{
    "area_vx2": 409375.0,
    "base_shape_zyx": [
        18946,
        8174,
        8174
    ],
    "bbox": [
        [
            3387.747314453125,
            2517.76318359375,
            8943.84765625
        ],
        [
            3741.0751953125,
            2875.181884765625,
            9506.8857421875
        ]
    ],
    "extra_channels": [
        {
            "dtype": "float32",
            "file": "flow_gate_local_contrast.tif",
            "name": "flow_gate_local_contrast",
            "range": [
                0.0,
                1.0
            ],
            "source": "pred_dt_flow_gate.local_contrast",
            "source_config": {
                "backtrack_distance": 50.0,
                "gate_factor": 1.0,
                "grid_step": 4,
                "local_boost": 0.5
            }
        },
        {
            "dtype": "float32",
            "file": "flow_gate_component_normalized.tif",
            "name": "flow_gate_component_normalized",
            "range": [
                0.0,
                1.0
            ],
            "source": "pred_dt_flow_gate.component_normalized",
            "source_config": {
                "backtrack_distance": 50.0,
                "gate_factor": 1.0,
                "grid_step": 4,
                "local_boost": 0.5
            }
        }
    ],
    "fit_config": {
        "_corr_point_roi_init_": {
            "effective_seed": [
                13911.0654296875,
                10422.94140625,
                37329.21875
            ],
            "final_anchor_h": 220.53326286375523,
            "final_anchor_w": 133.08741442859173,
            "final_shell_id": "shell_0006.tifxyz",
            "final_trim_bottom": 34,
            "final_trim_top": 3,
            "init_margin_grid_points": 80,
            "initial_seed": [
                13911.0654296875,
                10422.94140625,
                37329.21875
            ],
            "initial_shell_id": "shell_0006.tifxyz",
            "initial_skipped_point_count": 0,
            "initial_skipped_reasons": {},
            "initial_trim_bottom": 34,
            "initial_trim_top": 3,
            "initial_usable_point_count": 15,
            "mode": "corr-point-roi",
            "model_h": 8253.324890136719,
            "model_w": 8034.116363525391,
            "model_w_unit": "voxels",
            "output_radius_grid_points": 20,
            "parsed_point_count": 15,
            "projected_h_span_grid": 5.066497802734375,
            "projected_h_span_vx": 253.32489013671875,
            "projected_points": [
                {
                    "collection_id": 3589,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 2.6126377145863935,
                    "h": 217.9281005859375,
                    "point_id": 152409,
                    "row_index": 0,
                    "w": 133.284912109375
                },
                {
                    "collection_id": 3589,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 2.2545208905450926,
                    "h": 218.2808074951172,
                    "point_id": 152410,
                    "row_index": 1,
                    "w": 133.18389892578125
                },
                {
                    "collection_id": 3589,
                    "direction_sign": 1,
                    "grid_distance_to_anchor": 1.8539905059300936,
                    "h": 218.679443359375,
                    "point_id": 152411,
                    "row_index": 2,
                    "w": 133.1125946044922
                },
                {
                    "collection_id": 3589,
                    "direction_sign": 1,
                    "grid_distance_to_anchor": 1.5039448598594365,
                    "h": 219.02992248535156,
                    "point_id": 152412,
                    "row_index": 3,
                    "w": 133.1300506591797
                },
                {
                    "collection_id": 3589,
                    "direction_sign": 1,
                    "grid_distance_to_anchor": 1.13310201802227,
                    "h": 219.40310668945313,
                    "point_id": 152413,
                    "row_index": 4,
                    "w": 133.1690673828125
                },
                {
                    "collection_id": 3589,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 0.780670367041429,
                    "h": 219.75531005859375,
                    "point_id": 152414,
                    "row_index": 5,
                    "w": 133.15249633789063
                },
                {
                    "collection_id": 3589,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 0.397296522335597,
                    "h": 220.1362762451172,
                    "point_id": 152415,
                    "row_index": 6,
                    "w": 133.1031036376953
                },
                {
                    "collection_id": 3589,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 0.17413476055337523,
                    "h": 220.359130859375,
                    "point_id": 152416,
                    "row_index": 7,
                    "w": 133.08839416503906
                },
                {
                    "collection_id": 3589,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 0.3666282909583186,
                    "h": 220.88937377929688,
                    "point_id": 152417,
                    "row_index": 8,
                    "w": 133.00022888183594
                },
                {
                    "collection_id": 3589,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 0.7409948674563348,
                    "h": 221.24917602539063,
                    "point_id": 152418,
                    "row_index": 9,
                    "w": 132.89625549316406
                },
                {
                    "collection_id": 3589,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 1.1412245719726621,
                    "h": 221.64004516601563,
                    "point_id": 152419,
                    "row_index": 10,
                    "w": 132.8091583251953
                },
                {
                    "collection_id": 3589,
                    "direction_sign": -1,
                    "grid_distance_to_anchor": 1.525150039094927,
                    "h": 222.01622009277344,
                    "point_id": 152420,
                    "row_index": 11,
                    "w": 132.7311553955078
                },
                {
                    "collection_id": 3589,
                    "direction_sign": 1,
                    "grid_distance_to_anchor": 1.9399706944701987,
                    "h": 222.4281768798828,
                    "point_id": 152421,
                    "row_index": 12,
                    "w": 132.67173767089844
                },
                {
                    "collection_id": 3589,
                    "direction_sign": 1,
                    "grid_distance_to_anchor": 2.323527342817442,
                    "h": 222.81053161621094,
                    "point_id": 152422,
                    "row_index": 13,
                    "w": 132.62608337402344
                },
                {
                    "collection_id": 3589,
                    "direction_sign": 1,
                    "grid_distance_to_anchor": 2.508631558696729,
                    "h": 222.99459838867188,
                    "point_id": 152423,
                    "row_index": 14,
                    "w": 132.6025848388672
                }
            ],
            "projected_w_span_grid": 0.6823272705078125,
            "projected_w_span_vx": 34.116363525390625,
            "projection_mode": "normal-line",
            "skipped_point_count": 0,
            "skipped_points": [],
            "skipped_reasons": {},
            "usable_point_count": 15,
            "windings": 1
        },
        "args": {
            "approval-inpaint": false,
            "approval-inpaint-corr-spacing": null,
            "approval-inpaint-output-mask": false,
            "approval-inpaint-output-mask-dilate": 3,
            "approval-inpaint-padding-frac": 0.25,
            "approval-inpaint-tifxyz": null,
            "corr-point-roi": true,
            "corr-point-roi-init-margin": 80,
            "corr-point-roi-output-radius": 20,
            "crop": null,
            "cuda-gridsample": 1,
            "depth": 1,
            "device": "cuda",
            "downscale": 4.0,
            "erode-valid-mask": 0,
            "flatten-solver": "torch",
            "init-mode": "shell-dir-crop",
            "input": "/ephemeral/lasag_strip_outputs/.lasagna_point_strip_work/collection_3589/point_strip.lasagna.json",
            "mesh-h": 32,
            "mesh-step": 50,
            "mesh-w": 32,
            "model-h": 8253.324890136719,
            "model-init": "seed",
            "model-input": null,
            "model-output": "/tmp/fit_reopt_k2wnfmrv/model_reopt.pt",
            "model-w": 8034.116363525391,
            "model-w-unit": "voxels",
            "normal-mask-zero": 0,
            "out-dir": null,
            "progress": true,
            "pyramid-d": false,
            "seed": [
                13911.0654296875,
                10422.94140625,
                37329.21875
            ],
            "snapshot-interval": 1000,
            "sparse-prefetch-backend": "tensorstore",
            "subsample-mesh": 4,
            "subsample-winding": 4,
            "tifxyz-flow-gate-channels": true,
            "tifxyz-init": null,
            "winding-step": 25,
            "winding-volume": null,
            "windings": 1,
            "z-center": 0.0
        },
        "base": {
            "bend": 100.0,
            "corr": 0.0001,
            "data": 0.0,
            "data_plain": 0.0,
            "ext_offset": 0.0,
            "normal": 1.0,
            "pred_dt": 0.001,
            "smooth": 10.0,
            "station_n": 0.1,
            "station_t": 0.1,
            "step": 10.0,
            "winding_density": 0.01
        },
        "corr_points": {
            "collections": {
                "3589": {
                    "color": [
                        1.0,
                        0.6274510025978088,
                        0.8627451062202454
                    ],
                    "metadata": {
                        "winding_is_absolute": true
                    },
                    "name": "same_wrap3283",
                    "points": {
                        "152409": {
                            "creation_time": 1779833107379,
                            "p": [
                                13930.5009765625,
                                10428.623046875,
                                36799.97265625
                            ],
                            "wind_a": 0.0
                        },
                        "152410": {
                            "creation_time": 1779833107379,
                            "p": [
                                13911.0654296875,
                                10422.94140625,
                                36871.5859375
                            ],
                            "wind_a": 0.0
                        },
                        "152411": {
                            "creation_time": 1779833107379,
                            "p": [
                                13898.1083984375,
                                10419.154296875,
                                36945.99609375
                            ],
                            "wind_a": 0.0
                        },
                        "152412": {
                            "creation_time": 1779833107379,
                            "p": [
                                13904.9208984375,
                                10421.1455078125,
                                37023.0546875
                            ],
                            "wind_a": 0.0
                        },
                        "152413": {
                            "creation_time": 1779833107379,
                            "p": [
                                13917.5439453125,
                                10424.8349609375,
                                37097.60546875
                            ],
                            "wind_a": 0.0
                        },
                        "152414": {
                            "creation_time": 1779833107379,
                            "p": [
                                13917.5439453125,
                                10424.8349609375,
                                37172.015625
                            ],
                            "wind_a": 0.0
                        },
                        "152415": {
                            "creation_time": 1779833107379,
                            "p": [
                                13911.0654296875,
                                10422.94140625,
                                37249.21875
                            ],
                            "wind_a": 0.0
                        },
                        "152416": {
                            "creation_time": 1779833107379,
                            "p": [
                                13911.0654296875,
                                10422.94140625,
                                37329.21875
                            ],
                            "wind_a": 0.0
                        },
                        "152417": {
                            "creation_time": 1779833107379,
                            "p": [
                                13900.6884765625,
                                10419.908203125,
                                37404.7421875
                            ],
                            "wind_a": 0.0
                        },
                        "152418": {
                            "creation_time": 1779833107379,
                            "p": [
                                13885.15234375,
                                10415.3671875,
                                37478.03515625
                            ],
                            "wind_a": 0.0
                        },
                        "152419": {
                            "creation_time": 1779833107379,
                            "p": [
                                13878.673828125,
                                10413.47265625,
                                37555.2421875
                            ],
                            "wind_a": 0.0
                        },
                        "152420": {
                            "creation_time": 1779833107379,
                            "p": [
                                13872.1953125,
                                10411.5791015625,
                                37632.4453125
                            ],
                            "wind_a": 0.0
                        },
                        "152421": {
                            "creation_time": 1779833107379,
                            "p": [
                                13872.1953125,
                                10411.5791015625,
                                37712.4453125
                            ],
                            "wind_a": 0.0
                        },
                        "152422": {
                            "creation_time": 1779833107379,
                            "p": [
                                13876.9755859375,
                                10412.9765625,
                                37790.3828125
                            ],
                            "wind_a": 0.0
                        },
                        "152423": {
                            "creation_time": 1779833107379,
                            "p": [
                                13878.673828125,
                                10413.47265625,
                                37825.8984375
                            ],
                            "wind_a": 0.0
                        }
                    }
                }
            }
        },
        "lasagna_base_shape_zyx": [
            75784,
            32693,
            32693
        ],
        "stages": [
            {
                "lr": 0.1,
                "min_scaledown": 0,
                "name": "stage0",
                "params": [
                    "mesh_ms"
                ],
                "steps": 1000,
                "w_fac": {
                    "corr": 0.0,
                    "pred_dt": 0.0,
                    "station_n": 10.0,
                    "station_t": 10.0
                }
            },
            {
                "lr": 0.1,
                "min_scaledown": 0,
                "name": "stage1",
                "params": [
                    "mesh_ms"
                ],
                "steps": 1000,
                "w_fac": {
                    "pred_dt": 0.0,
                    "station_n": 10.0,
                    "station_t": 10.0
                }
            },
            {
                "lr": 0.01,
                "min_scaledown": 0,
                "name": "stage2",
                "params": [
                    "mesh_ms"
                ],
                "steps": 500,
                "w_fac": {
                    "pred_dt": 0.0,
                    "station_n": 10.0,
                    "station_t": 10.0
                }
            },
            {
                "_lr": [
                    10.0,
                    1.0,
                    0.1,
                    0.01,
                    0.001
                ],
                "args": {
                    "pred_dt_flow_gate": {
                        "anticipatory_pull": {
                            "_debug_roi_center_xyz": [
                                17499,
                                13412,
                                51144
                            ],
                            "debug_roi_k": 8,
                            "debug_roi_root_min": 0.5,
                            "debug_roi_tip_max": 0.5,
                            "debug_slice_upsample": 8,
                            "enabled": true,
                            "inlier_one": 120.0,
                            "inlier_zero": 80.0,
                            "loss_weight": 2.0,
                            "samples": 8
                        },
                        "backtrack_distance": 50.0,
                        "debug": false,
                        "debug_out_dir": "/home/ubuntu/villa/lasagna",
                        "debug_vis_interval": 0,
                        "enabled": true,
                        "gate_factor": 1.0,
                        "local_boost": 0.5
                    },
                    "status_interval": 10
                },
                "dlr": [
                    1.0,
                    0.1,
                    0.01,
                    0.001,
                    0.0001
                ],
                "lr": 1.0,
                "min_scaledown": 0,
                "name": "snap",
                "params": [
                    "mesh_ms"
                ],
                "steps": 500
            }
        ],
        "vc3d_volume_shape_zyx": [
            18946,
            8174,
            8174
        ]
    },
    "format": "tifxyz",
    "lasagna_base_shape_zyx": [
        75784,
        32693,
        32693
    ],
    "lasagna_job": {
        "config": {
            "args": {
                "corr-point-roi": true,
                "corr-point-roi-init-margin": 80,
                "corr-point-roi-output-radius": 20,
                "init-mode": "shell-dir-crop",
                "mesh-step": 50.0,
                "model-h": 5000.0,
                "model-init": "seed",
                "model-w": 5000.0,
                "model-w-unit": "voxels",
                "seed": [
                    3477.766357421875,
                    2605.7353515625,
                    9332.3046875
                ],
                "tifxyz-flow-gate-channels": true,
                "windings": 1
            },
            "base": {
                "bend": 100.0,
                "corr": 0.0001,
                "data": 0.0,
                "data_plain": 0.0,
                "ext_offset": 0.0,
                "normal": 1.0,
                "pred_dt": 0.001,
                "smooth": 10.0,
                "station_n": 0.1,
                "station_t": 0.1,
                "step": 10.0,
                "winding_density": 0.01
            },
            "corr_points": {
                "collections": {
                    "3589": {
                        "color": [
                            1.0,
                            0.6274510025978088,
                            0.8627451062202454
                        ],
                        "metadata": {
                            "winding_is_absolute": true
                        },
                        "name": "same_wrap3283",
                        "points": {
                            "152409": {
                                "creation_time": 1779833107379,
                                "p": [
                                    3482.625244140625,
                                    2607.15576171875,
                                    9199.9931640625
                                ],
                                "wind_a": 0.0
                            },
                            "152410": {
                                "creation_time": 1779833107379,
                                "p": [
                                    3477.766357421875,
                                    2605.7353515625,
                                    9217.896484375
                                ],
                                "wind_a": 0.0
                            },
                            "152411": {
                                "creation_time": 1779833107379,
                                "p": [
                                    3474.527099609375,
                                    2604.78857421875,
                                    9236.4990234375
                                ],
                                "wind_a": 0.0
                            },
                            "152412": {
                                "creation_time": 1779833107379,
                                "p": [
                                    3476.230224609375,
                                    2605.286376953125,
                                    9255.763671875
                                ],
                                "wind_a": 0.0
                            },
                            "152413": {
                                "creation_time": 1779833107379,
                                "p": [
                                    3479.385986328125,
                                    2606.208740234375,
                                    9274.4013671875
                                ],
                                "wind_a": 0.0
                            },
                            "152414": {
                                "creation_time": 1779833107379,
                                "p": [
                                    3479.385986328125,
                                    2606.208740234375,
                                    9293.00390625
                                ],
                                "wind_a": 0.0
                            },
                            "152415": {
                                "creation_time": 1779833107379,
                                "p": [
                                    3477.766357421875,
                                    2605.7353515625,
                                    9312.3046875
                                ],
                                "wind_a": 0.0
                            },
                            "152416": {
                                "creation_time": 1779833107379,
                                "p": [
                                    3477.766357421875,
                                    2605.7353515625,
                                    9332.3046875
                                ],
                                "wind_a": 0.0
                            },
                            "152417": {
                                "creation_time": 1779833107379,
                                "p": [
                                    3475.172119140625,
                                    2604.97705078125,
                                    9351.185546875
                                ],
                                "wind_a": 0.0
                            },
                            "152418": {
                                "creation_time": 1779833107379,
                                "p": [
                                    3471.2880859375,
                                    2603.841796875,
                                    9369.5087890625
                                ],
                                "wind_a": 0.0
                            },
                            "152419": {
                                "creation_time": 1779833107379,
                                "p": [
                                    3469.66845703125,
                                    2603.3681640625,
                                    9388.810546875
                                ],
                                "wind_a": 0.0
                            },
                            "152420": {
                                "creation_time": 1779833107379,
                                "p": [
                                    3468.048828125,
                                    2602.894775390625,
                                    9408.111328125
                                ],
                                "wind_a": 0.0
                            },
                            "152421": {
                                "creation_time": 1779833107379,
                                "p": [
                                    3468.048828125,
                                    2602.894775390625,
                                    9428.111328125
                                ],
                                "wind_a": 0.0
                            },
                            "152422": {
                                "creation_time": 1779833107379,
                                "p": [
                                    3469.243896484375,
                                    2603.244140625,
                                    9447.595703125
                                ],
                                "wind_a": 0.0
                            },
                            "152423": {
                                "creation_time": 1779833107379,
                                "p": [
                                    3469.66845703125,
                                    2603.3681640625,
                                    9456.474609375
                                ],
                                "wind_a": 0.0
                            }
                        }
                    }
                }
            },
            "stages": [
                {
                    "lr": 0.1,
                    "min_scaledown": 0,
                    "name": "stage0",
                    "params": [
                        "mesh_ms"
                    ],
                    "steps": 1000,
                    "w_fac": {
                        "corr": 0.0,
                        "pred_dt": 0.0,
                        "station_n": 10.0,
                        "station_t": 10.0
                    }
                },
                {
                    "lr": 0.1,
                    "min_scaledown": 0,
                    "name": "stage1",
                    "params": [
                        "mesh_ms"
                    ],
                    "steps": 1000,
                    "w_fac": {
                        "pred_dt": 0.0,
                        "station_n": 10.0,
                        "station_t": 10.0
                    }
                },
                {
                    "lr": 0.01,
                    "min_scaledown": 0,
                    "name": "stage2",
                    "params": [
                        "mesh_ms"
                    ],
                    "steps": 500,
                    "w_fac": {
                        "pred_dt": 0.0,
                        "station_n": 10.0,
                        "station_t": 10.0
                    }
                },
                {
                    "_lr": [
                        10.0,
                        1.0,
                        0.1,
                        0.01,
                        0.001
                    ],
                    "args": {
                        "pred_dt_flow_gate": {
                            "anticipatory_pull": {
                                "_debug_roi_center_xyz": [
                                    17499,
                                    13412,
                                    51144
                                ],
                                "debug_roi_k": 8,
                                "debug_roi_root_min": 0.5,
                                "debug_roi_tip_max": 0.5,
                                "debug_slice_upsample": 8,
                                "enabled": true,
                                "inlier_one": 120.0,
                                "inlier_zero": 80.0,
                                "loss_weight": 2.0,
                                "samples": 8
                            },
                            "backtrack_distance": 50.0,
                            "debug": false,
                            "debug_out_dir": "/home/ubuntu/villa/lasagna",
                            "debug_vis_interval": 0,
                            "enabled": true,
                            "gate_factor": 1.0,
                            "local_boost": 0.5
                        },
                        "status_interval": 10
                    },
                    "dlr": [
                        1.0,
                        0.1,
                        0.01,
                        0.001,
                        0.0001
                    ],
                    "lr": 1.0,
                    "min_scaledown": 0,
                    "name": "snap",
                    "params": [
                        "mesh_ms"
                    ],
                    "steps": 500
                }
            ]
        },
        "linked_surfaces": [],
        "model": null,
        "volume_shape_zyx": [
            18946,
            8174,
            8174
        ]
    },
    "model_source": "/tmp/fit_reopt_k2wnfmrv/model_reopt.pt",
    "scale": [
        0.07999999821186066,
        0.07999999821186066
    ],
    "tags": {
        "date_last_modified": "20260614185644750",
        "reviewed": {
            "date": "20260604080934320"
        }
    },
    "type": "seg",
    "uuid": "same_wrap003283_lasagna"
}