], "wind_a": 0.0 }, "109262": { "creation_time": 1779668528932, "p": [ 24477.220703125, 15144.3876953125, 52891.5859375 ], "wind_a": 0.0 }, "109263": { "creation_time": 1779668528932, "p": [ 24409.193359375, 15115.482421875, 52891.5859375 ], "wind_a": 0.0 }, "109264": { "creation_time": 1779668528932, "p": [ 24341.8203125, 15084.9990234375, 52891.5859375 ], "wind_a": 0.0 }, "109265": { "creation_time": 1779668528932, "p": [ 24271.97265625, 15060.4912109375, 52891.5859375 ], "wind_a": 0.0 }, "109266": { "creation_time": 1779668528932, "p": [ 24200.7421875, 15039.3154296875, 52891.5859375 ], "wind_a": 0.0 }, "109267": { "creation_time": 1779668528932, "p": [ 24128.3125, 15021.0419921875, 52891.5859375 ], "wind_a": 0.0 }, "109268": { "creation_time": 1779668528932, "p": [ 24052.09765625, 15011.9052734375, 52891.5859375 ], "wind_a": 0.0 }, "109269": { "creation_time": 1779668528932, "p": [ 23975.880859375, 15002.7685546875, 52891.5859375 ], "wind_a": 0.0 }, "109270": { "creation_time": 1779668528932, "p": [ 23897.7734375, 14998.2001953125, 52891.5859375 ], "wind_a": 0.0 }, "109271": { "creation_time": 1779668528932, "p": [ 23821.55859375, 14989.0634765625, 52891.5859375 ], "wind_a": 0.0 }, "109272": { "creation_time": 1779668528932, "p": [ 23749.126953125, 14970.7900390625, 52891.5859375 ], "wind_a": 0.0 }, "109273": { "creation_time": 1779668528932, "p": [ 23680.48046875, 14943.3798828125, 52891.5859375 ], "wind_a": 0.0 }, "109274": { "creation_time": 1779668528932, "p": [ 23612.994140625, 14913.169921875, 52891.5859375 ], "wind_a": 0.0 }, "109275": { "creation_time": 1779668528932, "p": [ 23547.05859375, 14879.212890625, 52891.5859375 ], "wind_a": 0.0 }, "109276": { "creation_time": 1779668528932, "p": [ 23484.00390625, 14838.3076171875, 52891.5859375 ], "wind_a": 0.0 }, "109277": { "creation_time": 1779668528932, "p": [ 23422.92578125, 14792.6240234375, 52891.5859375 ], "wind_a": 0.0 }, "109278": { "creation_time": 1779668528932, "p": [ 23376.89453125, 14745.5947265625, 52891.5859375 ], "wind_a": 0.0 }, "109279": { "creation_time": 1779668528932, "p": [ 23318.98828125, 14692.2568359375, 52891.5859375 ], "wind_a": 0.0 }, "109280": { "creation_time": 1779668528932, "p": [ 23259.744140625, 14642.1484375, 52891.5859375 ], "wind_a": 0.0 }, "109281": { "creation_time": 1779668528932, "p": [ 23200.5, 14592.041015625, 52891.5859375 ], "wind_a": 0.0 }, "109282": { "creation_time": 1779668528932, "p": [ 23141.25390625, 14541.93359375, 52891.5859375 ], "wind_a": 0.0 }, "109283": { "creation_time": 1779668528932, "p": [ 23083.34765625, 14488.5947265625, 52891.5859375 ], "wind_a": 0.0 }, "109284": { "creation_time": 1779668528932, "p": [ 23026.779296875, 14432.0263671875, 52891.5859375 ], "wind_a": 0.0 }, "109285": { "creation_time": 1779668528932, "p": [ 22968.873046875, 14378.6875, 52891.5859375 ], "wind_a": 0.0 }, "109286": { "creation_time": 1779668528932, "p": [ 22912.3046875, 14322.119140625, 52891.5859375 ], "wind_a": 0.0 }, "109287": { "creation_time": 1779668528932, "p": [ 22854.3984375, 14268.78125, 52891.5859375 ], "wind_a": 0.0 }, "109288": { "creation_time": 1779668528932, "p": [ 22792.4765625, 14225.1337890625, 52891.5859375 ], "wind_a": 0.0 }, "109289": { "creation_time": 1779668528932, "p": [ 22727.87890625, 14187.947265625, 52891.5859375 ], "wind_a": 0.0 }, "109290": { "creation_time": 1779668528932, "p": [ 22724.96484375, 14185.033203125, 52891.5859375 ], "wind_a": 0.0 } } } } }, "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ], "vc3d_volume_shape_zyx": [ 18946, 8174, 8174 ] }, "format": "tifxyz", "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "lasagna_job": { "config": { "args": { "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "init-mode": "shell-dir-crop", "mesh-step": 50.0, "model-h": 5000.0, "model-init": "seed", "model-w": 5000.0, "model-w-unit": "voxels", "seed": [ 6290.9208984375, 3854.6220703125, 13222.896484375 ], "tifxyz-flow-gate-channels": true, "windings": 1 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "1623": { "color": [ 0.47058823704719543, 0.7058823704719543, 1.0 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap2449", "points": { "109214": { "creation_time": 1779668528932, "p": [ 6745.66796875, 4377.69873046875, 13222.896484375 ], "wind_a": 0.0 }, "109215": { "creation_time": 1779668528932, "p": [ 6744.52587890625, 4358.171875, 13222.896484375 ], "wind_a": 0.0 }, "109216": { "creation_time": 1779668528932, "p": [ 6739.95751953125, 4340.06396484375, 13222.896484375 ], "wind_a": 0.0 }, "109217": { "creation_time": 1779668528932, "p": [ 6736.3525390625, 4321.5576171875, 13222.896484375 ], "wind_a": 0.0 }, "109218": { "creation_time": 1779668528932, "p": [ 6728.6708984375, 4304.7392578125, 13222.896484375 ], "wind_a": 0.0 }, "109219": { "creation_time": 1779668528932, "p": [ 6719.3740234375, 4288.58984375, 13222.896484375 ], "wind_a": 0.0 }, "109220": { "creation_time": 1779668528932, "p": [ 6707.97900390625, 4273.31005859375, 13222.896484375 ], "wind_a": 0.0 }, "109221": { "creation_time": 1779668528932, "p": [ 6696.7431640625, 4257.96435546875, 13222.896484375 ], "wind_a": 0.0 }, "109222": { "creation_time": 1779668528932, "p": [ 6683.88134765625, 4243.96044921875, 13222.896484375 ], "wind_a": 0.0 }, "109223": { "creation_time": 1779668528932, "p": [ 6669.40478515625, 4230.6259765625, 13222.896484375 ], "wind_a": 0.0 }, "109224": { "creation_time": 1779668528932, "p": [ 6656.8779296875, 4215.81494140625, 13222.896484375 ], "wind_a": 0.0 }, "109225": { "creation_time": 1779668528932, "p": [ 6646.30615234375, 4200.19384765625, 13222.896484375 ], "wind_a": 0.0 }, "109226": { "creation_time": 1779668528932, "p": [ 6635.05419921875, 4184.8544921875, 13222.896484375 ], "wind_a": 0.0 }, "109227": { "creation_time": 1779668528932, "p": [ 6624.142578125, 4169.37451171875, 13222.896484375 ], "wind_a": 0.0 }, "109228": { "creation_time": 1779668528932, "p": [ 6614.0380859375, 4153.5595703125, 13222.896484375 ], "wind_a": 0.0 }, "109229": { "creation_time": 1779668528932, "p": [ 6606.3330078125, 4136.7509765625, 13222.896484375 ], "wind_a": 0.0 }, "109230": { "creation_time": 1779668528932, "p": [ 6600.623046875, 4119.1162109375, 13222.896484375 ], "wind_a": 0.0 }, "109231": { "creation_time": 1779668528932, "p": [ 6595.03125, 4101.4326171875, 13222.896484375 ], "wind_a": 0.0 }, "109232": { "creation_time": 1779668528932, "p": [ 6588.1572265625, 4084.27978515625, 13222.896484375 ], "wind_a": 0.0 }, "109233": { "creation_time": 1779668528932, "p": [ 6580.47607421875, 4067.46142578125, 13222.896484375 ], "wind_a": 0.0 }, "109234": { "creation_time": 1779668528932, "p": [ 6566.333984375, 4053.3193359375, 13222.896484375 ], "wind_a": 0.0 }, "109235": { "creation_time": 1779668528932, "p": [ 6551.52685546875, 4040.78271484375, 13222.896484375 ], "wind_a": 0.0 }, "109236": { "creation_time": 1779668528932, "p": [ 6537.0458984375, 4027.4580078125, 13222.896484375 ], "wind_a": 0.0 }, "109237": { "creation_time": 1779668528932, "p": [ 6522.23486328125, 4014.930908203125, 13222.896484375 ], "wind_a": 0.0 }, "109238": { "creation_time": 1779668528932, "p": [ 6507.611328125, 4001.95166015625, 13222.896484375 ], "wind_a": 0.0 }, "109239": { "creation_time": 1779668528932, "p": [ 6492.947265625, 3989.0693359375, 13222.896484375 ], "wind_a": 0.0 }, "109240": { "creation_time": 1779668528932, "p": [ 6478.1357421875, 3976.54248046875, 13222.896484375 ], "wind_a": 0.0 }, "109241": { "creation_time": 1779668528932, "p": [ 6462.990234375, 3964.82275390625, 13222.896484375 ], "wind_a": 0.0 }, "109242": { "creation_time": 1779668528932, "p": [ 6448.17919921875, 3952.2958984375, 13222.896484375 ], "wind_a": 0.0 }, "109243": { "creation_time": 1779668528932, "p": [ 6433.033203125, 3940.57666015625, 13222.896484375 ], "wind_a": 0.0 }, "109244": { "creation_time": 1779668528932, "p": [ 6417.21875, 3930.472412109375, 13222.896484375 ], "wind_a": 0.0 }, "109245": { "creation_time": 1779668528932, "p": [ 6401.0693359375, 3921.17578125, 13222.896484375 ], "wind_a": 0.0 }, "109246": { "creation_time": 1779668528932, "p": [ 6388.2080078125, 3907.172119140625, 13222.896484375 ], "wind_a": 0.0 }, "109247": { "creation_time": 1779668528932, "p": [ 6371.0556640625, 3900.298095703125, 13222.896484375 ], "wind_a": 0.0 }, "109248": { "creation_time": 1779668528932, "p": [ 6355.24072265625, 3890.19384765625, 13222.896484375 ], "wind_a": 0.0 }, "109249": { "creation_time": 1779668528932, "p": [ 6339.0947265625, 3883.17431640625, 13222.896484375 ], "wind_a": 0.0 }, "109250": { "creation_time": 1779668528932, "p": [ 6323.27685546875, 3873.0771484375, 13222.896484375 ], "wind_a": 0.0 }, "109251": { "creation_time": 1779668528932, "p": [ 6307.13671875, 3863.7587890625, 13222.896484375 ], "wind_a": 0.0 }, "109252": { "creation_time": 1779668528932, "p": [ 6290.9208984375, 3854.6220703125, 13222.896484375 ], "wind_a": 0.0 }, "109253": { "creation_time": 1779668528932, "p": [ 6274.232421875, 3846.62744140625, 13222.896484375 ], "wind_a": 0.0 }, "109254": { "creation_time": 1779668528932, "p": [ 6257.5439453125, 3838.6328125, 13222.896484375 ], "wind_a": 0.0 }, "109255": { "creation_time": 1779668528932, "p": [ 6240.5234375, 3831.439453125, 13222.896484375 ], "wind_a": 0.0 }, "109256": { "creation_time": 1779668528932, "p": [ 6223.6943359375, 3823.78564453125, 13222.896484375 ], "wind_a": 0.0 }, "109257": { "creation_time": 1779668528932, "p": [ 6206.21826171875, 3817.69140625, 13222.896484375 ], "wind_a": 0.0 }, "109258": { "creation_time": 1779668528932, "p": [ 6189.0654296875, 3810.8173828125, 13222.896484375 ], "wind_a": 0.0 }, "109259": { "creation_time": 1779668528932, "p": [ 6171.736328125, 3804.3701171875, 13222.896484375 ], "wind_a": 0.0 }, "109260": { "creation_time": 1779668528932, "p": [ 6153.62841796875, 3799.8017578125, 13222.896484375 ], "wind_a": 0.0 }, "109261": { "creation_time": 1779668528932, "p": [ 6136.466796875, 3792.94921875, 13222.896484375 ], "wind_a": 0.0 }, "109262": { "creation_time": 1779668528932, "p": [ 6119.30517578125, 3786.096923828125, 13222.896484375 ], "wind_a": 0.0 }, "109263": { "creation_time": 1779668528932, "p": [ 6102.29833984375, 3778.87060546875, 13222.896484375 ], "wind_a": 0.0 }, "109264": { "creation_time": 1779668528932, "p": [ 6085.455078125, 3771.249755859375, 13222.896484375 ], "wind_a": 0.0 }, "109265": { "creation_time": 1779668528932, "p": [ 6067.9931640625, 3765.122802734375, 13222.896484375 ], "wind_a": 0.0 }, "109266": { "creation_time": 1779668528932, "p": [ 6050.185546875, 3759.828857421875, 13222.896484375 ], "wind_a": 0.0 }, "109267": { "creation_time": 1779668528932, "p": [ 6032.078125, 3755.260498046875, 13222.896484375 ], "wind_a": 0.0 }, "109268": { "creation_time": 1779668528932, "p": [ 6013.0244140625, 3752.976318359375, 13222.896484375 ], "wind_a": 0.0 }, "109269": { "creation_time": 1779668528932, "p": [ 5993.97021484375, 3750.692138671875, 13222.896484375 ], "wind_a": 0.0 }, "109270": { "creation_time": 1779668528932, "p": [ 5974.443359375, 3749.550048828125, 13222.896484375 ], "wind_a": 0.0 }, "109271": { "creation_time": 1779668528932, "p": [ 5955.3896484375, 3747.265869140625, 13222.896484375 ], "wind_a": 0.0 }, "109272": { "creation_time": 1779668528932, "p": [ 5937.28173828125, 3742.697509765625, 13222.896484375 ], "wind_a": 0.0 }, "109273": { "creation_time": 1779668528932, "p": [ 5920.1201171875, 3735.844970703125, 13222.896484375 ], "wind_a": 0.0 }, "109274": { "creation_time": 1779668528932, "p": [ 5903.24853515625, 3728.29248046875, 13222.896484375 ], "wind_a": 0.0 }, "109275": { "creation_time": 1779668528932, "p": [ 5886.7646484375, 3719.80322265625, 13222.896484375 ], "wind_a": 0.0 }, "109276": { "creation_time": 1779668528932, "p": [ 5871.0009765625, 3709.576904296875, 13222.896484375 ], "wind_a": 0.0 }, "109277": { "creation_time": 1779668528932, "p": [ 5855.7314453125, 3698.156005859375, 13222.896484375 ], "wind_a": 0.0 }, "109278": { "creation_time": 1779668528932, "p": [ 5844.2236328125, 3686.398681640625, 13222.896484375 ], "wind_a": 0.0 }, "109279": { "creation_time": 1779668528932, "p": [ 5829.7470703125, 3673.064208984375, 13222.896484375 ], "wind_a": 0.0 }, "109280": { "creation_time": 1779668528932, "p": [ 5814.93603515625, 3660.537109375, 13222.896484375 ], "wind_a": 0.0 }, "109281": { "creation_time": 1779668528932, "p": [ 5800.125, 3648.01025390625, 13222.896484375 ], "wind_a": 0.0 }, "109282": { "creation_time": 1779668528932, "p": [ 5785.3134765625, 3635.4833984375, 13222.896484375 ], "wind_a": 0.0 }, "109283": { "creation_time": 1779668528932, "p": [ 5770.8369140625, 3622.148681640625, 13222.896484375 ], "wind_a": 0.0 }, "109284": { "creation_time": 1779668528932, "p": [ 5756.69482421875, 3608.006591796875, 13222.896484375 ], "wind_a": 0.0 }, "109285": { "creation_time": 1779668528932, "p": [ 5742.21826171875, 3594.671875, 13222.896484375 ], "wind_a": 0.0 }, "109286": { "creation_time": 1779668528932, "p": [ 5728.076171875, 3580.52978515625, 13222.896484375 ], "wind_a": 0.0 }, "109287": { "creation_time": 1779668528932, "p": [ 5713.599609375, 3567.1953125, 13222.896484375 ], "wind_a": 0.0 }, "109288": { "creation_time": 1779668528932, "p": [ 5698.119140625, 3556.283447265625, 13222.896484375 ], "wind_a": 0.0 }, "109289": { "creation_time": 1779668528932, "p": [ 5681.9697265625, 3546.98681640625, 13222.896484375 ], "wind_a": 0.0 }, "109290": { "creation_time": 1779668528932, "p": [ 5681.2412109375, 3546.25830078125, 13222.896484375 ], "wind_a": 0.0 } } } } }, "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ] }, "linked_surfaces": [], "model": null, "volume_shape_zyx": [ 18946, 8174, 8174 ] }, "model_source": "/tmp/fit_reopt_rshvkv_l/model_reopt.pt", "scale": [ 0.07999999821186066, 0.07999999821186066 ], "tags": { "date_last_modified": "20260614185644533", "reviewed": { "date": "20260604080934272" } }, "type": "seg", "uuid": "same_wrap002449_lasagna" }