{ "area_vx2": 806562.5, "base_shape_zyx": [ 18946, 8174, 8174 ], "bbox": [ [ 3332.08837890625, 2431.68896484375, 8681.3369140625 ], [ 3761.555908203125, 2869.409423828125, 9945.130859375 ] ], "extra_channels": [ { "dtype": "float32", "file": "flow_gate_local_contrast.tif", "name": "flow_gate_local_contrast", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.local_contrast", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } }, { "dtype": "float32", "file": "flow_gate_component_normalized.tif", "name": "flow_gate_component_normalized", "range": [ 0.0, 1.0 ], "source": "pred_dt_flow_gate.component_normalized", "source_config": { "backtrack_distance": 50.0, "gate_factor": 1.0, "grid_step": 4, "local_boost": 0.5 } } ], "fit_config": { "_corr_point_roi_init_": { "effective_seed": [ 13690.7998046875, 10358.5556640625, 37651.59765625 ], "final_anchor_h": 222.06995192170143, "final_anchor_w": 132.39587053656578, "final_shell_id": "shell_0005.tifxyz", "final_trim_bottom": 34, "final_trim_top": 3, "init_margin_grid_points": 80, "initial_seed": [ 13691.7578125, 10358.8359375, 36879.96875 ], "initial_shell_id": "shell_0005.tifxyz", "initial_skipped_point_count": 0, "initial_skipped_reasons": {}, "initial_trim_bottom": 34, "initial_trim_top": 3, "initial_usable_point_count": 52, "mode": "corr-point-roi", "model_h": 8904.621124267578, "model_w": 8078.4515380859375, "model_w_unit": "voxels", "output_radius_grid_points": 20, "parsed_point_count": 52, "projected_h_span_grid": 18.092422485351563, "projected_h_span_vx": 904.6211242675781, "projected_points": [ { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 12.680567530214926, "h": 209.4469757080078, "point_id": 152263, "row_index": 0, "w": 133.60304260253906 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 12.444930841015793, "h": 209.6702423095703, "point_id": 152264, "row_index": 1, "w": 133.45582580566406 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 12.282958963415874, "h": 209.8266143798828, "point_id": 152265, "row_index": 2, "w": 133.38165283203125 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 11.983910816403428, "h": 210.13392639160156, "point_id": 152266, "row_index": 3, "w": 133.4661102294922 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 11.687532727923761, "h": 210.44187927246094, "point_id": 152267, "row_index": 4, "w": 133.57330322265625 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 11.336789570255695, "h": 210.8118896484375, "point_id": 152268, "row_index": 5, "w": 133.72959899902344 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 10.986784112078166, "h": 211.18467712402344, "point_id": 152269, "row_index": 6, "w": 133.8859100341797 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 10.578394869042278, "h": 211.61013793945313, "point_id": 152270, "row_index": 7, "w": 133.975341796875 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 10.119112836022618, "h": 212.06747436523438, "point_id": 152271, "row_index": 8, "w": 133.92782592773438 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 9.68589442079008, "h": 212.4835968017578, "point_id": 152272, "row_index": 9, "w": 133.78091430664063 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 9.330998766449316, "h": 212.8099365234375, "point_id": 152273, "row_index": 10, "w": 133.5446319580078 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 8.992677395548753, "h": 213.12200927734375, "point_id": 152274, "row_index": 11, "w": 133.29173278808594 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 8.709283374531177, "h": 213.38499450683594, "point_id": 152275, "row_index": 12, "w": 133.04635620117188 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 8.44778645148525, "h": 213.63504028320313, "point_id": 152276, "row_index": 13, "w": 132.86209106445313 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 8.090078816815609, "h": 213.9895782470703, "point_id": 152277, "row_index": 14, "w": 132.79202270507813 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 7.868569311228017, "h": 214.20875549316406, "point_id": 152278, "row_index": 15, "w": 132.73641967773438 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 7.588889341195142, "h": 214.48873901367188, "point_id": 152279, "row_index": 16, "w": 132.73712158203125 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 7.185755705900378, "h": 214.89443969726563, "point_id": 152280, "row_index": 17, "w": 132.7794189453125 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 6.788091910386535, "h": 215.2945098876953, "point_id": 152281, "row_index": 18, "w": 132.81008911132813 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 6.413425357455611, "h": 215.66954040527344, "point_id": 152282, "row_index": 19, "w": 132.80422973632813 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 6.006661717946665, "h": 216.07701110839844, "point_id": 152283, "row_index": 20, "w": 132.8016357421875 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 5.6766591562061555, "h": 216.40406799316406, "point_id": 152284, "row_index": 21, "w": 132.74546813964844 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 5.295672840276629, "h": 216.782470703125, "point_id": 152285, "row_index": 22, "w": 132.6903076171875 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 4.942856537308549, "h": 217.13478088378906, "point_id": 152286, "row_index": 23, "w": 132.67140197753906 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 4.526068080789368, "h": 217.5509490966797, "point_id": 152287, "row_index": 24, "w": 132.64866638183594 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 4.24205879476333, "h": 217.83204650878906, "point_id": 152288, "row_index": 25, "w": 132.5835418701172 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 3.7356355380963606, "h": 218.3357696533203, "point_id": 152289, "row_index": 26, "w": 132.50006103515625 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 3.3831152004169494, "h": 218.6881103515625, "point_id": 152290, "row_index": 27, "w": 132.4886932373047 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 2.9863461498632526, "h": 219.0860595703125, "point_id": 152291, "row_index": 28, "w": 132.51690673828125 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 2.671354899736509, "h": 219.4025115966797, "point_id": 152292, "row_index": 29, "w": 132.54043579101563 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 2.2279220132426834, "h": 219.84800720214844, "point_id": 152293, "row_index": 30, "w": 132.5589599609375 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 0.3557039325483078, "h": 221.7144012451172, "point_id": 152294, "row_index": 31, "w": 132.40631103515625 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 1.5846587718535465, "h": 220.5089111328125, "point_id": 152295, "row_index": 32, "w": 132.66844177246094 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 1.2599309629025437, "h": 220.84625244140625, "point_id": 152296, "row_index": 33, "w": 132.6958465576172 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 0.780630707564485, "h": 221.33489990234375, "point_id": 152297, "row_index": 34, "w": 132.65870666503906 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 0.40272099425184993, "h": 221.71255493164063, "point_id": 152298, "row_index": 35, "w": 132.58148193359375 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 4.417846968497, "h": 217.68592834472656, "point_id": 152299, "row_index": 36, "w": 132.94149780273438 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 0.4446349856568018, "h": 222.49642944335938, "point_id": 152300, "row_index": 37, "w": 132.52163696289063 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 0.7627984083348341, "h": 222.8163604736328, "point_id": 152301, "row_index": 38, "w": 132.5531463623047 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 1.2287066278231393, "h": 223.28672790527344, "point_id": 152302, "row_index": 39, "w": 132.56668090820313 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 1.5653845451240114, "h": 223.6243133544922, "point_id": 152303, "row_index": 40, "w": 132.58131408691406 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 2.0016201888677347, "h": 224.06387329101563, "point_id": 152304, "row_index": 41, "w": 132.57125854492188 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 2.351061321743221, "h": 224.4168701171875, "point_id": 152305, "row_index": 42, "w": 132.53538513183594 }, { "collection_id": 3586, "direction_sign": 1, "grid_distance_to_anchor": 2.914174700471636, "h": 224.9812469482422, "point_id": 152306, "row_index": 43, "w": 132.525390625 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 1.6354347825950675, "h": 223.67178344726563, "point_id": 152307, "row_index": 44, "w": 132.72569274902344 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 3.3829000098914714, "h": 225.43382263183594, "point_id": 152308, "row_index": 45, "w": 132.75418090820313 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 3.6809602734319333, "h": 225.7287139892578, "point_id": 152309, "row_index": 46, "w": 132.7995147705078 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 3.9865561834899608, "h": 226.03379821777344, "point_id": 152310, "row_index": 47, "w": 132.82078552246094 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 4.292333644566115, "h": 226.34120178222656, "point_id": 152311, "row_index": 48, "w": 132.82078552246094 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 4.621608485544164, "h": 226.67527770996094, "point_id": 152312, "row_index": 49, "w": 132.78347778320313 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 5.0573474728962164, "h": 227.1187744140625, "point_id": 152313, "row_index": 50, "w": 132.68939208984375 }, { "collection_id": 3586, "direction_sign": -1, "grid_distance_to_anchor": 5.474422776152916, "h": 227.53939819335938, "point_id": 152314, "row_index": 51, "w": 132.62924194335938 } ], "projected_w_span_grid": 1.56903076171875, "projected_w_span_vx": 78.4515380859375, "projection_mode": "normal-line", "skipped_point_count": 0, "skipped_points": [], "skipped_reasons": {}, "usable_point_count": 52, "windings": 1 }, "args": { "approval-inpaint": false, "approval-inpaint-corr-spacing": null, "approval-inpaint-output-mask": false, "approval-inpaint-output-mask-dilate": 3, "approval-inpaint-padding-frac": 0.25, "approval-inpaint-tifxyz": null, "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "crop": null, "cuda-gridsample": 1, "depth": 1, "device": "cuda", "downscale": 4.0, "erode-valid-mask": 0, "flatten-solver": "torch", "init-mode": "shell-dir-crop", "input": "/ephemeral/lasag_strip_outputs/.lasagna_point_strip_work/collection_3586/point_strip.lasagna.json", "mesh-h": 32, "mesh-step": 50, "mesh-w": 32, "model-h": 8904.621124267578, "model-init": "seed", "model-input": null, "model-output": "/tmp/fit_reopt_q1rcggan/model_reopt.pt", "model-w": 8078.4515380859375, "model-w-unit": "voxels", "normal-mask-zero": 0, "out-dir": null, "progress": true, "pyramid-d": false, "seed": [ 13690.7998046875, 10358.5556640625, 37651.59765625 ], "snapshot-interval": 1000, "sparse-prefetch-backend": "tensorstore", "subsample-mesh": 4, "subsample-winding": 4, "tifxyz-flow-gate-channels": true, "tifxyz-init": null, "winding-step": 25, "winding-volume": null, "windings": 1, "z-center": 0.0 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "3586": { "color": [ 0.0, 0.7450980544090271, 0.6274510025978088 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap3280", "points": { "152263": { "creation_time": 1779833093703, "p": [ 13943.4580078125, 10432.41015625, 35058.6015625 ], "wind_a": 0.0 }, "152264": { "creation_time": 1779833093703, "p": [ 13930.3896484375, 10428.58984375, 35132.9609375 ], "wind_a": 0.0 }, "152265": { "creation_time": 1779833093703, "p": [ 13936.9794921875, 10430.5166015625, 35204.62109375 ], "wind_a": 0.0 }, "152266": { "creation_time": 1779833093703, "p": [ 13962.892578125, 10438.0908203125, 35273.4375 ], "wind_a": 0.0 }, "152267": { "creation_time": 1779833093703, "p": [ 13993.5068359375, 10447.0400390625, 35340.2265625 ], "wind_a": 0.0 }, "152268": { "creation_time": 1779833093703, "p": [ 14027.6767578125, 10457.0283203125, 35405.48046875 ], "wind_a": 0.0 }, "152269": { "creation_time": 1779833093703, "p": [ 14060.87109375, 10466.73046875, 35471.15625 ], "wind_a": 0.0 }, "152270": { "creation_time": 1779833093703, "p": [ 14079.50390625, 10472.177734375, 35543.11328125 ], "wind_a": 0.0 }, "152271": { "creation_time": 1779833093703, "p": [ 14072.0009765625, 10469.984375, 35619.875 ], "wind_a": 0.0 }, "152272": { "creation_time": 1779833093703, "p": [ 14040.609375, 10460.80859375, 35686.328125 ], "wind_a": 0.0 }, "152273": { "creation_time": 1779833093703, "p": [ 13990.8935546875, 10446.2763671875, 35744.875 ], "wind_a": 0.0 }, "152274": { "creation_time": 1779833093703, "p": [ 13934.7001953125, 10429.849609375, 35796.671875 ], "wind_a": 0.0 }, "152275": { "creation_time": 1779833093703, "p": [ 13876.6083984375, 10412.869140625, 35843.6953125 ], "wind_a": 0.0 }, "152276": { "creation_time": 1779833093703, "p": [ 13824.9951171875, 10397.7822265625, 35897.46875 ], "wind_a": 0.0 }, "152277": { "creation_time": 1779833093703, "p": [ 13793.603515625, 10388.6064453125, 35963.921875 ], "wind_a": 0.0 }, "152278": { "creation_time": 1779833093703, "p": [ 13762.0625, 10379.38671875, 36030.30859375 ], "wind_a": 0.0 }, "152279": { "creation_time": 1779833093703, "p": [ 13744.5625, 10374.271484375, 36102.7578125 ], "wind_a": 0.0 }, "152280": { "creation_time": 1779833093703, "p": [ 13736.1484375, 10371.8115234375, 36179.125 ], "wind_a": 0.0 }, "152281": { "creation_time": 1779833093703, "p": [ 13729.669921875, 10369.91796875, 36256.328125 ], "wind_a": 0.0 }, "152282": { "creation_time": 1779833093703, "p": [ 13719.1015625, 10366.8291015625, 36331.76953125 ], "wind_a": 0.0 }, "152283": { "creation_time": 1779833093703, "p": [ 13716.712890625, 10366.130859375, 36410.73828125 ], "wind_a": 0.0 }, "152284": { "creation_time": 1779833093703, "p": [ 13710.234375, 10364.2373046875, 36487.94140625 ], "wind_a": 0.0 }, "152285": { "creation_time": 1779833093703, "p": [ 13703.7568359375, 10362.34375, 36565.1484375 ], "wind_a": 0.0 }, "152286": { "creation_time": 1779833093703, "p": [ 13697.2783203125, 10360.4501953125, 36642.3515625 ], "wind_a": 0.0 }, "152287": { "creation_time": 1779833093703, "p": [ 13697.2783203125, 10360.4501953125, 36722.3515625 ], "wind_a": 0.0 }, "152288": { "creation_time": 1779833093703, "p": [ 13697.2783203125, 10360.4501953125, 36802.3515625 ], "wind_a": 0.0 }, "152289": { "creation_time": 1779833093703, "p": [ 13691.7578125, 10358.8359375, 36879.96875 ], "wind_a": 0.0 }, "152290": { "creation_time": 1779833093703, "p": [ 13684.3212890625, 10356.662109375, 36956.7578125 ], "wind_a": 0.0 }, "152291": { "creation_time": 1779833093703, "p": [ 13677.8427734375, 10354.7685546875, 37033.96484375 ], "wind_a": 0.0 }, "152292": { "creation_time": 1779833093703, "p": [ 13671.3642578125, 10352.875, 37111.16796875 ], "wind_a": 0.0 }, "152293": { "creation_time": 1779833093703, "p": [ 13671.3642578125, 10352.875, 37191.16796875 ], "wind_a": 0.0 }, "152294": { "creation_time": 1779833093703, "p": [ 13664.8857421875, 10350.9814453125, 37268.37109375 ], "wind_a": 0.0 }, "152295": { "creation_time": 1779833093703, "p": [ 13671.3642578125, 10352.875, 37345.578125 ], "wind_a": 0.0 }, "152296": { "creation_time": 1779833093703, "p": [ 13684.3212890625, 10356.662109375, 37419.984375 ], "wind_a": 0.0 }, "152297": { "creation_time": 1779833093703, "p": [ 13690.7998046875, 10358.5556640625, 37497.1875 ], "wind_a": 0.0 }, "152298": { "creation_time": 1779833093703, "p": [ 13697.2783203125, 10360.4501953125, 37574.39453125 ], "wind_a": 0.0 }, "152299": { "creation_time": 1779833093703, "p": [ 13690.7998046875, 10358.5556640625, 37651.59765625 ], "wind_a": 0.0 }, "152300": { "creation_time": 1779833093703, "p": [ 13690.7998046875, 10358.5556640625, 37731.59765625 ], "wind_a": 0.0 }, "152301": { "creation_time": 1779833093703, "p": [ 13697.2783203125, 10360.4501953125, 37808.80078125 ], "wind_a": 0.0 }, "152302": { "creation_time": 1779833093703, "p": [ 13703.7568359375, 10362.34375, 37886.0078125 ], "wind_a": 0.0 }, "152303": { "creation_time": 1779833093703, "p": [ 13716.712890625, 10366.130859375, 37960.4140625 ], "wind_a": 0.0 }, "152304": { "creation_time": 1779833093703, "p": [ 13723.19140625, 10368.0244140625, 38037.6171875 ], "wind_a": 0.0 }, "152305": { "creation_time": 1779833093703, "p": [ 13723.19140625, 10368.0244140625, 38117.6171875 ], "wind_a": 0.0 }, "152306": { "creation_time": 1779833093703, "p": [ 13716.712890625, 10366.130859375, 38194.82421875 ], "wind_a": 0.0 }, "152307": { "creation_time": 1779833093703, "p": [ 13710.234375, 10364.2373046875, 38272.02734375 ], "wind_a": 0.0 }, "152308": { "creation_time": 1779833093703, "p": [ 13723.19140625, 10368.0244140625, 38346.4375 ], "wind_a": 0.0 }, "152309": { "creation_time": 1779833093703, "p": [ 13742.626953125, 10373.7060546875, 38418.046875 ], "wind_a": 0.0 }, "152310": { "creation_time": 1779833093703, "p": [ 13763.630859375, 10379.8447265625, 38488.984375 ], "wind_a": 0.0 }, "152311": { "creation_time": 1779833093703, "p": [ 13790.44140625, 10387.6826171875, 38557.4140625 ], "wind_a": 0.0 }, "152312": { "creation_time": 1779833093703, "p": [ 13821.8330078125, 10396.8583984375, 38623.8671875 ], "wind_a": 0.0 }, "152313": { "creation_time": 1779833093703, "p": [ 13853.2255859375, 10406.0341796875, 38690.3203125 ], "wind_a": 0.0 }, "152314": { "creation_time": 1779833093703, "p": [ 13885.15234375, 10415.3671875, 38756.54296875 ], "wind_a": 0.0 } } } } }, "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ], "vc3d_volume_shape_zyx": [ 18946, 8174, 8174 ] }, "format": "tifxyz", "lasagna_base_shape_zyx": [ 75784, 32693, 32693 ], "lasagna_job": { "config": { "args": { "corr-point-roi": true, "corr-point-roi-init-margin": 80, "corr-point-roi-output-radius": 20, "init-mode": "shell-dir-crop", "mesh-step": 50.0, "model-h": 5000.0, "model-init": "seed", "model-w": 5000.0, "model-w-unit": "voxels", "seed": [ 3422.939453125, 2589.708984375, 9219.9921875 ], "tifxyz-flow-gate-channels": true, "windings": 1 }, "base": { "bend": 100.0, "corr": 0.0001, "data": 0.0, "data_plain": 0.0, "ext_offset": 0.0, "normal": 1.0, "pred_dt": 0.001, "smooth": 10.0, "station_n": 0.1, "station_t": 0.1, "step": 10.0, "winding_density": 0.01 }, "corr_points": { "collections": { "3586": { "color": [ 0.0, 0.7450980544090271, 0.6274510025978088 ], "metadata": { "winding_is_absolute": true }, "name": "same_wrap3280", "points": { "152263": { "creation_time": 1779833093703, "p": [ 3485.864501953125, 2608.1025390625, 8764.650390625 ], "wind_a": 0.0 }, "152264": { "creation_time": 1779833093703, "p": [ 3482.597412109375, 2607.1474609375, 8783.240234375 ], "wind_a": 0.0 }, "152265": { "creation_time": 1779833093703, "p": [ 3484.244873046875, 2607.629150390625, 8801.1552734375 ], "wind_a": 0.0 }, "152266": { "creation_time": 1779833093703, "p": [ 3490.72314453125, 2609.522705078125, 8818.359375 ], "wind_a": 0.0 }, "152267": { "creation_time": 1779833093703, "p": [ 3498.376708984375, 2611.760009765625, 8835.056640625 ], "wind_a": 0.0 }, "152268": { "creation_time": 1779833093703, "p": [ 3506.919189453125, 2614.257080078125, 8851.3701171875 ], "wind_a": 0.0 }, "152269": { "creation_time": 1779833093703, "p": [ 3515.2177734375, 2616.6826171875, 8867.7890625 ], "wind_a": 0.0 }, "152270": { "creation_time": 1779833093703, "p": [ 3519.8759765625, 2618.04443359375, 8885.7783203125 ], "wind_a": 0.0 }, "152271": { "creation_time": 1779833093703, "p": [ 3518.000244140625, 2617.49609375, 8904.96875 ], "wind_a": 0.0 }, "152272": { "creation_time": 1779833093703, "p": [ 3510.15234375, 2615.2021484375, 8921.58203125 ], "wind_a": 0.0 }, "152273": { "creation_time": 1779833093703, "p": [ 3497.723388671875, 2611.569091796875, 8936.21875 ], "wind_a": 0.0 }, "152274": { "creation_time": 1779833093703, "p": [ 3483.675048828125, 2607.46240234375, 8949.16796875 ], "wind_a": 0.0 }, "152275": { "creation_time": 1779833093703, "p": [ 3469.152099609375, 2603.21728515625, 8960.923828125 ], "wind_a": 0.0 }, "152276": { "creation_time": 1779833093703, "p": [ 3456.248779296875, 2599.445556640625, 8974.3671875 ], "wind_a": 0.0 }, "152277": { "creation_time": 1779833093703, "p": [ 3448.40087890625, 2597.151611328125, 8990.98046875 ], "wind_a": 0.0 }, "152278": { "creation_time": 1779833093703, "p": [ 3440.515625, 2594.8466796875, 9007.5771484375 ], "wind_a": 0.0 }, "152279": { "creation_time": 1779833093703, "p": [ 3436.140625, 2593.56787109375, 9025.689453125 ], "wind_a": 0.0 }, "152280": { "creation_time": 1779833093703, "p": [ 3434.037109375, 2592.952880859375, 9044.78125 ], "wind_a": 0.0 }, "152281": { "creation_time": 1779833093703, "p": [ 3432.41748046875, 2592.4794921875, 9064.08203125 ], "wind_a": 0.0 }, "152282": { "creation_time": 1779833093703, "p": [ 3429.775390625, 2591.707275390625, 9082.9423828125 ], "wind_a": 0.0 }, "152283": { "creation_time": 1779833093703, "p": [ 3429.17822265625, 2591.53271484375, 9102.6845703125 ], "wind_a": 0.0 }, "152284": { "creation_time": 1779833093703, "p": [ 3427.55859375, 2591.059326171875, 9121.9853515625 ], "wind_a": 0.0 }, "152285": { "creation_time": 1779833093703, "p": [ 3425.939208984375, 2590.5859375, 9141.287109375 ], "wind_a": 0.0 }, "152286": { "creation_time": 1779833093703, "p": [ 3424.319580078125, 2590.112548828125, 9160.587890625 ], "wind_a": 0.0 }, "152287": { "creation_time": 1779833093703, "p": [ 3424.319580078125, 2590.112548828125, 9180.587890625 ], "wind_a": 0.0 }, "152288": { "creation_time": 1779833093703, "p": [ 3424.319580078125, 2590.112548828125, 9200.587890625 ], "wind_a": 0.0 }, "152289": { "creation_time": 1779833093703, "p": [ 3422.939453125, 2589.708984375, 9219.9921875 ], "wind_a": 0.0 }, "152290": { "creation_time": 1779833093703, "p": [ 3421.080322265625, 2589.16552734375, 9239.189453125 ], "wind_a": 0.0 }, "152291": { "creation_time": 1779833093703, "p": [ 3419.460693359375, 2588.692138671875, 9258.4912109375 ], "wind_a": 0.0 }, "152292": { "creation_time": 1779833093703, "p": [ 3417.841064453125, 2588.21875, 9277.7919921875 ], "wind_a": 0.0 }, "152293": { "creation_time": 1779833093703, "p": [ 3417.841064453125, 2588.21875, 9297.7919921875 ], "wind_a": 0.0 }, "152294": { "creation_time": 1779833093703, "p": [ 3416.221435546875, 2587.745361328125, 9317.0927734375 ], "wind_a": 0.0 }, "152295": { "creation_time": 1779833093703, "p": [ 3417.841064453125, 2588.21875, 9336.39453125 ], "wind_a": 0.0 }, "152296": { "creation_time": 1779833093703, "p": [ 3421.080322265625, 2589.16552734375, 9354.99609375 ], "wind_a": 0.0 }, "152297": { "creation_time": 1779833093703, "p": [ 3422.699951171875, 2589.638916015625, 9374.296875 ], "wind_a": 0.0 }, "152298": { "creation_time": 1779833093703, "p": [ 3424.319580078125, 2590.112548828125, 9393.5986328125 ], "wind_a": 0.0 }, "152299": { "creation_time": 1779833093703, "p": [ 3422.699951171875, 2589.638916015625, 9412.8994140625 ], "wind_a": 0.0 }, "152300": { "creation_time": 1779833093703, "p": [ 3422.699951171875, 2589.638916015625, 9432.8994140625 ], "wind_a": 0.0 }, "152301": { "creation_time": 1779833093703, "p": [ 3424.319580078125, 2590.112548828125, 9452.2001953125 ], "wind_a": 0.0 }, "152302": { "creation_time": 1779833093703, "p": [ 3425.939208984375, 2590.5859375, 9471.501953125 ], "wind_a": 0.0 }, "152303": { "creation_time": 1779833093703, "p": [ 3429.17822265625, 2591.53271484375, 9490.103515625 ], "wind_a": 0.0 }, "152304": { "creation_time": 1779833093703, "p": [ 3430.7978515625, 2592.006103515625, 9509.404296875 ], "wind_a": 0.0 }, "152305": { "creation_time": 1779833093703, "p": [ 3430.7978515625, 2592.006103515625, 9529.404296875 ], "wind_a": 0.0 }, "152306": { "creation_time": 1779833093703, "p": [ 3429.17822265625, 2591.53271484375, 9548.7060546875 ], "wind_a": 0.0 }, "152307": { "creation_time": 1779833093703, "p": [ 3427.55859375, 2591.059326171875, 9568.0068359375 ], "wind_a": 0.0 }, "152308": { "creation_time": 1779833093703, "p": [ 3430.7978515625, 2592.006103515625, 9586.609375 ], "wind_a": 0.0 }, "152309": { "creation_time": 1779833093703, "p": [ 3435.65673828125, 2593.426513671875, 9604.51171875 ], "wind_a": 0.0 }, "152310": { "creation_time": 1779833093703, "p": [ 3440.90771484375, 2594.961181640625, 9622.24609375 ], "wind_a": 0.0 }, "152311": { "creation_time": 1779833093703, "p": [ 3447.6103515625, 2596.920654296875, 9639.353515625 ], "wind_a": 0.0 }, "152312": { "creation_time": 1779833093703, "p": [ 3455.458251953125, 2599.214599609375, 9655.966796875 ], "wind_a": 0.0 }, "152313": { "creation_time": 1779833093703, "p": [ 3463.306396484375, 2601.508544921875, 9672.580078125 ], "wind_a": 0.0 }, "152314": { "creation_time": 1779833093703, "p": [ 3471.2880859375, 2603.841796875, 9689.1357421875 ], "wind_a": 0.0 } } } } }, "stages": [ { "lr": 0.1, "min_scaledown": 0, "name": "stage0", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "corr": 0.0, "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.1, "min_scaledown": 0, "name": "stage1", "params": [ "mesh_ms" ], "steps": 1000, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "lr": 0.01, "min_scaledown": 0, "name": "stage2", "params": [ "mesh_ms" ], "steps": 500, "w_fac": { "pred_dt": 0.0, "station_n": 10.0, "station_t": 10.0 } }, { "_lr": [ 10.0, 1.0, 0.1, 0.01, 0.001 ], "args": { "pred_dt_flow_gate": { "anticipatory_pull": { "_debug_roi_center_xyz": [ 17499, 13412, 51144 ], "debug_roi_k": 8, "debug_roi_root_min": 0.5, "debug_roi_tip_max": 0.5, "debug_slice_upsample": 8, "enabled": true, "inlier_one": 120.0, "inlier_zero": 80.0, "loss_weight": 2.0, "samples": 8 }, "backtrack_distance": 50.0, "debug": false, "debug_out_dir": "/home/ubuntu/villa/lasagna", "debug_vis_interval": 0, "enabled": true, "gate_factor": 1.0, "local_boost": 0.5 }, "status_interval": 10 }, "dlr": [ 1.0, 0.1, 0.01, 0.001, 0.0001 ], "lr": 1.0, "min_scaledown": 0, "name": "snap", "params": [ "mesh_ms" ], "steps": 500 } ] }, "linked_surfaces": [], "model": null, "volume_shape_zyx": [ 18946, 8174, 8174 ] }, "model_source": "/tmp/fit_reopt_q1rcggan/model_reopt.pt", "scale": [ 0.07999999821186066, 0.07999999821186066 ], "tags": { "date_last_modified": "20260614185644748", "reviewed": { "date": "20260604080934319" } }, "type": "seg", "uuid": "same_wrap003280_lasagna" }