{ "area_vx2": 1141250.0, "base_shape_zyx": [ 18946, 8174, 8174 ], "bbox": [ [ 5125.6279296875, 3841.247802734375, 10595.5771484375 ], [ 6371.7177734375, 4887.33642578125, 11189.7587890625 ] ], "extra_channels": [ { "dtype": "float32", "file": "flow_gate_local_contrast.tif", "name": "flow_gate_local_contrast", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.local_contrast", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } }, { "dtype": "float32", "file": "flow_gate_component_normalized.tif", "name": "flow_gate_component_normalized", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.component_normalized", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } } ], "fit_config": { "_corr_point_roi_init_": { "effective_seed": [ 23696.966796875, 18616.78125, 43562.51171875 ], "final_anchor_h": 257.6120260357857, "final_anchor_w": 62.5303099155426, "final_shell_id": "shell_0001.tifxyz", "final_trim_bottom": 36, "final_trim_top": 4, "init_margin_grid_points": 80, "initial_seed": [ 24188.90234375, 18355.890625, 43562.51171875 ], "initial_shell_id": "shell_0002.tifxyz", "initial_skipped_point_count": 0, "initial_skipped_reasons": {}, "initial_trim_bottom": 33, "initial_trim_top": 0, "initial_usable_point_count": 59, "mode": "corr-point-roi", "model_h": 9297.457885742188, "model_w": 13927.462196350098, "model_w_unit": "voxels", "output_radius_grid_points": 20, "parsed_point_count": 59, "projected_h_span_grid": 25.94915771484375, "projected_h_span_vx": 1297.4578857421875, "projected_points": [ { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 11.622711888893894, "h": 257.9509582519531, "point_id": 109784, "row_index": 0, "w": 74.14807891845703 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 10.983952103283777, "h": 257.9789123535156, "point_id": 109785, "row_index": 1, "w": 73.50813293457031 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 10.443162226280357, "h": 257.95489501953125, "point_id": 109786, "row_index": 2, "w": 72.96784210205078 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 9.896561819485731, "h": 257.71624755859375, "point_id": 109787, "row_index": 3, "w": 72.42632293701172 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 9.347908580915544, "h": 257.65484619140625, "point_id": 109788, "row_index": 4, "w": 71.87812042236328 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 8.890314651331531, "h": 257.7008056640625, "point_id": 109789, "row_index": 5, "w": 71.42018127441406 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 8.081515380792055, "h": 257.73968505859375, "point_id": 109790, "row_index": 6, "w": 70.6108169555664 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 7.328001959772079, "h": 257.6676330566406, "point_id": 109791, "row_index": 7, "w": 69.85810089111328 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 6.757102851201766, "h": 257.64208984375, "point_id": 109792, "row_index": 8, "w": 69.28734588623047 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 6.215783211006443, "h": 257.6815185546875, "point_id": 109793, "row_index": 9, "w": 68.7457046508789 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 5.679242180313592, "h": 257.6060485839844, "point_id": 109794, "row_index": 10, "w": 68.20954895019531 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 5.15451689836037, "h": 257.5598449707031, "point_id": 109795, "row_index": 11, "w": 67.68456268310547 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 4.66756721929699, "h": 257.5697021484375, "point_id": 109796, "row_index": 12, "w": 67.19768524169922 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 4.105568715591068, "h": 257.62762451171875, "point_id": 109797, "row_index": 13, "w": 66.63584899902344 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 3.490621487012331, "h": 257.6510009765625, "point_id": 109798, "row_index": 14, "w": 66.02071380615234 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 2.929536190878582, "h": 257.6788635253906, "point_id": 109799, "row_index": 15, "w": 65.4590835571289 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 2.3506680664525157, "h": 257.73480224609375, "point_id": 109800, "row_index": 16, "w": 64.87776947021484 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 1.747315290402818, "h": 257.8052673339844, "point_id": 109801, "row_index": 17, "w": 64.26690673828125 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 1.1591970426990894, "h": 257.7939147949219, "point_id": 109802, "row_index": 18, "w": 63.675148010253906 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 0.5769297229948064, "h": 257.71014404296875, "point_id": 109803, "row_index": 19, "w": 63.09883499145508 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 0.012667355817012643, "h": 257.6197814941406, "point_id": 109804, "row_index": 20, "w": 62.520294189453125 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 0.5912536963240356, "h": 257.5316162109375, "point_id": 109805, "row_index": 21, "w": 61.944549560546875 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 1.1928245466611018, "h": 257.4434814453125, "point_id": 109806, "row_index": 22, "w": 61.34945297241211 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 1.8055067137100784, "h": 257.3750305175781, "point_id": 109807, "row_index": 23, "w": 60.74042510986328 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 2.367580756399542, "h": 257.328369140625, "point_id": 109808, "row_index": 24, "w": 60.17978286743164 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 2.9328274867015547, "h": 257.2546081542969, "point_id": 109809, "row_index": 25, "w": 59.61934280395508 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 3.4327776069737395, "h": 257.14434814453125, "point_id": 109810, "row_index": 26, "w": 59.129539489746094 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 3.9051187409325276, "h": 256.99237060546875, "point_id": 109811, "row_index": 27, "w": 58.67466735839844 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 4.451187396111627, "h": 256.82586669921875, "point_id": 109812, "row_index": 28, "w": 58.14909744262695 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 5.09616115164983, "h": 256.7066955566406, "point_id": 109813, "row_index": 29, "w": 57.51520919799805 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 5.691035350127268, "h": 256.5960998535156, "point_id": 109814, "row_index": 30, "w": 56.930686950683594 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 6.297803035151449, "h": 256.47845458984375, "point_id": 109815, "row_index": 31, "w": 56.335365295410156 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 6.864386654241015, "h": 256.3168640136719, "point_id": 109816, "row_index": 32, "w": 55.789215087890625 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 7.402952390437022, "h": 256.14056396484375, "point_id": 109817, "row_index": 33, "w": 55.27507019042969 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 7.983150706468625, "h": 255.8922576904297, "point_id": 109818, "row_index": 34, "w": 54.73460006713867 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 8.571288847141473, "h": 255.76416015625, "point_id": 109819, "row_index": 35, "w": 54.160579681396484 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 9.4052884771836, "h": 255.4517364501953, "point_id": 109820, "row_index": 36, "w": 53.37648010253906 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 39.721573099510636, "h": 247.51620483398438, "point_id": 109821, "row_index": 37, "w": 24.113155364990234 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 80.98611325090815, "h": 245.88177490234375, "point_id": 109822, "row_index": 38, "w": 142.6623992919922 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 29.156230041268145, "h": 248.5643310546875, "point_id": 109823, "row_index": 39, "w": 34.813438415527344 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 12.61260554707131, "h": 253.75863647460938, "point_id": 109824, "row_index": 40, "w": 50.5207633972168 }, { "collection_id": 2640, "direction_sign": -1, "grid_distance_to_anchor": 13.585039680208398, "h": 253.9994354248047, "point_id": 109825, "row_index": 41, "w": 49.43441390991211 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 6.134468739238274, "h": 263.18035888671875, "point_id": 109826, "row_index": 42, "w": 59.956329345703125 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 8.582096600560897, "h": 256.5749206542969, "point_id": 109829, "row_index": 45, "w": 54.0111083984375 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 7.306884992559552, "h": 257.4301452636719, "point_id": 109830, "row_index": 46, "w": 55.22568893432617 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 6.172435300131597, "h": 258.2955017089844, "point_id": 109831, "row_index": 47, "w": 56.39583206176758 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 4.354726051941107, "h": 261.193115234375, "point_id": 109832, "row_index": 48, "w": 60.052520751953125 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 6.205064130385713, "h": 263.794921875, "point_id": 109833, "row_index": 49, "w": 63.054351806640625 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 7.312833193438916, "h": 264.868408203125, "point_id": 109834, "row_index": 50, "w": 63.437198638916016 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 6.675468451957467, "h": 260.78912353515625, "point_id": 109835, "row_index": 51, "w": 56.65937042236328 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 7.036930626393702, "h": 260.8987731933594, "point_id": 109836, "row_index": 52, "w": 56.3081169128418 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 11.8627280064806, "h": 269.1209411621094, "point_id": 109837, "row_index": 53, "w": 65.40592956542969 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 13.248439798746288, "h": 270.2628173828125, "point_id": 109838, "row_index": 54, "w": 66.464599609375 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 6.620666486149301, "h": 253.56173706054688, "point_id": 109839, "row_index": 55, "w": 57.29309844970703 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 6.777711468034315, "h": 253.00820922851563, "point_id": 109840, "row_index": 56, "w": 57.55615234375 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 4.687631566913741, "h": 262.0672912597656, "point_id": 109841, "row_index": 57, "w": 63.987876892089844 }, { "collection_id": 2640, "direction_sign": 1, "grid_distance_to_anchor": 15.61197737235696, "h": 271.8309326171875, "point_id": 109842, "row_index": 58, "w": 68.97674560546875 } ], "projected_w_span_grid": 118.54924392700195, "projected_w_span_vx": 5927.462196350098, "projection_mode": "normal-line", "skipped_point_count": 2, "skipped_points": [ { "collection_id": 2640, "point_id": 109827, "reason": "no_line_shell_intersection", "row_index": 43 }, { "collection_id": 2640, "point_id": 109828, "reason": "no_line_shell_intersection", "row_index": 44 } ], "skipped_reasons": { "no_line_shell_intersection": 2 }, "usable_point_count": 57, "windings": 1 }, "args": { "approval-inpaint": false, "approval-inpaint-corr-spacing": null, "approval-inpaint-output-mask": false, "approval-inpaint-output-mask-dilate": 3, "approval-inpaint-padding-frac": 0.25, "approval-inpaint-tifxyz": null, "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "crop": null, "cuda-gridsample": 1, "depth": 1, "device": "cuda", "downscale": 4.0, "erode-valid-mask": 0, "flatten-solver": "torch", "init-mode": "shell-dir-crop", "input": "/ephemeral/lasag_strip_outputs/.lasagna_point_strip_work/collection_2640/point_strip.lasagna.json", "mesh-h": 32, "mesh-step": 50, "mesh-w": 32, "model-h": 9297.457885742188, "model-init": "seed", "model-input": null, "model-output": "/tmp/fit_reopt_5ap61w6o/model_reopt.pt", "model-w": 13927.462196350098, "model-w-unit": "voxels", "normal-mask-zero": 0, "out-dir": null, "progress": true, "pyramid-d": false, "seed": [ 23696.966796875, 18616.78125, 43562.51171875 ], "snapshot-interval": 1000, "sparse-prefetch-backend": "tensorstore", "subsample-mesh": 4, "subsample-winding": 4, "tifxyz-flow-gate-channels": true, "tifxyz-init": null, "winding-step": 25, "winding-volume": null, "windings": 1, "z-center": 0.0 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "2640": { "color": [ 1.0, 0.1568627506494522, 0.1568627506494522 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap2458", "points": { "109784": { "creation_time": 1779684602510, "p": [ 21586.810546875, 19305.419921875, 43562.51171875 ], "wind_a": 0.0 }, "109785": { "creation_time": 1779684602510, "p": [ 21695.310546875, 19277.65625, 43562.51171875 ], "wind_a": 0.0 }, "109786": { "creation_time": 1779684602510, "p": [ 21801.509765625, 19244.33984375, 43562.51171875 ], "wind_a": 0.0 }, "109787": { "creation_time": 1779684602510, "p": [ 21910.009765625, 19216.57421875, 43562.51171875 ], "wind_a": 0.0 }, "109788": { "creation_time": 1779684602510, "p": [ 22020.80859375, 19194.36328125, 43562.51171875 ], "wind_a": 0.0 }, "109789": { "creation_time": 1779684602510, "p": [ 22134.6796875, 19186.953125, 43562.51171875 ], "wind_a": 0.0 }, "109790": { "creation_time": 1779684602510, "p": [ 22248.806640625, 19176.4921875, 43562.51171875 ], "wind_a": 0.0 }, "109791": { "creation_time": 1779684602510, "p": [ 22345.044921875, 19119.125, 43562.51171875 ], "wind_a": 0.0 }, "109792": { "creation_time": 1779684602510, "p": [ 22436.408203125, 19049.9921875, 43562.51171875 ], "wind_a": 0.0 }, "109793": { "creation_time": 1779684602510, "p": [ 22539.14453125, 19008.31640625, 43562.51171875 ], "wind_a": 0.0 }, "109794": { "creation_time": 1779684602510, "p": [ 22637.30859375, 18955.59375, 43562.51171875 ], "wind_a": 0.0 }, "109795": { "creation_time": 1779684602510, "p": [ 22739.75390625, 18913.2109375, 43562.51171875 ], "wind_a": 0.0 }, "109796": { "creation_time": 1779684602510, "p": [ 22845.748046875, 18879.40234375, 43562.51171875 ], "wind_a": 0.0 }, "109797": { "creation_time": 1779684602510, "p": [ 22958.20703125, 18861.1953125, 43562.51171875 ], "wind_a": 0.0 }, "109798": { "creation_time": 1779684602510, "p": [ 23067.498046875, 18835.341796875, 43562.51171875 ], "wind_a": 0.0 }, "109799": { "creation_time": 1779684602510, "p": [ 23175.20703125, 18805.66796875, 43562.51171875 ], "wind_a": 0.0 }, "109800": { "creation_time": 1779684602510, "p": [ 23290.60546875, 18794.5625, 43562.51171875 ], "wind_a": 0.0 }, "109801": { "creation_time": 1779684602510, "p": [ 23406.0078125, 18783.45703125, 43562.51171875 ], "wind_a": 0.0 }, "109802": { "creation_time": 1779684602510, "p": [ 23509.90625, 18744.5859375, 43562.51171875 ], "wind_a": 0.0 }, "109803": { "creation_time": 1779684602510, "p": [ 23603.982421875, 18682.0, 43562.51171875 ], "wind_a": 0.0 }, "109804": { "creation_time": 1779684602510, "p": [ 23696.966796875, 18616.78125, 43562.51171875 ], "wind_a": 0.0 }, "109805": { "creation_time": 1779684602510, "p": [ 23789.951171875, 18551.55859375, 43562.51171875 ], "wind_a": 0.0 }, "109806": { "creation_time": 1779684602510, "p": [ 23882.9375, 18486.33984375, 43562.51171875 ], "wind_a": 0.0 }, "109807": { "creation_time": 1779684602510, "p": [ 23983.40234375, 18439.18359375, 43562.51171875 ], "wind_a": 0.0 }, "109808": { "creation_time": 1779684602510, "p": [ 24086.796875, 18399.087890625, 43562.51171875 ], "wind_a": 0.0 }, "109809": { "creation_time": 1779684602510, "p": [ 24188.90234375, 18355.890625, 43562.51171875 ], "wind_a": 0.0 }, "109810": { "creation_time": 1779684602510, "p": [ 24289.029296875, 18307.91015625, 43562.51171875 ], "wind_a": 0.0 }, "109811": { "creation_time": 1779684602510, "p": [ 24380.38671875, 18238.763671875, 43562.51171875 ], "wind_a": 0.0 }, "109812": { "creation_time": 1779684602510, "p": [ 24453.4609375, 18149.03125, 43562.51171875 ], "wind_a": 0.0 }, "109813": { "creation_time": 1779684602510, "p": [ 24534.38671875, 18062.552734375, 43562.51171875 ], "wind_a": 0.0 }, "109814": { "creation_time": 1779684602510, "p": [ 24622.4921875, 17985.552734375, 43562.51171875 ], "wind_a": 0.0 }, "109815": { "creation_time": 1779684602510, "p": [ 24713.8515625, 17916.40625, 43562.51171875 ], "wind_a": 0.0 }, "109816": { "creation_time": 1779684602510, "p": [ 24804.2890625, 17845.033203125, 43562.51171875 ], "wind_a": 0.0 }, "109817": { "creation_time": 1779684602510, "p": [ 24890.0625, 17762.40625, 43562.51171875 ], "wind_a": 0.0 }, "109818": { "creation_time": 1779684602510, "p": [ 24967.0625, 17674.30078125, 43562.51171875 ], "wind_a": 0.0 }, "109819": { "creation_time": 1779684602510, "p": [ 25047.98828125, 17587.8203125, 43562.51171875 ], "wind_a": 0.0 }, "109820": { "creation_time": 1779684602510, "p": [ 25124.98828125, 17499.71484375, 43562.51171875 ], "wind_a": 0.0 }, "109821": { "creation_time": 1779684602510, "p": [ 25209.841796875, 17414.86328125, 43562.51171875 ], "wind_a": 0.0 }, "109822": { "creation_time": 1779684602510, "p": [ 25299.57421875, 17341.7890625, 43562.51171875 ], "wind_a": 0.0 }, "109823": { "creation_time": 1779684602510, "p": [ 25385.37890625, 17267.08984375, 43562.51171875 ], "wind_a": 0.0 }, "109824": { "creation_time": 1779684602510, "p": [ 25442.74609375, 17170.8515625, 43562.51171875 ], "wind_a": 0.0 }, "109825": { "creation_time": 1779684602510, "p": [ 25480.482421875, 17066.482421875, 43562.51171875 ], "wind_a": 0.0 }, "109826": { "creation_time": 1779684602510, "p": [ 25473.76953125, 16952.90234375, 43562.51171875 ], "wind_a": 0.0 }, "109827": { "creation_time": 1779684602510, "p": [ 25396.25, 16884.3984375, 43562.51171875 ], "wind_a": 0.0 }, "109828": { "creation_time": 1779684602510, "p": [ 25296.6953125, 16835.0390625, 43562.51171875 ], "wind_a": 0.0 }, "109829": { "creation_time": 1779684602510, "p": [ 25197.20703125, 16785.5234375, 43562.51171875 ], "wind_a": 0.0 }, "109830": { "creation_time": 1779684602510, "p": [ 25096.05078125, 16740.02734375, 43562.51171875 ], "wind_a": 0.0 }, "109831": { "creation_time": 1779684602510, "p": [ 24990.09375, 16706.126953125, 43562.51171875 ], "wind_a": 0.0 }, "109832": { "creation_time": 1779684602510, "p": [ 24885.953125, 16667.83984375, 43562.51171875 ], "wind_a": 0.0 }, "109833": { "creation_time": 1779684602510, "p": [ 24784.607421875, 16622.802734375, 43562.51171875 ], "wind_a": 0.0 }, "109834": { "creation_time": 1779684602510, "p": [ 24685.052734375, 16573.44140625, 43562.51171875 ], "wind_a": 0.0 }, "109835": { "creation_time": 1779684602510, "p": [ 24581.15234375, 16534.57421875, 43562.51171875 ], "wind_a": 0.0 }, "109836": { "creation_time": 1779684602510, "p": [ 24479.5546875, 16490.150390625, 43562.51171875 ], "wind_a": 0.0 }, "109837": { "creation_time": 1779684602510, "p": [ 24376.888671875, 16448.30078125, 43562.51171875 ], "wind_a": 0.0 }, "109838": { "creation_time": 1779684602510, "p": [ 24274.0546875, 16406.859375, 43562.51171875 ], "wind_a": 0.0 }, "109839": { "creation_time": 1779684602510, "p": [ 24172.455078125, 16362.435546875, 43562.51171875 ], "wind_a": 0.0 }, "109840": { "creation_time": 1779684602510, "p": [ 24070.85546875, 16318.013671875, 43562.51171875 ], "wind_a": 0.0 }, "109841": { "creation_time": 1779684602510, "p": [ 23966.955078125, 16279.14453125, 43562.51171875 ], "wind_a": 0.0 }, "109842": { "creation_time": 1779684602510, "p": [ 23935.64453125, 16268.0390625, 43562.51171875 ], "wind_a": 0.0 } } } } }, "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ], "vc3d_volume_shape_zyx": [ 18946, 8174, 8174 ] }, "format": "tifxyz", "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "lasagna_job": { "config": { "args": { "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "init-mode": "shell-dir-crop", "mesh-step": 50.0, "model-h": 5000.0, "model-init": "seed", "model-w": 5000.0, "model-w-unit": "voxels", "seed": [ 6133.5966796875, 4515.63818359375, 10890.6279296875 ], "tifxyz-flow-gate-channels": true, "windings": 1 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "2640": { "color": [ 1.0, 0.1568627506494522, 0.1568627506494522 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap2458", "points": { "109784": { "creation_time": 1779684602510, "p": [ 5396.70263671875, 4826.35498046875, 10890.6279296875 ], "wind_a": 0.0 }, "109785": { "creation_time": 1779684602510, "p": [ 5423.82763671875, 4819.4140625, 10890.6279296875 ], "wind_a": 0.0 }, "109786": { "creation_time": 1779684602510, "p": [ 5450.37744140625, 4811.0849609375, 10890.6279296875 ], "wind_a": 0.0 }, "109787": { "creation_time": 1779684602510, "p": [ 5477.50244140625, 4804.1435546875, 10890.6279296875 ], "wind_a": 0.0 }, "109788": { "creation_time": 1779684602510, "p": [ 5505.2021484375, 4798.5908203125, 10890.6279296875 ], "wind_a": 0.0 }, "109789": { "creation_time": 1779684602510, "p": [ 5533.669921875, 4796.73828125, 10890.6279296875 ], "wind_a": 0.0 }, "109790": { "creation_time": 1779684602510, "p": [ 5562.20166015625, 4794.123046875, 10890.6279296875 ], "wind_a": 0.0 }, "109791": { "creation_time": 1779684602510, "p": [ 5586.26123046875, 4779.78125, 10890.6279296875 ], "wind_a": 0.0 }, "109792": { "creation_time": 1779684602510, "p": [ 5609.10205078125, 4762.498046875, 10890.6279296875 ], "wind_a": 0.0 }, "109793": { "creation_time": 1779684602510, "p": [ 5634.7861328125, 4752.0791015625, 10890.6279296875 ], "wind_a": 0.0 }, "109794": { "creation_time": 1779684602510, "p": [ 5659.3271484375, 4738.8984375, 10890.6279296875 ], "wind_a": 0.0 }, "109795": { "creation_time": 1779684602510, "p": [ 5684.9384765625, 4728.302734375, 10890.6279296875 ], "wind_a": 0.0 }, "109796": { "creation_time": 1779684602510, "p": [ 5711.43701171875, 4719.8505859375, 10890.6279296875 ], "wind_a": 0.0 }, "109797": { "creation_time": 1779684602510, "p": [ 5739.5517578125, 4715.298828125, 10890.6279296875 ], "wind_a": 0.0 }, "109798": { "creation_time": 1779684602510, "p": [ 5766.87451171875, 4708.83544921875, 10890.6279296875 ], "wind_a": 0.0 }, "109799": { "creation_time": 1779684602510, "p": [ 5793.8017578125, 4701.4169921875, 10890.6279296875 ], "wind_a": 0.0 }, "109800": { "creation_time": 1779684602510, "p": [ 5822.6513671875, 4698.640625, 10890.6279296875 ], "wind_a": 0.0 }, "109801": { "creation_time": 1779684602510, "p": [ 5851.501953125, 4695.8642578125, 10890.6279296875 ], "wind_a": 0.0 }, "109802": { "creation_time": 1779684602510, "p": [ 5877.4765625, 4686.146484375, 10890.6279296875 ], "wind_a": 0.0 }, "109803": { "creation_time": 1779684602510, "p": [ 5900.99560546875, 4670.5, 10890.6279296875 ], "wind_a": 0.0 }, "109804": { "creation_time": 1779684602510, "p": [ 5924.24169921875, 4654.1953125, 10890.6279296875 ], "wind_a": 0.0 }, "109805": { "creation_time": 1779684602510, "p": [ 5947.48779296875, 4637.8896484375, 10890.6279296875 ], "wind_a": 0.0 }, "109806": { "creation_time": 1779684602510, "p": [ 5970.734375, 4621.5849609375, 10890.6279296875 ], "wind_a": 0.0 }, "109807": { "creation_time": 1779684602510, "p": [ 5995.8505859375, 4609.7958984375, 10890.6279296875 ], "wind_a": 0.0 }, "109808": { "creation_time": 1779684602510, "p": [ 6021.69921875, 4599.77197265625, 10890.6279296875 ], "wind_a": 0.0 }, "109809": { "creation_time": 1779684602510, "p": [ 6047.2255859375, 4588.97265625, 10890.6279296875 ], "wind_a": 0.0 }, "109810": { "creation_time": 1779684602510, "p": [ 6072.25732421875, 4576.9775390625, 10890.6279296875 ], "wind_a": 0.0 }, "109811": { "creation_time": 1779684602510, "p": [ 6095.0966796875, 4559.69091796875, 10890.6279296875 ], "wind_a": 0.0 }, "109812": { "creation_time": 1779684602510, "p": [ 6113.365234375, 4537.2578125, 10890.6279296875 ], "wind_a": 0.0 }, "109813": { "creation_time": 1779684602510, "p": [ 6133.5966796875, 4515.63818359375, 10890.6279296875 ], "wind_a": 0.0 }, "109814": { "creation_time": 1779684602510, "p": [ 6155.623046875, 4496.38818359375, 10890.6279296875 ], "wind_a": 0.0 }, "109815": { "creation_time": 1779684602510, "p": [ 6178.462890625, 4479.1015625, 10890.6279296875 ], "wind_a": 0.0 }, "109816": { "creation_time": 1779684602510, "p": [ 6201.072265625, 4461.25830078125, 10890.6279296875 ], "wind_a": 0.0 }, "109817": { "creation_time": 1779684602510, "p": [ 6222.515625, 4440.6015625, 10890.6279296875 ], "wind_a": 0.0 }, "109818": { "creation_time": 1779684602510, "p": [ 6241.765625, 4418.5751953125, 10890.6279296875 ], "wind_a": 0.0 }, "109819": { "creation_time": 1779684602510, "p": [ 6261.9970703125, 4396.955078125, 10890.6279296875 ], "wind_a": 0.0 }, "109820": { "creation_time": 1779684602510, "p": [ 6281.2470703125, 4374.9287109375, 10890.6279296875 ], "wind_a": 0.0 }, "109821": { "creation_time": 1779684602510, "p": [ 6302.46044921875, 4353.7158203125, 10890.6279296875 ], "wind_a": 0.0 }, "109822": { "creation_time": 1779684602510, "p": [ 6324.8935546875, 4335.447265625, 10890.6279296875 ], "wind_a": 0.0 }, "109823": { "creation_time": 1779684602510, "p": [ 6346.3447265625, 4316.7724609375, 10890.6279296875 ], "wind_a": 0.0 }, "109824": { "creation_time": 1779684602510, "p": [ 6360.6865234375, 4292.712890625, 10890.6279296875 ], "wind_a": 0.0 }, "109825": { "creation_time": 1779684602510, "p": [ 6370.12060546875, 4266.62060546875, 10890.6279296875 ], "wind_a": 0.0 }, "109826": { "creation_time": 1779684602510, "p": [ 6368.4423828125, 4238.2255859375, 10890.6279296875 ], "wind_a": 0.0 }, "109827": { "creation_time": 1779684602510, "p": [ 6349.0625, 4221.099609375, 10890.6279296875 ], "wind_a": 0.0 }, "109828": { "creation_time": 1779684602510, "p": [ 6324.173828125, 4208.759765625, 10890.6279296875 ], "wind_a": 0.0 }, "109829": { "creation_time": 1779684602510, "p": [ 6299.3017578125, 4196.380859375, 10890.6279296875 ], "wind_a": 0.0 }, "109830": { "creation_time": 1779684602510, "p": [ 6274.0126953125, 4185.0068359375, 10890.6279296875 ], "wind_a": 0.0 }, "109831": { "creation_time": 1779684602510, "p": [ 6247.5234375, 4176.53173828125, 10890.6279296875 ], "wind_a": 0.0 }, "109832": { "creation_time": 1779684602510, "p": [ 6221.48828125, 4166.9599609375, 10890.6279296875 ], "wind_a": 0.0 }, "109833": { "creation_time": 1779684602510, "p": [ 6196.15185546875, 4155.70068359375, 10890.6279296875 ], "wind_a": 0.0 }, "109834": { "creation_time": 1779684602510, "p": [ 6171.26318359375, 4143.3603515625, 10890.6279296875 ], "wind_a": 0.0 }, "109835": { "creation_time": 1779684602510, "p": [ 6145.2880859375, 4133.6435546875, 10890.6279296875 ], "wind_a": 0.0 }, "109836": { "creation_time": 1779684602510, "p": [ 6119.888671875, 4122.53759765625, 10890.6279296875 ], "wind_a": 0.0 }, "109837": { "creation_time": 1779684602510, "p": [ 6094.22216796875, 4112.0751953125, 10890.6279296875 ], "wind_a": 0.0 }, "109838": { "creation_time": 1779684602510, "p": [ 6068.513671875, 4101.71484375, 10890.6279296875 ], "wind_a": 0.0 }, "109839": { "creation_time": 1779684602510, "p": [ 6043.11376953125, 4090.60888671875, 10890.6279296875 ], "wind_a": 0.0 }, "109840": { "creation_time": 1779684602510, "p": [ 6017.7138671875, 4079.50341796875, 10890.6279296875 ], "wind_a": 0.0 }, "109841": { "creation_time": 1779684602510, "p": [ 5991.73876953125, 4069.7861328125, 10890.6279296875 ], "wind_a": 0.0 }, "109842": { "creation_time": 1779684602510, "p": [ 5983.9111328125, 4067.009765625, 10890.6279296875 ], "wind_a": 0.0 } } } } }, "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ] }, "linked_surfaces": [], "model": null, "volume_shape_zyx": [ 18946, 8174, 8174 ] }, "model_source": "/tmp/fit_reopt_5ap61w6o/model_reopt.pt", "scale": [ 0.07999999821186066, 0.07999999821186066 ], "tags": { "date_last_modified": "20260614185644534", "reviewed": { "date": "20260604080934272" } }, "type": "seg", "uuid": "same_wrap002458_lasagna" }