Volume Cartographer .volpkg files and folders: - config.json: Volume Cartographer configuration file. - paths: containing Volume Cartographer segments - renders: contains intermediate files created during Volume Cartographer rendering of the "path" segments - transforms: contains coordinate system transforms between different scans of the scroll - volumes: contains the raw scroll scans. each scan has a unique timestamp as ID and contains a meta.json file with scan specific information. - working: contains auxilliary files that were created during the CT scan reconstruction Additional files and folders: - volumes_zarr: contains the original scans in the OME-Zarr format - volumes_zarr_standardized: contains the standardized scans in the OME-Zarr format. uses significantly less space on disk. - volumes_grids: contains the scroll in 3D tiff cubes. Faster to access 3D localized information. Deprecated in favor of OME-Zarr. - thaumato_outputs: contains segmentations and ink predictions from ThaumatoAnakalyptor.